Wall clock time and date at job start Tue Mar 31 2020 07:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38270 * 119.97583 * 2 1 4 4 C 1.38172 * 120.02408 * 180.32335 * 3 2 1 5 5 C 1.38483 * 119.97522 * 359.41225 * 4 3 2 6 6 F 1.35095 * 120.02661 * 180.25983 * 5 4 3 7 7 C 1.38437 * 119.94809 * 0.28514 * 5 4 3 8 8 C 1.50699 * 120.01733 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47131 * 279.99949 * 8 7 5 10 10 N 1.46903 * 109.47168 * 179.97438 * 9 8 7 11 11 C 1.46905 * 110.99988 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47004 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47179 * 300.00294 * 12 11 10 14 14 C 1.53006 * 109.46862 * 60.00240 * 12 11 10 15 15 C 1.52996 * 109.46766 * 179.97438 * 12 11 10 16 16 C 1.50708 * 109.46992 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99665 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00086 * 180.02562 * 16 15 12 19 19 N 1.31523 * 119.99950 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00163 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47007 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47376 * 119.99563 * 20 18 16 23 23 H 1.48508 * 109.46909 * 239.99850 * 20 18 16 24 24 C 1.38224 * 119.97132 * 179.71493 * 2 1 3 25 25 H 1.08996 * 109.47711 * 270.28741 * 1 2 3 26 26 H 1.09005 * 109.47115 * 30.28344 * 1 2 3 27 27 H 1.08999 * 109.47499 * 150.27936 * 1 2 3 28 28 H 1.07998 * 119.98571 * 0.03749 * 3 2 1 29 29 H 1.08002 * 120.01574 * 179.69763 * 4 3 2 30 30 H 1.09006 * 109.46959 * 39.99651 * 8 7 5 31 31 H 1.08998 * 109.47551 * 159.99515 * 8 7 5 32 32 H 1.08995 * 109.47356 * 299.99964 * 9 8 7 33 33 H 1.09006 * 109.46793 * 60.00090 * 9 8 7 34 34 H 1.00899 * 110.99648 * 56.04983 * 10 9 8 35 35 H 1.09001 * 109.46665 * 300.00437 * 11 10 9 36 36 H 1.08998 * 109.46871 * 60.00100 * 11 10 9 37 37 H 1.08999 * 109.47289 * 60.00244 * 13 12 11 38 38 H 1.08999 * 109.47213 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47308 * 299.99741 * 13 12 11 40 40 H 1.09001 * 109.47115 * 60.00025 * 14 12 11 41 41 H 1.08999 * 109.46768 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.46887 * 299.99659 * 14 12 11 43 43 H 1.09001 * 109.47584 * 300.00203 * 15 12 11 44 44 H 1.09000 * 109.47115 * 60.00630 * 15 12 11 45 45 H 0.96996 * 119.99630 * 179.97438 * 19 18 16 46 46 H 1.07994 * 119.98833 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0068 5 6 4.2725 -0.0001 -0.0012 6 9 5.6234 -0.0001 -0.0025 7 6 3.5798 -1.1986 0.0051 8 6 4.3323 -2.5043 0.0117 9 6 4.8037 -2.8284 -1.4073 10 7 5.5377 -4.1009 -1.4007 11 6 6.0062 -4.4453 -2.7498 12 6 6.7638 -5.7738 -2.7029 13 6 7.9646 -5.6431 -1.7638 14 6 5.8325 -6.8741 -2.1899 15 6 7.2511 -6.1328 -4.1080 16 6 7.9968 -7.4416 -4.0619 17 1 8.1120 -7.9647 -3.1241 18 6 8.5329 -7.9707 -5.2167 19 7 8.3930 -7.3333 -6.3587 20 14 9.4565 -9.5933 -5.1598 21 1 9.4730 -10.1048 -3.7657 22 1 8.7807 -10.5789 -6.0412 23 1 10.8509 -9.3858 -5.6269 24 6 2.1975 -1.1974 0.0060 25 1 -0.3634 0.0052 1.0276 26 1 -0.3633 0.8875 -0.5183 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6572 2.1327 0.0006 29 1 4.1190 2.1345 -0.0117 30 1 5.1959 -2.4225 0.6717 31 1 3.6772 -3.2995 0.3675 32 1 3.9401 -2.9101 -2.0673 33 1 5.4589 -2.0332 -1.7630 34 1 4.9728 -4.8422 -1.0142 35 1 5.1506 -4.5388 -3.4186 36 1 6.6692 -3.6612 -3.1154 37 1 7.6170 -5.3876 -0.7628 38 1 8.5046 -6.5894 -1.7307 39 1 8.6281 -4.8593 -2.1292 40 1 4.9770 -6.9671 -2.8589 41 1 6.3721 -7.8205 -2.1569 42 1 5.4850 -6.6184 -1.1889 43 1 6.3953 -6.2260 -4.7767 44 1 7.9144 -5.3490 -4.4738 45 1 8.7705 -7.7054 -7.1711 46 1 1.6569 -2.1322 0.0110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449554068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:06 Heat of formation + Delta-G solvation = -69.488685 kcal Electronic energy + Delta-G solvation = -22959.926517 eV Core-core repulsion = 19568.818612 eV Total energy + Delta-G solvation = -3391.107905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.86564 -40.30786 -39.23001 -36.56665 -34.64991 -33.57031 -32.83490 -29.77107 -28.72185 -27.89425 -27.43323 -26.55802 -24.71429 -23.53428 -23.15860 -21.41899 -19.50599 -18.46997 -18.34023 -17.65878 -16.93591 -16.62633 -16.53361 -16.21615 -15.63144 -15.34111 -15.04028 -14.92209 -14.53726 -14.45829 -14.38030 -14.18080 -13.92465 -13.76422 -13.66023 -13.14852 -12.91418 -12.79897 -12.69530 -12.60597 -12.46451 -12.32737 -12.25056 -12.15098 -11.94710 -11.89737 -11.78406 -11.38269 -10.87270 -10.75190 -10.51699 -9.88747 -9.39560 -9.33345 -8.14409 -6.21550 0.16844 0.26154 1.40145 1.41040 1.53507 2.43514 2.57543 3.18898 3.19497 3.35543 3.74097 3.85510 3.95686 4.05185 4.14593 4.22114 4.29905 4.32526 4.36550 4.39549 4.57433 4.73910 4.74419 4.78202 4.86046 4.88413 4.94343 4.96575 5.03477 5.08137 5.11348 5.20986 5.21749 5.23707 5.33955 5.40190 5.51231 5.53371 5.57964 5.58575 5.64812 5.86527 5.92186 5.98109 6.03374 6.35955 6.53736 6.93752 7.45843 8.98353 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.002488 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.447285 B =11252.620928 C =11490.667894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.098 4.098 4 C -0.155 4.155 5 C 0.064 3.936 6 F -0.153 7.153 7 C -0.119 4.119 8 C -0.069 4.069 9 C 0.070 3.930 10 N -0.682 5.682 11 C 0.082 3.918 12 C -0.055 4.055 13 C -0.108 4.108 14 C -0.122 4.122 15 C 0.038 3.962 16 C -0.512 4.512 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.939 5.939 20 Si 0.958 3.042 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.283 1.283 24 C -0.096 4.096 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.031 0.969 33 H 0.052 0.948 34 H 0.348 0.652 35 H 0.019 0.981 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.026 0.974 40 H 0.038 0.962 41 H 0.048 0.952 42 H 0.070 0.930 43 H -0.015 1.015 44 H -0.018 1.018 45 H 0.259 0.741 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 15.906 16.434 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.116 4.116 4 C -0.174 4.174 5 C 0.045 3.955 6 F -0.132 7.132 7 C -0.120 4.120 8 C -0.106 4.106 9 C -0.060 4.060 10 N -0.315 5.315 11 C -0.047 4.047 12 C -0.055 4.055 13 C -0.165 4.165 14 C -0.179 4.179 15 C 0.000 4.000 16 C -0.550 4.550 17 H 0.085 0.915 18 C -0.203 4.203 19 N -0.581 5.581 20 Si 0.784 3.216 21 H -0.183 1.183 22 H -0.207 1.207 23 H -0.209 1.209 24 C -0.114 4.114 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.175 0.825 29 H 0.164 0.836 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.168 0.832 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.003 0.997 44 H 0.000 1.000 45 H 0.068 0.932 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.605 16.177 16.457 28.430 hybrid contribution 0.486 -0.891 -1.258 1.617 sum -16.119 15.286 15.198 26.916 Atomic orbital electron populations 1.20846 0.88674 1.03936 1.03446 1.20349 0.98002 0.92573 0.98781 1.21231 0.92513 0.99289 0.98577 1.21389 0.95885 0.96902 1.03219 1.17963 0.76592 0.95346 1.05577 1.91465 1.30069 1.97475 1.94148 1.20009 0.95090 0.93844 1.03106 1.20412 0.99832 0.93762 0.96634 1.21827 0.95747 0.92086 0.96304 1.60464 1.43876 1.05226 1.21885 1.21808 0.97149 0.96755 0.88974 1.20488 0.95590 0.93437 0.95977 1.21511 0.96490 0.99844 0.98648 1.21686 0.98069 0.98368 0.99791 1.19030 0.94046 0.95029 0.91850 1.21643 1.33050 1.06252 0.94019 0.91462 1.25956 0.97767 1.01219 0.95392 1.70127 1.47546 1.40877 0.99539 0.85492 0.78034 0.79522 0.78589 1.18349 1.20721 1.20934 1.21118 0.91756 0.99467 0.99074 0.89874 0.90206 0.90813 0.82504 0.83604 0.90810 0.88694 0.95074 0.92951 0.83231 0.96299 0.93162 0.91336 0.94052 0.95434 0.94325 0.93311 0.91173 0.99688 1.00012 0.93176 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 71.24 0.71 -0.15 16 2 C -0.10 -1.30 5.88 -19.86 -0.12 -1.42 16 3 C -0.10 -1.32 9.70 22.26 0.22 -1.10 16 4 C -0.16 -2.71 10.03 22.31 0.22 -2.48 16 5 C 0.06 1.44 7.24 22.38 0.16 1.61 16 6 F -0.15 -4.11 16.66 44.97 0.75 -3.36 16 7 C -0.12 -2.43 5.14 -19.82 -0.10 -2.53 16 8 C -0.07 -1.44 5.33 29.85 0.16 -1.28 16 9 C 0.07 1.79 5.66 86.30 0.49 2.28 16 10 N -0.68 -19.59 5.71 -513.87 -2.94 -22.53 16 11 C 0.08 2.97 4.65 86.30 0.40 3.37 16 12 C -0.05 -2.22 0.60 -52.18 -0.03 -2.25 16 13 C -0.11 -4.24 8.07 71.98 0.58 -3.66 16 14 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 15 C 0.04 2.02 4.04 29.85 0.12 2.14 16 16 C -0.51 -28.72 7.65 25.60 0.20 -28.53 16 17 H 0.07 3.61 5.68 -2.91 -0.02 3.60 16 18 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 19 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 20 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 C -0.10 -1.54 9.32 22.26 0.21 -1.33 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.08 0.45 8.09 -2.38 -0.02 0.43 16 27 H 0.07 0.52 8.08 -2.39 -0.02 0.50 16 28 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 29 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 30 H 0.07 1.72 7.95 -2.38 -0.02 1.70 16 31 H 0.09 1.59 8.00 -2.39 -0.02 1.57 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.35 8.79 6.77 -89.70 -0.61 8.19 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.34 7.60 -2.39 -0.02 2.32 16 38 H 0.04 1.71 6.62 -2.39 -0.02 1.70 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 42 H 0.07 2.01 6.57 -2.39 -0.02 2.00 16 43 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.15 1.77 8.04 -2.91 -0.02 1.75 16 Total: -1.00 -67.17 370.91 4.71 -62.46 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.34 Total: 13.57 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 4.25 Total: -39.12 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -2.65 Total: -80.56 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.75 Total: -3.36 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.17 4.71 -62.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449554068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.028 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds