Wall clock time and date at job start Tue Mar 31 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00748 * 2 1 4 4 C 1.52997 * 109.47692 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46903 * 64.99956 * 4 3 2 6 6 C 1.36937 * 119.99847 * 270.00311 * 5 4 3 7 7 H 1.07999 * 120.00370 * 329.23006 * 6 5 4 8 8 C 1.38815 * 119.99757 * 149.23634 * 6 5 4 9 9 N 1.31621 * 119.99941 * 332.69434 * 8 6 5 10 10 Si 1.86797 * 119.99961 * 152.69884 * 8 6 5 11 11 H 1.48503 * 109.47284 * 84.99622 * 10 8 6 12 12 H 1.48507 * 109.47247 * 204.99730 * 10 8 6 13 13 H 1.48498 * 109.47464 * 324.99436 * 10 8 6 14 14 C 1.46497 * 119.99697 * 90.00359 * 5 4 3 15 15 C 1.52997 * 109.47087 * 85.52693 * 14 5 4 16 16 C 1.53005 * 109.47069 * 179.97438 * 15 14 5 17 17 C 1.50703 * 109.46969 * 179.97438 * 16 15 14 18 18 C 1.38291 * 119.96949 * 270.02273 * 17 16 15 19 19 C 1.38243 * 120.10608 * 180.02562 * 18 17 16 20 20 C 1.38164 * 120.06033 * 359.67615 * 19 18 17 21 21 C 1.38709 * 119.94052 * 0.57550 * 20 19 18 22 22 O 1.35906 * 120.05582 * 179.72202 * 21 20 19 23 23 C 1.42894 * 116.99977 * 359.72719 * 22 21 20 24 24 C 1.38123 * 119.97030 * 90.00397 * 17 16 15 25 25 H 1.08997 * 109.47024 * 300.00252 * 1 2 3 26 26 H 1.09000 * 109.46963 * 59.99671 * 1 2 3 27 27 H 1.08994 * 109.47606 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46854 * 59.99759 * 3 2 1 29 29 H 1.09004 * 109.47195 * 300.00252 * 3 2 1 30 30 H 1.09001 * 109.47003 * 305.00728 * 4 3 2 31 31 H 1.08994 * 109.47599 * 185.00391 * 4 3 2 32 32 H 0.97003 * 119.99793 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47201 * 325.52578 * 14 5 4 34 34 H 1.09000 * 109.46934 * 205.52403 * 14 5 4 35 35 H 1.09003 * 109.47316 * 60.00162 * 15 14 5 36 36 H 1.09000 * 109.46997 * 299.99672 * 15 14 5 37 37 H 1.08995 * 109.46933 * 60.00060 * 16 15 14 38 38 H 1.09000 * 109.47220 * 299.99874 * 16 15 14 39 39 H 1.07998 * 119.94437 * 359.97438 * 18 17 16 40 40 H 1.08007 * 119.97100 * 179.97438 * 19 18 17 41 41 H 1.08001 * 120.02962 * 180.30522 * 20 19 18 42 42 H 1.09003 * 109.47214 * 60.00087 * 23 22 21 43 43 H 1.09001 * 109.47428 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47104 * 300.00180 * 23 22 21 45 45 H 1.07995 * 120.03019 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9767 0.5637 -1.2509 6 6 4.0977 -0.7977 -1.3344 7 1 4.3619 -1.3712 -0.4583 8 6 3.8808 -1.4408 -2.5454 9 7 3.0767 -0.9060 -3.4397 10 14 4.7301 -3.0650 -2.9057 11 1 3.9314 -4.1788 -2.3337 12 1 4.8503 -3.2457 -4.3748 13 1 6.0837 -3.0621 -2.2950 14 6 4.2884 1.3996 -2.4129 15 6 5.7390 1.8775 -2.3230 16 6 6.0647 2.7499 -3.5370 17 6 7.4934 3.2212 -3.4481 18 6 7.7904 4.4087 -2.8046 19 6 9.0999 4.8439 -2.7219 20 6 10.1162 4.0898 -3.2763 21 6 9.8203 2.9009 -3.9268 22 8 10.8175 2.1601 -4.4779 23 6 12.1473 2.6686 -4.3551 24 6 8.5051 2.4664 -4.0091 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5682 0.8426 31 1 3.9786 2.1762 0.0903 32 1 2.9248 -1.3555 -4.2858 33 1 3.6221 2.2620 -2.4294 34 1 4.1531 0.8185 -3.3252 35 1 6.4054 1.0150 -2.3067 36 1 5.8742 2.4585 -1.4108 37 1 5.3984 3.6124 -3.5538 38 1 5.9296 2.1685 -4.4491 39 1 6.9979 4.9974 -2.3668 40 1 9.3293 5.7719 -2.2192 41 1 11.1396 4.4278 -3.2071 42 1 12.4032 2.7655 -3.3000 43 1 12.8445 1.9827 -4.8362 44 1 12.2085 3.6454 -4.8350 45 1 8.2726 1.5392 -4.5116 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459542501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:11 Heat of formation + Delta-G solvation = -42.858325 kcal Electronic energy + Delta-G solvation = -23459.892123 eV Core-core repulsion = 20057.566208 eV Total energy + Delta-G solvation = -3402.325916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.06682 -37.73996 -37.13385 -35.62726 -33.37861 -31.40937 -30.62349 -29.75699 -28.01442 -27.32947 -25.53851 -25.35532 -23.21312 -22.42623 -21.74207 -20.48973 -19.60852 -17.66580 -16.58157 -16.21807 -15.88759 -15.76579 -15.55872 -15.10433 -14.65616 -14.36078 -13.98590 -13.90744 -13.58887 -13.40059 -13.15476 -12.85262 -12.71581 -12.23146 -11.96841 -11.72441 -11.43366 -11.35329 -11.26359 -10.92432 -10.90967 -10.81101 -10.63968 -10.53939 -10.33259 -10.17214 -9.89550 -9.68062 -9.44293 -8.73099 -8.62124 -8.27478 -8.10083 -6.50759 -5.63979 -3.06205 1.45492 1.56383 3.26026 3.48187 3.55144 3.59609 3.88240 4.63488 4.74851 4.79474 4.91527 5.00206 5.02070 5.19614 5.31668 5.43936 5.46525 5.50616 5.55901 5.65844 5.81760 5.85468 5.96823 6.05981 6.10182 6.19640 6.25449 6.26493 6.35353 6.36681 6.41547 6.47710 6.52435 6.53058 6.78914 6.81579 6.85807 6.97480 6.99903 7.31899 7.45088 7.81899 7.99513 8.15012 8.63447 9.34212 9.98573 10.52727 11.39654 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.003816 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.016818 B = 7335.523069 C = 8595.740040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.046 3.954 4 C 0.144 3.856 5 N -0.578 5.578 6 C -0.234 4.234 7 H 0.062 0.938 8 C 0.008 3.992 9 N -0.885 5.885 10 Si 0.886 3.114 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.145 3.855 15 C -0.126 4.126 16 C -0.082 4.082 17 C -0.025 4.025 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.222 4.222 21 C 0.125 3.875 22 O -0.319 6.319 23 C 0.029 3.971 24 C -0.149 4.149 25 H 0.022 0.978 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.019 0.981 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.250 0.750 33 H 0.017 0.983 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.053 0.947 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 11.702 0.505 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C -0.033 4.033 4 C 0.017 3.983 5 N -0.297 5.297 6 C -0.364 4.364 7 H 0.079 0.921 8 C -0.190 4.190 9 N -0.529 5.529 10 Si 0.715 3.285 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.018 3.982 15 C -0.166 4.166 16 C -0.120 4.120 17 C -0.025 4.025 18 C -0.175 4.175 19 C -0.100 4.100 20 C -0.241 4.241 21 C 0.080 3.920 22 O -0.232 6.232 23 C -0.066 4.066 24 C -0.168 4.168 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.947 11.272 0.249 15.036 hybrid contribution 0.308 -0.339 -0.143 0.480 sum 10.255 10.933 0.106 14.991 Atomic orbital electron populations 1.22568 0.83870 1.01487 0.98199 1.88151 1.16947 1.27186 1.94785 1.23343 0.98243 0.84672 0.97091 1.21018 0.89432 0.96341 0.91478 1.43887 1.74848 1.02989 1.08005 1.18948 1.39447 0.82297 0.95698 0.92070 1.24842 0.97951 0.97039 0.99211 1.70086 1.34013 1.40070 1.08748 0.86575 0.80295 0.84615 0.76968 1.21492 1.21743 1.20678 1.20967 0.89520 0.93138 0.94536 1.22193 1.01807 0.97945 0.94649 1.20690 0.90301 1.00092 1.00881 1.19939 0.95972 0.92999 0.93639 1.20976 0.96460 0.97445 1.02589 1.20859 0.92548 0.98788 0.97827 1.21104 0.99983 0.96947 1.06087 1.19028 0.88438 0.90653 0.93844 1.86084 1.15280 1.47875 1.73987 1.23002 0.81636 1.00247 1.01721 1.20398 0.89287 1.01965 1.05107 0.95962 0.95021 0.90737 0.96270 0.94560 0.93155 0.93214 0.94048 0.96449 0.88197 0.92075 0.93828 0.91321 0.90831 0.86005 0.86195 0.86032 0.92816 0.88482 0.92897 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.01 101.05 1.11 1.77 16 2 O -0.35 -8.10 10.18 -35.23 -0.36 -8.46 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.14 3.07 6.12 -4.04 -0.02 3.04 16 5 N -0.58 -14.32 2.45 -173.25 -0.42 -14.74 16 6 C -0.23 -6.50 8.98 -15.06 -0.14 -6.63 16 7 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 8 C 0.01 0.23 4.82 -17.43 -0.08 0.15 16 9 N -0.89 -25.66 11.44 55.49 0.63 -25.02 16 10 Si 0.89 22.18 29.63 -169.99 -5.04 17.15 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.14 3.31 5.27 -4.04 -0.02 3.29 16 15 C -0.13 -2.44 5.52 -26.73 -0.15 -2.59 16 16 C -0.08 -1.33 5.34 -27.88 -0.15 -1.48 16 17 C -0.03 -0.39 5.13 -104.64 -0.54 -0.92 16 18 C -0.16 -2.12 9.70 -39.56 -0.38 -2.51 16 19 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 20 C -0.22 -2.77 9.04 -39.43 -0.36 -3.12 16 21 C 0.13 1.81 6.69 -39.22 -0.26 1.55 16 22 O -0.32 -4.35 10.50 -19.44 -0.20 -4.55 16 23 C 0.03 0.26 9.81 101.05 0.99 1.25 16 24 C -0.15 -2.35 9.64 -39.43 -0.38 -2.73 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 31 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 34 H 0.10 2.61 5.31 -51.93 -0.28 2.34 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 38 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 42 H 0.05 0.42 7.65 -51.93 -0.40 0.03 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 45 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -31.67 371.81 -8.03 -39.70 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.70 Total: -0.52 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.54 Total: -9.16 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.21 Total: -39.76 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.56 Total: -13.01 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.04 Total: 17.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.67 -8.03 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459542501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.161 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds