Wall clock time and date at job start Tue Mar 31 2020 06:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00197 * 2 1 4 4 C 1.53009 * 109.47275 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46947 * 64.99751 * 4 3 2 6 6 C 1.36933 * 120.00230 * 269.99980 * 5 4 3 7 7 H 1.08007 * 120.00045 * 322.76157 * 6 5 4 8 8 C 1.38811 * 120.00306 * 142.76575 * 6 5 4 9 9 N 1.31615 * 120.00411 * 158.36304 * 8 6 5 10 10 Si 1.86809 * 119.99658 * 338.36178 * 8 6 5 11 11 H 1.48496 * 109.47201 * 95.76219 * 10 8 6 12 12 H 1.48500 * 109.47065 * 215.76508 * 10 8 6 13 13 H 1.48500 * 109.47123 * 335.76189 * 10 8 6 14 14 C 1.46503 * 119.99818 * 90.00426 * 5 4 3 15 15 C 1.53001 * 109.47448 * 84.79096 * 14 5 4 16 16 H 1.08998 * 109.46983 * 59.99483 * 15 14 5 17 17 C 1.52996 * 109.47265 * 179.97438 * 15 14 5 18 18 C 1.50702 * 109.47195 * 184.99833 * 17 15 14 19 19 C 1.38235 * 119.99950 * 89.99705 * 18 17 15 20 20 C 1.38236 * 120.00058 * 179.97438 * 19 18 17 21 21 C 1.38235 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.38231 * 120.00259 * 0.28005 * 21 20 19 23 23 C 1.38233 * 120.00162 * 270.02409 * 18 17 15 24 24 O 1.42903 * 109.46934 * 300.00383 * 15 14 5 25 25 C 1.42897 * 114.00314 * 150.00321 * 24 15 14 26 26 H 1.08998 * 109.46766 * 60.00141 * 1 2 3 27 27 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47480 * 300.00213 * 1 2 3 29 29 H 1.08996 * 109.47239 * 60.00276 * 3 2 1 30 30 H 1.09000 * 109.47325 * 299.99861 * 3 2 1 31 31 H 1.08996 * 109.46931 * 304.99988 * 4 3 2 32 32 H 1.08995 * 109.46713 * 184.99952 * 4 3 2 33 33 H 0.96998 * 120.00173 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.47209 * 324.79111 * 14 5 4 35 35 H 1.09000 * 109.47043 * 204.79109 * 14 5 4 36 36 H 1.09005 * 109.46931 * 64.99980 * 17 15 14 37 37 H 1.09002 * 109.47199 * 305.00010 * 17 15 14 38 38 H 1.07998 * 119.99821 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.99714 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.99734 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.00299 * 179.72608 * 22 21 20 42 42 H 1.08007 * 120.00020 * 0.02562 * 23 18 17 43 43 H 1.08995 * 109.47314 * 180.02562 * 25 24 15 44 44 H 1.09004 * 109.46730 * 299.99447 * 25 24 15 45 45 H 1.09001 * 109.47371 * 59.99301 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0978 -0.7976 -1.3344 7 1 4.4629 -1.3602 -0.4878 8 6 3.7515 -1.4545 -2.5071 9 7 4.2418 -2.6492 -2.7617 10 14 2.5895 -0.6431 -3.7241 11 1 3.3778 0.0437 -4.7786 12 1 1.7242 -1.6767 -4.3470 13 1 1.7428 0.3489 -3.0140 14 6 4.2884 1.3997 -2.4130 15 6 5.7334 1.8927 -2.3139 16 1 6.4083 1.0371 -2.2901 17 6 6.0591 2.7650 -3.5278 18 6 7.5158 3.1496 -3.4938 19 6 8.4574 2.3460 -4.1090 20 6 9.7935 2.6990 -4.0782 21 6 10.1880 3.8560 -3.4327 22 6 9.2471 4.6569 -2.8130 23 6 7.9105 4.3057 -2.8469 24 8 5.8942 2.6594 -1.1187 25 6 7.2096 2.6015 -0.5635 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5685 0.8427 32 1 3.9784 2.1765 0.0902 33 1 3.9995 -3.1084 -3.5810 34 1 3.6134 2.2553 -2.4367 35 1 4.1658 0.8148 -3.3245 36 1 5.4449 3.6653 -3.5036 37 1 5.8515 2.2081 -4.4416 38 1 8.1490 1.4427 -4.6143 39 1 10.5291 2.0713 -4.5592 40 1 11.2319 4.1316 -3.4083 41 1 9.5558 5.5586 -2.3049 42 1 7.1749 4.9332 -2.3655 43 1 7.2492 3.2085 0.3409 44 1 7.4551 1.5682 -0.3181 45 1 7.9275 2.9831 -1.2894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459525095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:22 Heat of formation + Delta-G solvation = -54.440172 kcal Electronic energy + Delta-G solvation = -24747.198775 eV Core-core repulsion = 21344.370633 eV Total energy + Delta-G solvation = -3402.828142 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72019 -39.21058 -38.48206 -36.89502 -34.18290 -33.70124 -31.84784 -31.53869 -29.99379 -27.25678 -27.08482 -27.05699 -25.05907 -23.43504 -23.26917 -21.77658 -21.72241 -18.87432 -17.76480 -17.59401 -17.30008 -16.99591 -16.77365 -16.26465 -16.22579 -15.81821 -15.77954 -15.40371 -15.19258 -14.60623 -14.48698 -14.26127 -13.99833 -13.74418 -13.59334 -13.45608 -13.16663 -12.87150 -12.71812 -12.59813 -12.37658 -12.26671 -12.13857 -11.88010 -11.76303 -11.72863 -11.49782 -11.46842 -10.73180 -10.54016 -10.37710 -9.75720 -9.36364 -8.65320 -8.10678 -5.45020 0.46721 0.52374 1.27162 1.41357 1.53666 2.47298 2.87135 2.94173 3.10551 3.27435 3.39970 3.82030 3.99754 4.19542 4.25989 4.30687 4.34036 4.35729 4.44519 4.47707 4.49253 4.57160 4.62691 4.63795 4.66237 4.69163 4.71286 4.77464 4.82719 4.83144 4.90691 4.94611 5.02512 5.12957 5.20604 5.24621 5.30135 5.61285 5.65217 5.77011 6.01246 6.15481 6.23516 6.41339 6.54499 7.08562 7.71756 8.13403 9.10552 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.004910 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.646219 B = 5700.827592 C = 6450.962081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.044 3.956 4 C 0.151 3.849 5 N -0.602 5.602 6 C -0.220 4.220 7 H 0.033 0.967 8 C -0.022 4.022 9 N -0.958 5.958 10 Si 0.937 3.063 11 H -0.275 1.275 12 H -0.316 1.316 13 H -0.258 1.258 14 C 0.138 3.862 15 C 0.094 3.906 16 H 0.032 0.968 17 C -0.103 4.103 18 C -0.089 4.089 19 C -0.140 4.140 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.112 4.112 24 O -0.377 6.377 25 C 0.021 3.979 26 H 0.032 0.968 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.258 0.742 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.131 0.869 43 H 0.097 0.903 44 H 0.013 0.987 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 17.699 0.556 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.035 4.035 4 C 0.026 3.974 5 N -0.323 5.323 6 C -0.350 4.350 7 H 0.051 0.949 8 C -0.216 4.216 9 N -0.604 5.604 10 Si 0.767 3.233 11 H -0.203 1.203 12 H -0.246 1.246 13 H -0.182 1.182 14 C 0.013 3.987 15 C 0.033 3.967 16 H 0.051 0.949 17 C -0.141 4.141 18 C -0.089 4.089 19 C -0.158 4.158 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.130 4.130 24 O -0.296 6.296 25 C -0.075 4.075 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.116 0.884 44 H 0.032 0.968 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.678 17.519 0.575 18.425 hybrid contribution -0.676 -0.665 -0.888 1.299 sum 5.003 16.854 -0.313 17.583 Atomic orbital electron populations 1.22814 0.81560 1.02651 1.00046 1.88119 1.19711 1.28933 1.95203 1.23347 0.96868 0.84161 0.99130 1.21155 0.90246 0.98037 0.87995 1.44008 1.76411 1.01799 1.10068 1.18462 1.34777 0.82603 0.99153 0.94878 1.25924 0.99578 0.95738 1.00393 1.69986 1.46295 1.17280 1.26804 0.85958 0.80859 0.77531 0.78987 1.20273 1.24566 1.18203 1.21376 0.93447 0.93642 0.90267 1.22590 0.98191 0.91412 0.84458 0.94935 1.21156 0.93444 1.01213 0.98326 1.19903 0.95041 0.95715 0.98216 1.21248 0.94128 0.99662 1.00805 1.21373 0.95421 0.97837 0.99896 1.21457 1.00761 0.94638 0.97735 1.21454 0.92527 1.00600 0.99602 1.21163 0.97064 0.96096 0.98643 1.87761 1.30755 1.70059 1.40999 1.23117 0.85194 0.99866 0.99320 0.94951 0.90130 0.92302 0.91710 0.94911 0.94223 0.88847 0.93315 0.91832 0.93406 0.88958 0.90877 0.87120 0.84740 0.83710 0.83562 0.85124 0.88443 0.96790 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.17 10.18 -148.98 -1.52 -18.69 16 3 C 0.04 1.60 6.28 71.99 0.45 2.05 16 4 C 0.15 6.08 5.83 86.38 0.50 6.58 16 5 N -0.60 -28.58 2.03 -701.99 -1.43 -30.01 16 6 C -0.22 -12.77 9.43 84.03 0.79 -11.98 16 7 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 8 C -0.02 -1.30 5.29 84.86 0.45 -0.85 16 9 N -0.96 -61.68 13.97 21.65 0.30 -61.37 16 10 Si 0.94 47.70 24.97 68.60 1.71 49.42 16 11 H -0.28 -13.08 6.69 99.48 0.67 -12.41 16 12 H -0.32 -16.59 7.11 99.48 0.71 -15.89 16 13 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 14 C 0.14 5.82 4.08 86.38 0.35 6.17 16 15 C 0.09 3.47 2.59 30.59 0.08 3.55 16 16 H 0.03 1.42 7.79 -2.39 -0.02 1.40 16 17 C -0.10 -3.12 5.06 29.85 0.15 -2.97 16 18 C -0.09 -2.43 3.89 -19.87 -0.08 -2.50 16 19 C -0.14 -3.85 9.70 22.27 0.22 -3.63 16 20 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 21 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 22 C -0.12 -2.36 9.94 22.27 0.22 -2.14 16 23 C -0.11 -2.56 6.79 22.27 0.15 -2.41 16 24 O -0.38 -12.68 8.37 -148.98 -1.25 -13.93 16 25 C 0.02 0.62 10.23 113.37 1.16 1.78 16 26 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 32 H 0.09 3.29 6.59 -2.39 -0.02 3.27 16 33 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.06 2.39 8.11 -2.38 -0.02 2.37 16 35 H 0.05 2.22 3.45 -2.39 -0.01 2.21 16 36 H 0.09 2.47 8.09 -2.38 -0.02 2.45 16 37 H 0.07 2.26 8.09 -2.39 -0.02 2.24 16 38 H 0.11 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.01 0.46 8.09 -2.38 -0.02 0.44 16 45 H 0.06 1.68 3.84 -2.39 -0.01 1.67 16 Total: -1.00 -71.31 358.22 4.88 -66.43 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.90 Total: 17.28 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 6.15 Total: -9.13 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -1.12 Total: -91.38 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -2.76 Total: -32.62 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.71 Total: 49.42 kcal Total: -71.31 4.88 -66.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459525095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.993 kcal (2) G-P(sol) polarization free energy of solvation -71.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds