Wall clock time and date at job start Tue Mar 31 2020 06:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00128 * 2 1 4 4 C 1.53003 * 109.47157 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47022 * 64.99932 * 4 3 2 6 6 C 1.36940 * 120.00089 * 269.99916 * 5 4 3 7 7 H 1.08004 * 119.99885 * 37.40643 * 6 5 4 8 8 C 1.38807 * 120.00142 * 217.40511 * 6 5 4 9 9 N 1.31623 * 119.99916 * 19.94837 * 8 6 5 10 10 Si 1.86796 * 120.00174 * 199.95011 * 8 6 5 11 11 H 1.48498 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47185 * 120.00063 * 10 8 6 13 13 H 1.48505 * 109.47281 * 240.00032 * 10 8 6 14 14 C 1.46501 * 120.00024 * 89.99528 * 5 4 3 15 15 C 1.52998 * 109.47335 * 274.58113 * 14 5 4 16 16 H 1.08997 * 109.46672 * 57.93653 * 15 14 5 17 17 C 1.52992 * 109.47051 * 297.93370 * 15 14 5 18 18 C 1.50712 * 109.46888 * 177.93369 * 15 14 5 19 19 C 1.38268 * 119.94166 * 60.32340 * 18 15 14 20 20 C 1.38144 * 120.04867 * 180.28048 * 19 18 15 21 21 C 1.38729 * 119.94890 * 359.41870 * 20 19 18 22 22 O 1.35897 * 120.05674 * 180.25753 * 21 20 19 23 23 C 1.42906 * 116.99715 * 180.02562 * 22 21 20 24 24 C 1.38739 * 119.88359 * 0.27849 * 21 20 19 25 25 C 1.38137 * 119.94687 * 0.02562 * 24 21 20 26 26 H 1.08998 * 109.47129 * 300.00452 * 1 2 3 27 27 H 1.08996 * 109.46694 * 60.00078 * 1 2 3 28 28 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47233 * 60.00047 * 3 2 1 30 30 H 1.09002 * 109.47087 * 299.99803 * 3 2 1 31 31 H 1.08997 * 109.46955 * 305.00296 * 4 3 2 32 32 H 1.08998 * 109.46933 * 184.99658 * 4 3 2 33 33 H 0.97001 * 119.99937 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47298 * 154.57815 * 14 5 4 35 35 H 1.09002 * 109.46757 * 34.58751 * 14 5 4 36 36 H 1.08994 * 109.47143 * 66.18829 * 17 15 14 37 37 H 1.09008 * 109.46938 * 186.18722 * 17 15 14 38 38 H 1.09003 * 109.47303 * 306.18382 * 17 15 14 39 39 H 1.07996 * 119.97306 * 359.97119 * 19 18 15 40 40 H 1.08000 * 120.02559 * 179.69616 * 20 19 18 41 41 H 1.09005 * 109.46979 * 300.00035 * 23 22 21 42 42 H 1.08994 * 109.47435 * 60.00189 * 23 22 21 43 43 H 1.09000 * 109.47017 * 180.02562 * 23 22 21 44 44 H 1.08006 * 120.02453 * 180.02562 * 24 21 20 45 45 H 1.07996 * 119.97328 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0978 -0.7975 -1.3344 7 1 3.3849 -1.4349 -0.8325 8 6 5.1369 -1.3584 -2.0642 9 7 6.2068 -0.6438 -2.3419 10 14 5.0167 -3.1273 -2.6524 11 1 3.7225 -3.7081 -2.2133 12 1 5.0970 -3.1626 -4.1348 13 1 6.1349 -3.9173 -2.0772 14 6 4.2882 1.3997 -2.4130 15 6 3.0036 1.6900 -3.1916 16 1 2.2844 2.1806 -2.5358 17 6 2.4113 0.3765 -3.7062 18 6 3.3161 2.5914 -4.3583 19 6 4.2049 2.1760 -5.3327 20 6 4.4973 3.0028 -6.4000 21 6 3.8894 4.2458 -6.5001 22 8 4.1715 5.0587 -7.5519 23 6 3.5089 6.3244 -7.5896 24 6 2.9932 4.6576 -5.5244 25 6 2.7088 3.8297 -4.4557 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5685 0.8426 32 1 3.9785 2.1765 0.0902 33 1 6.9330 -1.0359 -2.8515 34 1 4.9938 0.8764 -3.0584 35 1 4.7299 2.3382 -2.0777 36 1 2.0842 -0.2300 -2.8618 37 1 1.5594 0.5904 -4.3517 38 1 3.1685 -0.1665 -4.2719 39 1 4.6745 1.2065 -5.2566 40 1 5.1954 2.6800 -7.1582 41 1 2.4305 6.1691 -7.6205 42 1 3.7682 6.8969 -6.6992 43 1 3.8224 6.8722 -8.4783 44 1 2.5182 5.6246 -5.6003 45 1 2.0116 4.1500 -3.6957 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453593468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:27 Heat of formation + Delta-G solvation = -40.410209 kcal Electronic energy + Delta-G solvation = -24493.736896 eV Core-core repulsion = 21091.517138 eV Total energy + Delta-G solvation = -3402.219757 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93232 -37.98812 -37.23476 -35.61738 -32.82118 -31.46239 -30.81750 -28.83781 -28.11910 -27.01492 -25.80158 -25.70559 -23.22228 -22.39053 -22.15130 -20.39212 -19.17658 -17.96974 -16.78761 -15.87108 -15.76265 -15.66148 -15.47205 -14.92841 -14.47600 -14.36566 -14.15081 -13.73093 -13.45097 -13.23042 -13.07494 -12.74070 -12.48003 -12.11451 -12.01595 -11.84116 -11.49906 -11.39018 -11.10735 -10.86792 -10.81376 -10.75331 -10.60967 -10.42723 -10.27359 -10.12788 -9.78943 -9.73373 -9.49054 -8.89467 -8.66504 -8.34050 -7.73606 -6.43895 -5.67264 -3.22413 1.67424 1.78356 3.38955 3.42008 3.51523 3.55623 4.11671 4.50452 4.57941 4.92766 5.08012 5.09331 5.16194 5.30583 5.37054 5.47675 5.59458 5.63070 5.69582 5.73872 5.76734 5.89173 5.99008 6.01039 6.07937 6.16331 6.23269 6.34718 6.39434 6.42105 6.51858 6.57830 6.74925 6.86275 6.97112 6.99161 7.01062 7.12049 7.25573 7.41729 7.60622 7.79904 7.88222 8.03597 8.67594 9.32860 9.93096 10.51394 11.34233 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.004996 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.788015 B = 5603.539756 C = 6840.297980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.041 3.959 4 C 0.144 3.856 5 N -0.574 5.574 6 C -0.234 4.234 7 H 0.068 0.932 8 C 0.008 3.992 9 N -0.894 5.894 10 Si 0.888 3.112 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.292 1.292 14 C 0.156 3.844 15 C -0.072 4.072 16 H 0.057 0.943 17 C -0.121 4.121 18 C -0.088 4.088 19 C -0.070 4.070 20 C -0.148 4.148 21 C 0.104 3.896 22 O -0.323 6.323 23 C 0.030 3.970 24 C -0.209 4.209 25 C -0.089 4.089 26 H 0.027 0.973 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.251 0.749 34 H 0.101 0.899 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.023 0.977 38 H 0.049 0.951 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.340 10.981 -4.790 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.039 4.039 4 C 0.017 3.983 5 N -0.293 5.293 6 C -0.364 4.364 7 H 0.086 0.914 8 C -0.191 4.191 9 N -0.538 5.538 10 Si 0.718 3.282 11 H -0.200 1.200 12 H -0.216 1.216 13 H -0.219 1.219 14 C 0.029 3.971 15 C -0.093 4.093 16 H 0.075 0.925 17 C -0.179 4.179 18 C -0.088 4.088 19 C -0.088 4.088 20 C -0.167 4.167 21 C 0.060 3.940 22 O -0.237 6.237 23 C -0.065 4.065 24 C -0.227 4.227 25 C -0.107 4.107 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.037 0.963 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.137 0.863 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.919 10.713 -5.010 14.233 hybrid contribution -0.539 -0.293 -0.319 0.691 sum -8.458 10.420 -5.328 14.440 Atomic orbital electron populations 1.22626 0.83674 1.01647 0.98629 1.88106 1.17177 1.27946 1.94944 1.23590 0.98365 0.84275 0.97633 1.20909 0.89261 0.96790 0.91369 1.43687 1.77082 1.03248 1.05256 1.19159 1.05887 0.81643 1.29715 0.91422 1.25134 0.94494 0.97022 1.02408 1.70008 1.05444 1.36459 1.41915 0.86448 0.77623 0.85736 0.78420 1.20015 1.21625 1.21931 1.21042 0.92917 0.93098 0.90021 1.20985 1.01199 0.94125 0.92964 0.92513 1.21615 0.98574 0.96798 1.00882 1.20170 0.96719 0.94989 0.96971 1.20992 0.96129 0.99451 0.92213 1.20420 1.03069 0.92524 1.00689 1.18951 0.96206 0.91214 0.87644 1.86034 1.65877 1.28249 1.43550 1.22958 0.97186 0.83660 1.02708 1.21088 1.02998 1.01395 0.97251 1.20835 0.99163 0.93720 0.96973 0.95458 0.95008 0.90583 0.95687 0.94082 0.92578 0.93347 0.93873 0.88106 0.96283 0.90545 0.95790 0.93225 0.84880 0.85731 0.93011 0.92918 0.88736 0.86255 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.08 9.74 -35.23 -0.34 -7.42 16 3 C 0.04 0.73 6.23 37.16 0.23 0.96 16 4 C 0.14 2.97 6.14 -4.04 -0.02 2.94 16 5 N -0.57 -13.62 2.16 -173.24 -0.37 -14.00 16 6 C -0.23 -6.17 7.52 -15.06 -0.11 -6.28 16 7 H 0.07 1.87 7.35 -52.48 -0.39 1.48 16 8 C 0.01 0.22 4.95 -17.43 -0.09 0.13 16 9 N -0.89 -25.17 11.43 55.49 0.63 -24.53 16 10 Si 0.89 21.55 29.60 -169.99 -5.03 16.52 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.16 3.51 4.56 -4.04 -0.02 3.49 16 15 C -0.07 -1.38 2.67 -91.77 -0.25 -1.63 16 16 H 0.06 1.05 5.59 -51.93 -0.29 0.76 16 17 C -0.12 -2.42 8.24 37.15 0.31 -2.12 16 18 C -0.09 -1.54 4.78 -104.60 -0.50 -2.04 16 19 C -0.07 -1.23 8.78 -39.61 -0.35 -1.58 16 20 C -0.15 -2.41 9.99 -39.43 -0.39 -2.80 16 21 C 0.10 1.59 6.69 -39.21 -0.26 1.33 16 22 O -0.32 -4.48 10.50 -19.42 -0.20 -4.69 16 23 C 0.03 0.28 9.81 101.05 0.99 1.27 16 24 C -0.21 -2.98 9.04 -39.43 -0.36 -3.33 16 25 C -0.09 -1.37 9.66 -39.61 -0.38 -1.75 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.73 5.78 -51.93 -0.30 0.43 16 31 H 0.06 1.21 8.04 -51.93 -0.42 0.80 16 32 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16 33 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.10 2.57 4.84 -51.93 -0.25 2.32 16 35 H 0.02 0.43 7.96 -51.93 -0.41 0.01 16 36 H 0.08 1.68 6.98 -51.93 -0.36 1.31 16 37 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.05 1.05 7.59 -51.93 -0.39 0.66 16 39 H 0.13 2.48 7.19 -52.49 -0.38 2.10 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 42 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.12 1.37 6.30 -52.48 -0.33 1.04 16 45 H 0.12 1.60 7.94 -52.49 -0.42 1.19 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -29.53 358.87 -7.24 -36.77 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.24 Total: 1.75 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.09 Total: -9.82 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.26 Total: -38.53 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.55 Total: -12.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.53 -7.24 -36.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453593468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.636 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds