Wall clock time and date at job start Tue Mar 31 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99735 * 2 1 4 4 C 1.52994 * 109.47072 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47002 * 65.00244 * 4 3 2 6 6 C 1.36930 * 119.99850 * 270.00260 * 5 4 3 7 7 H 1.08004 * 120.00449 * 145.87766 * 6 5 4 8 8 C 1.38817 * 120.00039 * 325.87159 * 6 5 4 9 9 N 1.31620 * 119.99872 * 336.95176 * 8 6 5 10 10 Si 1.86797 * 120.00261 * 156.95527 * 8 6 5 11 11 H 1.48502 * 109.47149 * 59.99479 * 10 8 6 12 12 H 1.48494 * 109.47281 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46856 * 299.99764 * 10 8 6 14 14 C 1.46500 * 119.99774 * 89.99593 * 5 4 3 15 15 C 1.52998 * 109.47239 * 89.40680 * 14 5 4 16 16 C 1.52998 * 109.47426 * 179.97438 * 15 14 5 17 17 C 1.50698 * 109.47115 * 179.97438 * 16 15 14 18 18 C 1.38166 * 120.02881 * 264.99850 * 17 16 15 19 19 C 1.38246 * 120.05555 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.11227 * 0.02562 * 19 18 17 21 21 C 1.38132 * 120.05644 * 0.02562 * 20 19 18 22 22 C 1.38717 * 120.02782 * 84.72474 * 17 16 15 23 23 O 1.35903 * 120.05244 * 359.97438 * 22 17 16 24 24 C 1.42906 * 116.99544 * 179.97438 * 23 22 17 25 25 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47181 * 299.99722 * 1 2 3 27 27 H 1.09000 * 109.47350 * 59.99943 * 1 2 3 28 28 H 1.09006 * 109.47062 * 60.00048 * 3 2 1 29 29 H 1.09003 * 109.47155 * 300.00108 * 3 2 1 30 30 H 1.08998 * 109.47401 * 305.00370 * 4 3 2 31 31 H 1.09005 * 109.47327 * 184.99705 * 4 3 2 32 32 H 0.96994 * 120.00000 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47374 * 329.40395 * 14 5 4 34 34 H 1.09006 * 109.46770 * 209.40356 * 14 5 4 35 35 H 1.09006 * 109.47010 * 59.99455 * 15 14 5 36 36 H 1.09004 * 109.47033 * 300.00086 * 15 14 5 37 37 H 1.08997 * 109.47046 * 59.99802 * 16 15 14 38 38 H 1.09006 * 109.46911 * 299.99877 * 16 15 14 39 39 H 1.07997 * 119.97032 * 359.97438 * 18 17 16 40 40 H 1.08000 * 119.94294 * 179.97438 * 19 18 17 41 41 H 1.07998 * 119.97373 * 180.02562 * 20 19 18 42 42 H 1.07997 * 120.02812 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.46833 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.47012 * 299.99775 * 24 23 22 45 45 H 1.08995 * 109.46705 * 60.00136 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.0977 -0.7972 -1.3346 7 1 3.8764 -1.3032 -2.2628 8 6 4.5052 -1.5272 -0.2264 9 7 5.1946 -0.9419 0.7300 10 14 4.0753 -3.3401 -0.0924 11 1 4.6630 -4.0744 -1.2416 12 1 4.6225 -3.8862 1.1755 13 1 2.5991 -3.5009 -0.1048 14 6 4.2881 1.4000 -2.4131 15 6 5.7647 1.7987 -2.3735 16 6 6.0902 2.6711 -3.5874 17 6 7.5445 3.0642 -3.5481 18 6 7.9193 4.2729 -2.9933 19 6 9.2533 4.6338 -2.9564 20 6 10.2157 3.7869 -3.4748 21 6 9.8461 2.5780 -4.0315 22 6 8.5086 2.2104 -4.0636 23 8 8.1430 1.0184 -4.6043 24 6 9.1890 0.1904 -5.1166 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8507 0.5686 0.8426 31 1 3.9784 2.1767 0.0902 32 1 5.4796 -1.4520 1.5042 33 1 3.6690 2.2969 -2.3920 34 1 4.0870 0.8411 -3.3270 35 1 6.3839 0.9018 -2.3945 36 1 5.9658 2.3575 -1.4595 37 1 5.4711 3.5680 -3.5668 38 1 5.8892 2.1118 -4.5012 39 1 7.1694 4.9362 -2.5882 40 1 9.5441 5.5792 -2.5228 41 1 11.2572 4.0710 -3.4445 42 1 10.5981 1.9171 -4.4366 43 1 8.7616 -0.7286 -5.5175 44 1 9.7179 0.7212 -5.9082 45 1 9.8854 -0.0531 -4.3142 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459525251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:09 Heat of formation + Delta-G solvation = -42.108730 kcal Electronic energy + Delta-G solvation = -23889.081801 eV Core-core repulsion = 20486.788390 eV Total energy + Delta-G solvation = -3402.293411 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.05686 -37.30273 -37.11903 -35.63971 -33.68642 -31.28186 -30.10977 -29.80156 -28.20125 -27.14469 -25.57199 -25.30937 -23.15135 -21.97549 -21.80663 -20.57696 -19.59679 -17.81428 -16.59900 -16.09287 -15.69331 -15.55603 -15.43467 -14.96639 -14.51888 -14.30277 -14.10826 -13.86224 -13.52792 -13.45663 -13.12523 -12.86366 -12.58836 -12.05109 -11.83025 -11.67276 -11.57064 -11.16246 -11.00012 -10.95341 -10.93047 -10.71696 -10.62730 -10.50605 -10.28993 -10.06393 -9.80228 -9.60369 -9.50538 -8.73791 -8.66317 -8.26289 -7.92263 -6.41522 -5.57046 -3.07834 1.48149 1.60933 3.47201 3.53134 3.57688 3.64596 3.92068 4.68926 4.78807 4.88702 4.94630 5.15339 5.16904 5.24539 5.44472 5.49952 5.53986 5.57825 5.65114 5.77342 5.81056 5.81980 5.87215 6.03301 6.12199 6.16304 6.22664 6.29381 6.37778 6.45012 6.52846 6.57883 6.59348 6.70070 6.74566 6.82087 6.88338 6.95758 7.20822 7.43303 7.59183 7.81699 8.01375 8.17877 8.72143 9.38337 10.04365 10.57881 11.44714 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.004165 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.639209 B = 6720.331827 C = 7643.932411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.048 3.952 4 C 0.139 3.861 5 N -0.577 5.577 6 C -0.233 4.233 7 H 0.056 0.944 8 C 0.014 3.986 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.282 1.282 14 C 0.149 3.851 15 C -0.123 4.123 16 C -0.073 4.073 17 C -0.097 4.097 18 C -0.084 4.084 19 C -0.158 4.158 20 C -0.095 4.095 21 C -0.210 4.210 22 C 0.130 3.870 23 O -0.305 6.305 24 C 0.029 3.971 25 H 0.073 0.927 26 H 0.025 0.975 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.251 0.749 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 9.343 -8.212 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.012 3.988 5 N -0.296 5.296 6 C -0.363 4.363 7 H 0.074 0.926 8 C -0.184 4.184 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.209 1.209 14 C 0.023 3.977 15 C -0.163 4.163 16 C -0.111 4.111 17 C -0.098 4.098 18 C -0.102 4.102 19 C -0.177 4.177 20 C -0.113 4.113 21 C -0.229 4.229 22 C 0.085 3.915 23 O -0.218 6.218 24 C -0.067 4.067 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.125 0.875 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.117 0.883 44 H 0.068 0.932 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.906 8.993 -8.091 13.054 hybrid contribution -0.056 -0.708 0.185 0.734 sum 4.850 8.285 -7.906 12.437 Atomic orbital electron populations 1.22628 0.84473 1.01377 0.98300 1.88239 1.16361 1.27714 1.94780 1.23428 0.99093 0.84036 0.96606 1.21057 0.87344 0.96681 0.93714 1.43748 1.74913 1.02747 1.08240 1.18837 1.37932 0.81590 0.97926 0.92609 1.24904 0.97258 0.97391 0.98884 1.69946 1.36841 1.35910 1.11122 0.86494 0.78680 0.85815 0.76484 1.21328 1.22081 1.20861 1.20911 0.91932 0.93263 0.91595 1.22157 1.00463 0.98833 0.94836 1.20535 0.89892 0.99926 1.00716 1.19471 0.95985 0.93711 1.00635 1.20900 0.96157 0.95420 0.97738 1.20981 0.93108 1.00373 1.03208 1.20818 0.99118 0.93675 0.97670 1.21182 0.94763 0.99544 1.07390 1.18901 0.92467 0.85840 0.94340 1.86170 1.35065 1.27324 1.73214 1.23022 0.91203 0.94343 0.98088 0.90832 0.95631 0.95364 0.95906 0.95630 0.87508 0.94426 0.93932 0.95315 0.93981 0.91466 0.93190 0.92001 0.91190 0.85583 0.86317 0.86354 0.85874 0.88272 0.93190 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -8.16 10.18 -35.23 -0.36 -8.52 16 3 C 0.05 1.01 6.28 37.15 0.23 1.24 16 4 C 0.14 3.34 5.73 -4.04 -0.02 3.32 16 5 N -0.58 -14.63 2.43 -173.23 -0.42 -15.05 16 6 C -0.23 -6.57 8.98 -15.06 -0.14 -6.71 16 7 H 0.06 1.60 7.93 -52.48 -0.42 1.18 16 8 C 0.01 0.41 4.95 -17.43 -0.09 0.32 16 9 N -0.89 -26.50 11.33 55.49 0.63 -25.87 16 10 Si 0.89 22.91 29.61 -169.99 -5.03 17.88 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 13 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 14 C 0.15 3.21 5.67 -4.04 -0.02 3.18 16 15 C -0.12 -2.49 5.52 -26.73 -0.15 -2.64 16 16 C -0.07 -1.19 5.06 -27.88 -0.14 -1.34 16 17 C -0.10 -1.55 5.15 -104.47 -0.54 -2.09 16 18 C -0.08 -1.17 9.68 -39.60 -0.38 -1.56 16 19 C -0.16 -1.98 10.04 -39.56 -0.40 -2.38 16 20 C -0.09 -1.17 10.04 -39.60 -0.40 -1.56 16 21 C -0.21 -2.83 9.04 -39.43 -0.36 -3.18 16 22 C 0.13 2.06 6.66 -39.22 -0.26 1.80 16 23 O -0.30 -4.90 9.64 -19.44 -0.19 -5.09 16 24 C 0.03 0.33 9.81 101.05 0.99 1.32 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.11 2.96 5.33 -51.93 -0.28 2.68 16 31 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 33 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.04 0.91 8.03 -51.93 -0.42 0.49 16 35 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 38 H 0.07 1.16 7.70 -51.93 -0.40 0.76 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 45 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -32.31 370.56 -8.02 -40.33 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.68 Total: -0.63 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.55 Total: -8.64 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.21 Total: -40.92 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.55 Total: -13.60 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.03 Total: 17.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.31 -8.02 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459525251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.781 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds