Wall clock time and date at job start Tue Mar 31 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00748 * 2 1 4 4 C 1.52997 * 109.47692 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46903 * 64.99956 * 4 3 2 6 6 C 1.36937 * 119.99847 * 270.00311 * 5 4 3 7 7 H 1.07999 * 120.00370 * 329.23006 * 6 5 4 8 8 C 1.38815 * 119.99757 * 149.23634 * 6 5 4 9 9 N 1.31621 * 119.99941 * 332.69434 * 8 6 5 10 10 Si 1.86797 * 119.99961 * 152.69884 * 8 6 5 11 11 H 1.48503 * 109.47284 * 84.99622 * 10 8 6 12 12 H 1.48507 * 109.47247 * 204.99730 * 10 8 6 13 13 H 1.48498 * 109.47464 * 324.99436 * 10 8 6 14 14 C 1.46497 * 119.99697 * 90.00359 * 5 4 3 15 15 C 1.52997 * 109.47087 * 85.52693 * 14 5 4 16 16 C 1.53005 * 109.47069 * 179.97438 * 15 14 5 17 17 C 1.50703 * 109.46969 * 179.97438 * 16 15 14 18 18 C 1.38291 * 119.96949 * 270.02273 * 17 16 15 19 19 C 1.38243 * 120.10608 * 180.02562 * 18 17 16 20 20 C 1.38164 * 120.06033 * 359.67615 * 19 18 17 21 21 C 1.38709 * 119.94052 * 0.57550 * 20 19 18 22 22 O 1.35906 * 120.05582 * 179.72202 * 21 20 19 23 23 C 1.42894 * 116.99977 * 359.72719 * 22 21 20 24 24 C 1.38123 * 119.97030 * 90.00397 * 17 16 15 25 25 H 1.08997 * 109.47024 * 300.00252 * 1 2 3 26 26 H 1.09000 * 109.46963 * 59.99671 * 1 2 3 27 27 H 1.08994 * 109.47606 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46854 * 59.99759 * 3 2 1 29 29 H 1.09004 * 109.47195 * 300.00252 * 3 2 1 30 30 H 1.09001 * 109.47003 * 305.00728 * 4 3 2 31 31 H 1.08994 * 109.47599 * 185.00391 * 4 3 2 32 32 H 0.97003 * 119.99793 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47201 * 325.52578 * 14 5 4 34 34 H 1.09000 * 109.46934 * 205.52403 * 14 5 4 35 35 H 1.09003 * 109.47316 * 60.00162 * 15 14 5 36 36 H 1.09000 * 109.46997 * 299.99672 * 15 14 5 37 37 H 1.08995 * 109.46933 * 60.00060 * 16 15 14 38 38 H 1.09000 * 109.47220 * 299.99874 * 16 15 14 39 39 H 1.07998 * 119.94437 * 359.97438 * 18 17 16 40 40 H 1.08007 * 119.97100 * 179.97438 * 19 18 17 41 41 H 1.08001 * 120.02962 * 180.30522 * 20 19 18 42 42 H 1.09003 * 109.47214 * 60.00087 * 23 22 21 43 43 H 1.09001 * 109.47428 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47104 * 300.00180 * 23 22 21 45 45 H 1.07995 * 120.03019 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9767 0.5637 -1.2509 6 6 4.0977 -0.7977 -1.3344 7 1 4.3619 -1.3712 -0.4583 8 6 3.8808 -1.4408 -2.5454 9 7 3.0767 -0.9060 -3.4397 10 14 4.7301 -3.0650 -2.9057 11 1 3.9314 -4.1788 -2.3337 12 1 4.8503 -3.2457 -4.3748 13 1 6.0837 -3.0621 -2.2950 14 6 4.2884 1.3996 -2.4129 15 6 5.7390 1.8775 -2.3230 16 6 6.0647 2.7499 -3.5370 17 6 7.4934 3.2212 -3.4481 18 6 7.7904 4.4087 -2.8046 19 6 9.0999 4.8439 -2.7219 20 6 10.1162 4.0898 -3.2763 21 6 9.8203 2.9009 -3.9268 22 8 10.8175 2.1601 -4.4779 23 6 12.1473 2.6686 -4.3551 24 6 8.5051 2.4664 -4.0091 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5682 0.8426 31 1 3.9786 2.1762 0.0903 32 1 2.9248 -1.3555 -4.2858 33 1 3.6221 2.2620 -2.4294 34 1 4.1531 0.8185 -3.3252 35 1 6.4054 1.0150 -2.3067 36 1 5.8742 2.4585 -1.4108 37 1 5.3984 3.6124 -3.5538 38 1 5.9296 2.1685 -4.4491 39 1 6.9979 4.9974 -2.3668 40 1 9.3293 5.7719 -2.2192 41 1 11.1396 4.4278 -3.2071 42 1 12.4032 2.7655 -3.3000 43 1 12.8445 1.9827 -4.8362 44 1 12.2085 3.6454 -4.8350 45 1 8.2726 1.5392 -4.5116 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459542501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:10 Heat of formation + Delta-G solvation = -60.745542 kcal Electronic energy + Delta-G solvation = -23460.667771 eV Core-core repulsion = 20057.566208 eV Total energy + Delta-G solvation = -3403.101564 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.06496 -38.98568 -38.62297 -37.35157 -34.79309 -33.40551 -31.74094 -31.02651 -29.66729 -28.16041 -27.16158 -26.88170 -24.97589 -23.51146 -23.19968 -21.74482 -21.34850 -18.80716 -18.42482 -17.23714 -17.18058 -16.94939 -16.83365 -16.63286 -16.45145 -15.79278 -15.63857 -15.30657 -15.11884 -14.73951 -14.37805 -14.25344 -13.92172 -13.67022 -13.26446 -13.08749 -12.87314 -12.76677 -12.64929 -12.57575 -12.50406 -12.32106 -12.06208 -11.98559 -11.92524 -11.73318 -11.59619 -11.51287 -11.22292 -10.39760 -10.29568 -9.72719 -9.12361 -8.52423 -7.74538 -5.19066 0.39872 0.52427 1.45147 1.48235 1.56486 2.39248 2.58374 2.82747 3.18758 3.37413 3.70734 3.90343 3.92915 4.15861 4.24955 4.33360 4.39200 4.42045 4.47196 4.48649 4.56615 4.61323 4.61902 4.65675 4.70616 4.73832 4.77893 4.80108 4.83574 4.92089 4.96999 5.14726 5.15510 5.25051 5.31780 5.38263 5.51743 5.56780 5.76325 5.80318 5.88959 5.95232 6.49682 6.51361 6.64093 7.28124 7.99147 8.46740 9.25024 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.003816 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.016818 B = 7335.523069 C = 8595.740040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.050 3.950 4 C 0.139 3.861 5 N -0.594 5.594 6 C -0.236 4.236 7 H 0.049 0.951 8 C -0.035 4.035 9 N -0.911 5.911 10 Si 0.936 3.064 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.148 3.852 15 C -0.107 4.107 16 C -0.072 4.072 17 C -0.041 4.041 18 C -0.161 4.161 19 C -0.076 4.076 20 C -0.217 4.217 21 C 0.114 3.886 22 O -0.344 6.344 23 C 0.019 3.981 24 C -0.179 4.179 25 H 0.055 0.945 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.245 0.755 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.064 0.936 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.178 13.993 1.790 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.029 4.029 4 C 0.013 3.987 5 N -0.314 5.314 6 C -0.367 4.367 7 H 0.066 0.934 8 C -0.232 4.232 9 N -0.556 5.556 10 Si 0.765 3.235 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.022 3.978 15 C -0.146 4.146 16 C -0.110 4.110 17 C -0.041 4.041 18 C -0.180 4.180 19 C -0.094 4.094 20 C -0.236 4.236 21 C 0.069 3.931 22 O -0.258 6.258 23 C -0.075 4.075 24 C -0.197 4.197 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.083 0.917 43 H 0.133 0.867 44 H 0.087 0.913 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.240 13.578 1.548 17.695 hybrid contribution -0.037 -0.995 -0.485 1.107 sum 11.204 12.584 1.063 16.882 Atomic orbital electron populations 1.22717 0.81667 1.02379 0.99553 1.88077 1.19586 1.28781 1.95110 1.23269 0.97316 0.84115 0.98196 1.21190 0.90469 0.97492 0.89526 1.44078 1.75546 1.02358 1.09438 1.19031 1.38473 0.83886 0.95263 0.93364 1.25360 0.98808 0.99648 0.99368 1.70191 1.35344 1.41233 1.08845 0.85777 0.79358 0.81835 0.76481 1.21410 1.21896 1.20527 1.20872 0.91709 0.92539 0.92673 1.21886 0.98595 0.97412 0.96743 1.20531 0.91971 0.99899 0.98606 1.19835 0.94841 0.94235 0.95168 1.21228 0.97952 0.96691 1.02083 1.21292 0.91648 0.99685 0.96773 1.21477 1.01753 0.95746 1.04593 1.19162 0.88144 0.91553 0.94278 1.86052 1.16931 1.48791 1.74062 1.23335 0.79612 1.01594 1.02970 1.20428 0.90818 1.01935 1.06560 0.92638 0.95439 0.90242 0.92380 0.95896 0.93690 0.90153 0.94567 0.95568 0.91636 0.95111 0.92506 0.89458 0.92411 0.84204 0.82595 0.83010 0.91693 0.86665 0.91311 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 11.01 113.37 1.25 2.42 16 2 O -0.40 -18.00 10.18 -148.98 -1.52 -19.52 16 3 C 0.05 1.97 6.28 71.98 0.45 2.42 16 4 C 0.14 5.77 6.12 86.38 0.53 6.30 16 5 N -0.59 -29.72 2.45 -702.03 -1.72 -31.44 16 6 C -0.24 -13.37 8.98 84.03 0.75 -12.62 16 7 H 0.05 2.81 7.96 -2.91 -0.02 2.79 16 8 C -0.04 -2.04 4.82 84.86 0.41 -1.63 16 9 N -0.91 -54.46 11.44 21.65 0.25 -54.21 16 10 Si 0.94 46.93 29.63 68.60 2.03 48.96 16 11 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 13 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 14 C 0.15 6.88 5.27 86.38 0.46 7.34 16 15 C -0.11 -4.18 5.52 30.59 0.17 -4.01 16 16 C -0.07 -2.37 5.34 29.85 0.16 -2.21 16 17 C -0.04 -1.23 5.13 -19.88 -0.10 -1.34 16 18 C -0.16 -3.99 9.70 22.28 0.22 -3.78 16 19 C -0.08 -1.58 10.04 22.25 0.22 -1.36 16 20 C -0.22 -4.78 9.04 22.36 0.20 -4.58 16 21 C 0.11 3.21 6.69 22.51 0.15 3.36 16 22 O -0.34 -9.21 10.50 -92.49 -0.97 -10.18 16 23 C 0.02 0.29 9.81 113.37 1.11 1.41 16 24 C -0.18 -5.80 9.64 22.37 0.22 -5.59 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 31 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.03 1.14 8.10 -2.39 -0.02 1.12 16 34 H 0.07 3.57 5.31 -2.39 -0.01 3.55 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 2.51 8.08 -2.39 -0.02 2.49 16 38 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 39 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.15 2.34 6.30 -2.91 -0.02 2.33 16 42 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 43 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 45 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -70.56 371.81 5.21 -65.36 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.94 Total: 14.89 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 6.19 Total: -13.87 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.47 Total: -85.65 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -2.49 Total: -29.70 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -70.56 5.21 -65.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459542501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.614 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds