Wall clock time and date at job start Tue Mar 31 2020 06:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00197 * 2 1 4 4 C 1.53009 * 109.47275 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46947 * 64.99751 * 4 3 2 6 6 C 1.36933 * 120.00230 * 269.99980 * 5 4 3 7 7 H 1.08007 * 120.00045 * 322.76157 * 6 5 4 8 8 C 1.38811 * 120.00306 * 142.76575 * 6 5 4 9 9 N 1.31615 * 120.00411 * 158.36304 * 8 6 5 10 10 Si 1.86809 * 119.99658 * 338.36178 * 8 6 5 11 11 H 1.48496 * 109.47201 * 95.76219 * 10 8 6 12 12 H 1.48500 * 109.47065 * 215.76508 * 10 8 6 13 13 H 1.48500 * 109.47123 * 335.76189 * 10 8 6 14 14 C 1.46503 * 119.99818 * 90.00426 * 5 4 3 15 15 C 1.53001 * 109.47448 * 84.79096 * 14 5 4 16 16 H 1.08998 * 109.46983 * 59.99483 * 15 14 5 17 17 C 1.52996 * 109.47265 * 179.97438 * 15 14 5 18 18 C 1.50702 * 109.47195 * 184.99833 * 17 15 14 19 19 C 1.38235 * 119.99950 * 89.99705 * 18 17 15 20 20 C 1.38236 * 120.00058 * 179.97438 * 19 18 17 21 21 C 1.38235 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.38231 * 120.00259 * 0.28005 * 21 20 19 23 23 C 1.38233 * 120.00162 * 270.02409 * 18 17 15 24 24 O 1.42903 * 109.46934 * 300.00383 * 15 14 5 25 25 C 1.42897 * 114.00314 * 150.00321 * 24 15 14 26 26 H 1.08998 * 109.46766 * 60.00141 * 1 2 3 27 27 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47480 * 300.00213 * 1 2 3 29 29 H 1.08996 * 109.47239 * 60.00276 * 3 2 1 30 30 H 1.09000 * 109.47325 * 299.99861 * 3 2 1 31 31 H 1.08996 * 109.46931 * 304.99988 * 4 3 2 32 32 H 1.08995 * 109.46713 * 184.99952 * 4 3 2 33 33 H 0.96998 * 120.00173 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.47209 * 324.79111 * 14 5 4 35 35 H 1.09000 * 109.47043 * 204.79109 * 14 5 4 36 36 H 1.09005 * 109.46931 * 64.99980 * 17 15 14 37 37 H 1.09002 * 109.47199 * 305.00010 * 17 15 14 38 38 H 1.07998 * 119.99821 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.99714 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.99734 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.00299 * 179.72608 * 22 21 20 42 42 H 1.08007 * 120.00020 * 0.02562 * 23 18 17 43 43 H 1.08995 * 109.47314 * 180.02562 * 25 24 15 44 44 H 1.09004 * 109.46730 * 299.99447 * 25 24 15 45 45 H 1.09001 * 109.47371 * 59.99301 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0978 -0.7976 -1.3344 7 1 4.4629 -1.3602 -0.4878 8 6 3.7515 -1.4545 -2.5071 9 7 4.2418 -2.6492 -2.7617 10 14 2.5895 -0.6431 -3.7241 11 1 3.3778 0.0437 -4.7786 12 1 1.7242 -1.6767 -4.3470 13 1 1.7428 0.3489 -3.0140 14 6 4.2884 1.3997 -2.4130 15 6 5.7334 1.8927 -2.3139 16 1 6.4083 1.0371 -2.2901 17 6 6.0591 2.7650 -3.5278 18 6 7.5158 3.1496 -3.4938 19 6 8.4574 2.3460 -4.1090 20 6 9.7935 2.6990 -4.0782 21 6 10.1880 3.8560 -3.4327 22 6 9.2471 4.6569 -2.8130 23 6 7.9105 4.3057 -2.8469 24 8 5.8942 2.6594 -1.1187 25 6 7.2096 2.6015 -0.5635 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5685 0.8427 32 1 3.9784 2.1765 0.0902 33 1 3.9995 -3.1084 -3.5810 34 1 3.6134 2.2553 -2.4367 35 1 4.1658 0.8148 -3.3245 36 1 5.4449 3.6653 -3.5036 37 1 5.8515 2.2081 -4.4416 38 1 8.1490 1.4427 -4.6143 39 1 10.5291 2.0713 -4.5592 40 1 11.2319 4.1316 -3.4083 41 1 9.5558 5.5586 -2.3049 42 1 7.1749 4.9332 -2.3655 43 1 7.2492 3.2085 0.3409 44 1 7.4551 1.5682 -0.3181 45 1 7.9275 2.9831 -1.2894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459525095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:22 Heat of formation + Delta-G solvation = -34.913474 kcal Electronic energy + Delta-G solvation = -24746.352034 eV Core-core repulsion = 21344.370633 eV Total energy + Delta-G solvation = -3401.981401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61416 -37.75994 -37.03534 -35.14967 -32.96312 -31.59518 -30.87403 -30.18975 -28.39124 -25.88597 -25.72823 -25.47440 -23.25599 -22.48816 -21.90842 -20.57142 -19.97291 -16.98957 -16.55286 -16.19659 -15.75172 -15.35381 -15.30101 -15.03162 -14.76350 -14.64789 -14.32736 -14.00206 -13.61228 -13.33701 -12.95258 -12.66733 -12.56321 -12.50277 -12.26089 -11.95541 -11.77329 -11.37947 -11.19767 -11.01393 -10.92685 -10.86254 -10.71877 -10.47854 -10.17062 -10.05552 -9.88595 -9.44235 -9.36070 -8.90738 -8.80350 -8.43762 -8.21112 -6.70580 -5.85967 -3.24377 1.43352 1.46976 3.33885 3.52699 3.60863 3.85184 4.36468 4.61730 4.63210 4.86597 4.95562 5.03008 5.11888 5.21569 5.44569 5.51512 5.59267 5.67960 5.69899 5.73451 5.79745 5.81459 5.89285 5.94936 6.00391 6.06029 6.09732 6.12175 6.12540 6.15939 6.20812 6.25332 6.40702 6.47566 6.55418 6.57462 6.61293 6.73537 6.79251 6.95711 7.08924 7.81524 7.96135 8.19916 8.50861 9.11668 9.84576 10.23961 11.30697 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.004910 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.646219 B = 5700.827592 C = 6450.962081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.041 3.959 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.240 4.240 7 H 0.078 0.922 8 C 0.033 3.967 9 N -0.908 5.908 10 Si 0.874 3.126 11 H -0.292 1.292 12 H -0.304 1.304 13 H -0.267 1.267 14 C 0.143 3.857 15 C 0.080 3.920 16 H 0.068 0.932 17 C -0.111 4.111 18 C -0.070 4.070 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.107 4.107 24 O -0.373 6.373 25 C 0.020 3.980 26 H 0.028 0.972 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 14.128 0.344 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C -0.039 4.039 4 C 0.025 3.975 5 N -0.311 5.311 6 C -0.369 4.369 7 H 0.096 0.904 8 C -0.165 4.165 9 N -0.550 5.550 10 Si 0.705 3.295 11 H -0.221 1.221 12 H -0.233 1.233 13 H -0.192 1.192 14 C 0.016 3.984 15 C 0.020 3.980 16 H 0.086 0.914 17 C -0.150 4.150 18 C -0.071 4.071 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.125 4.125 24 O -0.292 6.292 25 C -0.077 4.077 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.485 13.890 0.351 14.938 hybrid contribution -0.727 0.401 -0.956 1.266 sum 4.758 14.291 -0.604 15.075 Atomic orbital electron populations 1.22636 0.83849 1.01770 0.98410 1.88185 1.16993 1.27352 1.94833 1.23410 0.98379 0.84610 0.97460 1.21070 0.88686 0.97629 0.90102 1.43959 1.75587 1.03164 1.08422 1.18728 1.36700 0.80556 1.00886 0.90400 1.25406 0.97939 0.95065 0.98127 1.69852 1.44236 1.15181 1.25777 0.86983 0.83156 0.78665 0.80683 1.22128 1.23277 1.19184 1.21330 0.91192 0.93723 0.92144 1.23018 1.00991 0.91595 0.82426 0.91397 1.21307 0.91778 1.01465 1.00427 1.19981 0.95998 0.94495 0.96577 1.21161 0.92948 0.99641 0.99917 1.21116 0.95933 0.97006 0.99759 1.21072 0.99200 0.95540 0.99108 1.21097 0.93260 0.99848 1.00274 1.21031 0.95974 0.96668 0.98874 1.87814 1.29337 1.70677 1.41351 1.23014 0.85988 1.00639 0.98054 0.95300 0.90437 0.95401 0.95397 0.94869 0.92644 0.91159 0.93051 0.94073 0.91311 0.90509 0.90245 0.85931 0.86325 0.86561 0.86428 0.85952 0.91140 0.94515 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.81 10.18 -35.23 -0.36 -8.16 16 3 C 0.04 0.79 6.28 37.16 0.23 1.03 16 4 C 0.15 3.12 5.83 -4.04 -0.02 3.09 16 5 N -0.59 -13.97 2.03 -173.23 -0.35 -14.32 16 6 C -0.24 -6.71 9.43 -15.06 -0.14 -6.86 16 7 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 8 C 0.03 0.97 5.29 -17.43 -0.09 0.88 16 9 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 10 Si 0.87 22.57 24.97 -169.99 -4.24 18.32 16 11 H -0.29 -7.20 6.69 56.52 0.38 -6.82 16 12 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 13 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.14 3.05 4.08 -4.04 -0.02 3.03 16 15 C 0.08 1.49 2.59 -26.73 -0.07 1.42 16 16 H 0.07 1.42 7.79 -51.93 -0.40 1.02 16 17 C -0.11 -1.73 5.06 -27.88 -0.14 -1.87 16 18 C -0.07 -1.00 3.89 -104.62 -0.41 -1.41 16 19 C -0.12 -1.64 9.70 -39.58 -0.38 -2.03 16 20 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 21 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.13 -1.43 9.94 -39.58 -0.39 -1.83 16 23 C -0.11 -1.37 6.79 -39.58 -0.27 -1.64 16 24 O -0.37 -6.54 8.37 -35.23 -0.29 -6.84 16 25 C 0.02 0.30 10.23 101.05 1.03 1.33 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 32 H 0.07 1.31 6.59 -51.93 -0.34 0.97 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.07 1.61 3.45 -51.93 -0.18 1.43 16 36 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 37 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 38 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 45 H 0.05 0.73 3.84 -51.93 -0.20 0.53 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -31.72 358.22 -6.88 -38.60 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.46 Total: 1.12 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.35 Total: -6.92 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.42 Total: -41.52 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.65 Total: -15.00 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.24 Total: 18.32 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.72 -6.88 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459525095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.687 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds