Wall clock time and date at job start Tue Mar 31 2020 06:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00128 * 2 1 4 4 C 1.53003 * 109.47157 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47022 * 64.99932 * 4 3 2 6 6 C 1.36940 * 120.00089 * 269.99916 * 5 4 3 7 7 H 1.08004 * 119.99885 * 37.40643 * 6 5 4 8 8 C 1.38807 * 120.00142 * 217.40511 * 6 5 4 9 9 N 1.31623 * 119.99916 * 19.94837 * 8 6 5 10 10 Si 1.86796 * 120.00174 * 199.95011 * 8 6 5 11 11 H 1.48498 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47185 * 120.00063 * 10 8 6 13 13 H 1.48505 * 109.47281 * 240.00032 * 10 8 6 14 14 C 1.46501 * 120.00024 * 89.99528 * 5 4 3 15 15 C 1.52998 * 109.47335 * 274.58113 * 14 5 4 16 16 H 1.08997 * 109.46672 * 57.93653 * 15 14 5 17 17 C 1.52992 * 109.47051 * 297.93370 * 15 14 5 18 18 C 1.50712 * 109.46888 * 177.93369 * 15 14 5 19 19 C 1.38268 * 119.94166 * 60.32340 * 18 15 14 20 20 C 1.38144 * 120.04867 * 180.28048 * 19 18 15 21 21 C 1.38729 * 119.94890 * 359.41870 * 20 19 18 22 22 O 1.35897 * 120.05674 * 180.25753 * 21 20 19 23 23 C 1.42906 * 116.99715 * 180.02562 * 22 21 20 24 24 C 1.38739 * 119.88359 * 0.27849 * 21 20 19 25 25 C 1.38137 * 119.94687 * 0.02562 * 24 21 20 26 26 H 1.08998 * 109.47129 * 300.00452 * 1 2 3 27 27 H 1.08996 * 109.46694 * 60.00078 * 1 2 3 28 28 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47233 * 60.00047 * 3 2 1 30 30 H 1.09002 * 109.47087 * 299.99803 * 3 2 1 31 31 H 1.08997 * 109.46955 * 305.00296 * 4 3 2 32 32 H 1.08998 * 109.46933 * 184.99658 * 4 3 2 33 33 H 0.97001 * 119.99937 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47298 * 154.57815 * 14 5 4 35 35 H 1.09002 * 109.46757 * 34.58751 * 14 5 4 36 36 H 1.08994 * 109.47143 * 66.18829 * 17 15 14 37 37 H 1.09008 * 109.46938 * 186.18722 * 17 15 14 38 38 H 1.09003 * 109.47303 * 306.18382 * 17 15 14 39 39 H 1.07996 * 119.97306 * 359.97119 * 19 18 15 40 40 H 1.08000 * 120.02559 * 179.69616 * 20 19 18 41 41 H 1.09005 * 109.46979 * 300.00035 * 23 22 21 42 42 H 1.08994 * 109.47435 * 60.00189 * 23 22 21 43 43 H 1.09000 * 109.47017 * 180.02562 * 23 22 21 44 44 H 1.08006 * 120.02453 * 180.02562 * 24 21 20 45 45 H 1.07996 * 119.97328 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0978 -0.7975 -1.3344 7 1 3.3849 -1.4349 -0.8325 8 6 5.1369 -1.3584 -2.0642 9 7 6.2068 -0.6438 -2.3419 10 14 5.0167 -3.1273 -2.6524 11 1 3.7225 -3.7081 -2.2133 12 1 5.0970 -3.1626 -4.1348 13 1 6.1349 -3.9173 -2.0772 14 6 4.2882 1.3997 -2.4130 15 6 3.0036 1.6900 -3.1916 16 1 2.2844 2.1806 -2.5358 17 6 2.4113 0.3765 -3.7062 18 6 3.3161 2.5914 -4.3583 19 6 4.2049 2.1760 -5.3327 20 6 4.4973 3.0028 -6.4000 21 6 3.8894 4.2458 -6.5001 22 8 4.1715 5.0587 -7.5519 23 6 3.5089 6.3244 -7.5896 24 6 2.9932 4.6576 -5.5244 25 6 2.7088 3.8297 -4.4557 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5685 0.8426 32 1 3.9785 2.1765 0.0902 33 1 6.9330 -1.0359 -2.8515 34 1 4.9938 0.8764 -3.0584 35 1 4.7299 2.3382 -2.0777 36 1 2.0842 -0.2300 -2.8618 37 1 1.5594 0.5904 -4.3517 38 1 3.1685 -0.1665 -4.2719 39 1 4.6745 1.2065 -5.2566 40 1 5.1954 2.6800 -7.1582 41 1 2.4305 6.1691 -7.6205 42 1 3.7682 6.8969 -6.6992 43 1 3.8224 6.8722 -8.4783 44 1 2.5182 5.6246 -5.6003 45 1 2.0116 4.1500 -3.6957 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453593468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:27 Heat of formation + Delta-G solvation = -56.589561 kcal Electronic energy + Delta-G solvation = -24494.438485 eV Core-core repulsion = 21091.517138 eV Total energy + Delta-G solvation = -3402.921347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08802 -39.36833 -38.55569 -37.20527 -34.40754 -33.33776 -32.01685 -30.25217 -29.52244 -28.00377 -27.62197 -27.02309 -24.94571 -23.63831 -23.47601 -22.03341 -20.69278 -19.05453 -18.62295 -17.22016 -17.10105 -16.97083 -16.57557 -16.30965 -16.25019 -15.74374 -15.56038 -15.17036 -14.87461 -14.78570 -14.47263 -14.08113 -13.79861 -13.49657 -13.37930 -13.07624 -12.93044 -12.89376 -12.72190 -12.65351 -12.49252 -12.17298 -12.02892 -11.98119 -11.77959 -11.74582 -11.44084 -11.39857 -11.20580 -10.36243 -10.27391 -9.88988 -8.98163 -8.38840 -7.69608 -5.28491 0.45251 0.53613 1.44668 1.49776 1.58607 2.43422 2.58031 2.86624 3.19061 3.37304 3.72301 3.89607 4.00431 4.17440 4.26772 4.40201 4.43583 4.43813 4.52198 4.56565 4.58774 4.63256 4.66215 4.71469 4.75036 4.76582 4.82069 4.84822 4.90491 4.97185 5.12649 5.23769 5.26110 5.34230 5.36519 5.41342 5.46352 5.69991 5.83085 5.89481 5.91383 6.01862 6.52343 6.56471 6.66169 7.31912 8.00063 8.52315 9.26689 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.004996 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.788015 B = 5603.539756 C = 6840.297980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.051 3.949 4 C 0.139 3.861 5 N -0.588 5.588 6 C -0.223 4.223 7 H 0.053 0.947 8 C -0.034 4.034 9 N -0.923 5.923 10 Si 0.935 3.065 11 H -0.271 1.271 12 H -0.292 1.292 13 H -0.295 1.295 14 C 0.162 3.838 15 C -0.055 4.055 16 H 0.070 0.930 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.084 4.084 20 C -0.163 4.163 21 C 0.107 3.893 22 O -0.338 6.338 23 C 0.018 3.982 24 C -0.201 4.201 25 C -0.083 4.083 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.246 0.754 34 H 0.069 0.931 35 H 0.013 0.987 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.025 0.975 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.155 0.845 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 13.366 -5.138 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.308 5.308 6 C -0.354 4.354 7 H 0.071 0.929 8 C -0.230 4.230 9 N -0.569 5.569 10 Si 0.765 3.235 11 H -0.196 1.196 12 H -0.219 1.219 13 H -0.223 1.223 14 C 0.036 3.964 15 C -0.075 4.075 16 H 0.088 0.912 17 C -0.167 4.167 18 C -0.110 4.110 19 C -0.102 4.102 20 C -0.181 4.181 21 C 0.062 3.938 22 O -0.252 6.252 23 C -0.076 4.076 24 C -0.219 4.219 25 C -0.101 4.101 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.126 0.874 40 H 0.147 0.853 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.172 0.828 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.155 13.118 -5.351 17.431 hybrid contribution 0.102 -0.908 -0.236 0.943 sum -10.052 12.210 -5.587 16.773 Atomic orbital electron populations 1.22796 0.81262 1.02703 1.00064 1.88044 1.19902 1.28823 1.95266 1.23348 0.95935 0.84219 0.99231 1.21046 0.91566 0.96846 0.89279 1.43834 1.77503 1.02619 1.06842 1.19118 1.04704 0.82990 1.28574 0.92915 1.25598 0.94496 0.99597 1.03341 1.70115 1.06035 1.37569 1.43136 0.85695 0.77361 0.82764 0.77684 1.19594 1.21875 1.22284 1.20874 0.94093 0.91936 0.89510 1.20666 0.99293 0.94143 0.93416 0.91205 1.21463 0.98554 0.96770 0.99925 1.20039 0.98209 0.96095 0.96621 1.20837 0.96938 0.99008 0.93439 1.20490 1.03749 0.93353 1.00527 1.19045 0.95633 0.90909 0.88166 1.86028 1.66557 1.29805 1.42837 1.23334 0.97870 0.81854 1.04526 1.21418 1.02087 1.02434 0.95989 1.21069 0.98770 0.92542 0.97762 0.93168 0.94247 0.89887 0.92623 0.93641 0.94355 0.91842 0.94442 0.91296 0.96875 0.92763 0.93627 0.95614 0.87384 0.85268 0.91650 0.91804 0.86341 0.82763 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -15.15 9.74 -148.98 -1.45 -16.60 16 3 C 0.05 1.74 6.23 71.98 0.45 2.19 16 4 C 0.14 5.67 6.14 86.38 0.53 6.20 16 5 N -0.59 -28.39 2.16 -702.00 -1.52 -29.91 16 6 C -0.22 -12.07 7.52 84.03 0.63 -11.43 16 7 H 0.05 3.00 7.35 -2.91 -0.02 2.97 16 8 C -0.03 -1.92 4.95 84.86 0.42 -1.50 16 9 N -0.92 -54.00 11.43 21.65 0.25 -53.75 16 10 Si 0.94 45.70 29.60 68.60 2.03 47.73 16 11 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 13 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 14 C 0.16 7.47 4.56 86.38 0.39 7.87 16 15 C -0.05 -2.08 2.67 -11.54 -0.03 -2.11 16 16 H 0.07 2.46 5.59 -2.39 -0.01 2.45 16 17 C -0.11 -4.42 8.24 71.98 0.59 -3.83 16 18 C -0.11 -3.76 4.78 -19.85 -0.09 -3.85 16 19 C -0.08 -3.04 8.78 22.25 0.20 -2.85 16 20 C -0.16 -5.26 9.99 22.36 0.22 -5.04 16 21 C 0.11 3.07 6.69 22.51 0.15 3.22 16 22 O -0.34 -8.52 10.50 -92.39 -0.97 -9.49 16 23 C 0.02 0.27 9.81 113.37 1.11 1.38 16 24 C -0.20 -5.04 9.04 22.37 0.20 -4.84 16 25 C -0.08 -2.34 9.66 22.25 0.22 -2.13 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.50 5.78 -2.39 -0.01 1.49 16 31 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 32 H 0.06 2.36 7.94 -2.39 -0.02 2.34 16 33 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.07 3.69 4.84 -2.38 -0.01 3.67 16 35 H 0.01 0.60 7.96 -2.39 -0.02 0.58 16 36 H 0.05 2.40 6.98 -2.39 -0.02 2.38 16 37 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.02 1.12 7.59 -2.39 -0.02 1.10 16 39 H 0.11 4.37 7.19 -2.91 -0.02 4.35 16 40 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.06 0.81 7.66 -2.38 -0.02 0.79 16 42 H 0.06 0.82 7.66 -2.39 -0.02 0.81 16 43 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.15 2.76 6.30 -2.91 -0.02 2.74 16 45 H 0.14 3.26 7.94 -2.91 -0.02 3.24 16 Total: -1.00 -65.52 358.87 5.54 -59.99 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.96 Total: 16.72 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 6.24 Total: -14.68 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -1.27 Total: -83.66 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -2.42 Total: -26.09 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -65.52 5.54 -59.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453593468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.399 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds