Wall clock time and date at job start Tue Mar 31 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99735 * 2 1 4 4 C 1.52994 * 109.47072 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47002 * 65.00244 * 4 3 2 6 6 C 1.36930 * 119.99850 * 270.00260 * 5 4 3 7 7 H 1.08004 * 120.00449 * 145.87766 * 6 5 4 8 8 C 1.38817 * 120.00039 * 325.87159 * 6 5 4 9 9 N 1.31620 * 119.99872 * 336.95176 * 8 6 5 10 10 Si 1.86797 * 120.00261 * 156.95527 * 8 6 5 11 11 H 1.48502 * 109.47149 * 59.99479 * 10 8 6 12 12 H 1.48494 * 109.47281 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46856 * 299.99764 * 10 8 6 14 14 C 1.46500 * 119.99774 * 89.99593 * 5 4 3 15 15 C 1.52998 * 109.47239 * 89.40680 * 14 5 4 16 16 C 1.52998 * 109.47426 * 179.97438 * 15 14 5 17 17 C 1.50698 * 109.47115 * 179.97438 * 16 15 14 18 18 C 1.38166 * 120.02881 * 264.99850 * 17 16 15 19 19 C 1.38246 * 120.05555 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.11227 * 0.02562 * 19 18 17 21 21 C 1.38132 * 120.05644 * 0.02562 * 20 19 18 22 22 C 1.38717 * 120.02782 * 84.72474 * 17 16 15 23 23 O 1.35903 * 120.05244 * 359.97438 * 22 17 16 24 24 C 1.42906 * 116.99544 * 179.97438 * 23 22 17 25 25 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47181 * 299.99722 * 1 2 3 27 27 H 1.09000 * 109.47350 * 59.99943 * 1 2 3 28 28 H 1.09006 * 109.47062 * 60.00048 * 3 2 1 29 29 H 1.09003 * 109.47155 * 300.00108 * 3 2 1 30 30 H 1.08998 * 109.47401 * 305.00370 * 4 3 2 31 31 H 1.09005 * 109.47327 * 184.99705 * 4 3 2 32 32 H 0.96994 * 120.00000 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47374 * 329.40395 * 14 5 4 34 34 H 1.09006 * 109.46770 * 209.40356 * 14 5 4 35 35 H 1.09006 * 109.47010 * 59.99455 * 15 14 5 36 36 H 1.09004 * 109.47033 * 300.00086 * 15 14 5 37 37 H 1.08997 * 109.47046 * 59.99802 * 16 15 14 38 38 H 1.09006 * 109.46911 * 299.99877 * 16 15 14 39 39 H 1.07997 * 119.97032 * 359.97438 * 18 17 16 40 40 H 1.08000 * 119.94294 * 179.97438 * 19 18 17 41 41 H 1.07998 * 119.97373 * 180.02562 * 20 19 18 42 42 H 1.07997 * 120.02812 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.46833 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.47012 * 299.99775 * 24 23 22 45 45 H 1.08995 * 109.46705 * 60.00136 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.0977 -0.7972 -1.3346 7 1 3.8764 -1.3032 -2.2628 8 6 4.5052 -1.5272 -0.2264 9 7 5.1946 -0.9419 0.7300 10 14 4.0753 -3.3401 -0.0924 11 1 4.6630 -4.0744 -1.2416 12 1 4.6225 -3.8862 1.1755 13 1 2.5991 -3.5009 -0.1048 14 6 4.2881 1.4000 -2.4131 15 6 5.7647 1.7987 -2.3735 16 6 6.0902 2.6711 -3.5874 17 6 7.5445 3.0642 -3.5481 18 6 7.9193 4.2729 -2.9933 19 6 9.2533 4.6338 -2.9564 20 6 10.2157 3.7869 -3.4748 21 6 9.8461 2.5780 -4.0315 22 6 8.5086 2.2104 -4.0636 23 8 8.1430 1.0184 -4.6043 24 6 9.1890 0.1904 -5.1166 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8507 0.5686 0.8426 31 1 3.9784 2.1767 0.0902 32 1 5.4796 -1.4520 1.5042 33 1 3.6690 2.2969 -2.3920 34 1 4.0870 0.8411 -3.3270 35 1 6.3839 0.9018 -2.3945 36 1 5.9658 2.3575 -1.4595 37 1 5.4711 3.5680 -3.5668 38 1 5.8892 2.1118 -4.5012 39 1 7.1694 4.9362 -2.5882 40 1 9.5441 5.5792 -2.5228 41 1 11.2572 4.0710 -3.4445 42 1 10.5981 1.9171 -4.4366 43 1 8.7616 -0.7286 -5.5175 44 1 9.7179 0.7212 -5.9082 45 1 9.8854 -0.0531 -4.3142 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459525251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:09 Heat of formation + Delta-G solvation = -60.574634 kcal Electronic energy + Delta-G solvation = -23889.882543 eV Core-core repulsion = 20486.788390 eV Total energy + Delta-G solvation = -3403.094152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12048 -38.88370 -38.32117 -37.36874 -35.20536 -33.20718 -31.50440 -30.94578 -29.84618 -28.15710 -27.16545 -26.87252 -24.91678 -23.36670 -22.98654 -21.92419 -21.39485 -18.87816 -18.60015 -17.32630 -17.18886 -16.70589 -16.64114 -16.56688 -16.31833 -15.75179 -15.48825 -15.33495 -15.21592 -14.84907 -14.41853 -14.31349 -13.78691 -13.50135 -13.40269 -13.02948 -12.79374 -12.72393 -12.63684 -12.54104 -12.38902 -12.25890 -12.16182 -11.97520 -11.91775 -11.81205 -11.52263 -11.44847 -11.25017 -10.41278 -10.31508 -9.72571 -9.01948 -8.47256 -7.70881 -5.24897 0.43998 0.56425 1.45751 1.50614 1.57598 2.48190 2.60424 2.87371 3.23342 3.40447 3.72842 3.90159 3.94162 4.18489 4.25786 4.32482 4.37538 4.42340 4.49449 4.53677 4.53782 4.63375 4.64361 4.70176 4.70720 4.79257 4.82012 4.83283 4.88840 4.94418 4.95639 5.02169 5.17835 5.23742 5.38092 5.48863 5.61198 5.66111 5.71178 5.74581 5.89868 5.97335 6.50512 6.55323 6.69914 7.28801 8.00060 8.47930 9.26273 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.004165 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.639209 B = 6720.331827 C = 7643.932411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.056 3.944 4 C 0.136 3.864 5 N -0.592 5.592 6 C -0.235 4.235 7 H 0.044 0.956 8 C -0.031 4.031 9 N -0.920 5.920 10 Si 0.946 3.054 11 H -0.280 1.280 12 H -0.295 1.295 13 H -0.284 1.284 14 C 0.149 3.851 15 C -0.102 4.102 16 C -0.059 4.059 17 C -0.130 4.130 18 C -0.091 4.091 19 C -0.160 4.160 20 C -0.093 4.093 21 C -0.217 4.217 22 C 0.105 3.895 23 O -0.337 6.337 24 C 0.021 3.979 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.246 0.754 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.021 0.979 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 10.926 -8.782 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.312 5.312 6 C -0.365 4.365 7 H 0.062 0.938 8 C -0.227 4.227 9 N -0.566 5.566 10 Si 0.775 3.225 11 H -0.206 1.206 12 H -0.221 1.221 13 H -0.210 1.210 14 C 0.023 3.977 15 C -0.142 4.142 16 C -0.097 4.097 17 C -0.130 4.130 18 C -0.109 4.109 19 C -0.178 4.178 20 C -0.111 4.111 21 C -0.235 4.235 22 C 0.060 3.940 23 O -0.251 6.251 24 C -0.073 4.073 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.032 10.589 -8.682 14.589 hybrid contribution -0.077 -1.144 0.322 1.191 sum 4.955 9.445 -8.360 13.552 Atomic orbital electron populations 1.22818 0.81682 1.02486 1.00101 1.88155 1.19550 1.28835 1.95178 1.23224 0.96722 0.83919 0.98383 1.20995 0.89781 0.96296 0.91925 1.43936 1.75468 1.02329 1.09463 1.18932 1.36869 0.83299 0.97421 0.93826 1.25458 0.97773 1.00510 0.98976 1.70076 1.38189 1.36847 1.11461 0.85681 0.78066 0.82322 0.76408 1.20637 1.22137 1.21037 1.21014 0.93014 0.93672 0.89998 1.21830 0.98735 0.97385 0.96225 1.20332 0.91412 0.99782 0.98141 1.19589 0.95526 0.95159 1.02775 1.21179 0.97537 0.94917 0.97248 1.21377 0.92470 1.01490 1.02509 1.21275 1.00814 0.92856 0.96118 1.21490 0.94226 1.00483 1.07345 1.19229 0.93652 0.85948 0.95188 1.86113 1.37256 1.28012 1.73715 1.23252 0.90790 0.94510 0.98752 0.90213 0.93413 0.93807 0.93389 0.94251 0.91118 0.93169 0.94515 0.92533 0.94540 0.95964 0.94544 0.89679 0.91924 0.84074 0.83410 0.83164 0.83922 0.87391 0.90901 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.09 16 2 O -0.40 -18.04 10.18 -148.98 -1.52 -19.55 16 3 C 0.06 2.30 6.28 71.98 0.45 2.75 16 4 C 0.14 6.59 5.73 86.38 0.49 7.08 16 5 N -0.59 -30.40 2.43 -701.99 -1.71 -32.11 16 6 C -0.23 -13.53 8.98 84.04 0.75 -12.78 16 7 H 0.04 2.58 7.93 -2.91 -0.02 2.55 16 8 C -0.03 -1.83 4.95 84.86 0.42 -1.41 16 9 N -0.92 -56.12 11.33 21.65 0.25 -55.87 16 10 Si 0.95 48.00 29.61 68.60 2.03 50.03 16 11 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 13 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 14 C 0.15 6.40 5.67 86.38 0.49 6.89 16 15 C -0.10 -4.23 5.52 30.59 0.17 -4.06 16 16 C -0.06 -1.93 5.06 29.85 0.15 -1.78 16 17 C -0.13 -4.12 5.15 -19.77 -0.10 -4.22 16 18 C -0.09 -2.40 9.68 22.25 0.22 -2.19 16 19 C -0.16 -3.60 10.04 22.28 0.22 -3.37 16 20 C -0.09 -2.04 10.04 22.26 0.22 -1.81 16 21 C -0.22 -5.54 9.04 22.37 0.20 -5.33 16 22 C 0.10 3.33 6.66 22.51 0.15 3.48 16 23 O -0.34 -11.13 9.64 -92.46 -0.89 -12.02 16 24 C 0.02 0.49 9.81 113.37 1.11 1.60 16 25 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 4.01 5.33 -2.39 -0.01 4.00 16 31 H 0.05 2.22 8.07 -2.38 -0.02 2.20 16 32 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 34 H 0.04 1.59 8.03 -2.38 -0.02 1.57 16 35 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 2.35 8.05 -2.39 -0.02 2.34 16 38 H 0.06 2.12 7.70 -2.38 -0.02 2.10 16 39 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.14 2.92 6.30 -2.91 -0.02 2.90 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 1.29 7.65 -2.39 -0.02 1.27 16 45 H 0.06 1.22 7.67 -2.39 -0.02 1.21 16 Total: -1.00 -71.91 370.56 5.31 -66.60 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.94 Total: 15.99 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 6.20 Total: -13.06 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -1.46 Total: -87.98 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -2.41 Total: -31.57 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -71.91 5.31 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459525251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.028 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds