Wall clock time and date at job start Tue Mar 31 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00145 * 2 1 4 4 C 1.50698 * 109.46963 * 66.04444 * 3 2 1 5 5 O 1.21284 * 120.00109 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00071 * 179.97438 * 4 3 2 7 7 C 1.46505 * 120.00027 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.46601 * 269.99824 * 7 6 4 9 9 H 1.07993 * 120.00722 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99815 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99785 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00047 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47381 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47431 * 120.00254 * 12 10 8 15 15 H 1.48508 * 109.47128 * 239.99818 * 12 10 8 16 16 C 1.46503 * 119.99890 * 0.02562 * 6 4 3 17 17 C 1.53005 * 109.46744 * 90.00046 * 16 6 4 18 18 C 1.47202 * 109.46953 * 179.97438 * 17 16 6 19 19 N 6.68962 * 104.77852 * 339.68693 * 2 1 3 20 20 C 1.46903 * 110.99964 * 236.04742 * 2 1 3 21 21 H 1.09003 * 115.55027 * 80.03129 * 20 2 1 22 22 C 1.52996 * 117.50031 * 294.35598 * 20 2 1 23 23 C 1.53000 * 60.00339 * 252.51025 * 22 20 2 24 24 C 1.52998 * 117.49711 * 252.51190 * 23 22 20 25 25 C 1.52999 * 117.49713 * 107.48353 * 23 22 20 26 26 H 1.09004 * 109.47487 * 54.04782 * 1 2 3 27 27 H 1.09000 * 109.47133 * 174.04628 * 1 2 3 28 28 H 1.08999 * 109.47351 * 294.04442 * 1 2 3 29 29 H 1.09000 * 109.47365 * 306.04903 * 3 2 1 30 30 H 1.09004 * 109.47394 * 186.04495 * 3 2 1 31 31 H 1.08992 * 109.47222 * 30.00034 * 7 6 4 32 32 H 1.09004 * 109.47190 * 150.00157 * 7 6 4 33 33 H 0.97000 * 119.99561 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.47393 * 330.00158 * 16 6 4 35 35 H 1.09003 * 109.47077 * 209.99354 * 16 6 4 36 36 H 1.08998 * 109.47084 * 59.99923 * 17 16 6 37 37 H 1.08995 * 109.46967 * 299.99770 * 17 16 6 38 38 H 1.09008 * 117.49573 * 0.02562 * 22 20 2 39 39 H 1.09000 * 117.50238 * 145.01850 * 22 20 2 40 40 H 1.09002 * 109.46700 * 128.62790 * 24 23 22 41 41 H 1.09004 * 109.46618 * 248.61330 * 24 23 22 42 42 H 1.08998 * 109.47485 * 8.61953 * 24 23 22 43 43 H 1.09000 * 109.47212 * 355.27217 * 25 23 22 44 44 H 1.09004 * 109.46694 * 115.27054 * 25 23 22 45 45 H 1.08999 * 109.47531 * 235.26778 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0188 3.3198 1.5237 7 6 1.6707 3.9765 2.7863 8 6 0.3392 4.6675 2.6425 9 1 -0.1945 4.6217 1.7048 10 6 -0.1981 5.3573 3.7086 11 7 0.4511 5.4118 4.8511 12 14 -1.8489 6.2132 3.5307 13 1 -2.3704 6.0022 2.1564 14 1 -2.8069 5.6507 4.5160 15 1 -1.6814 7.6680 3.7782 16 6 2.7821 4.0466 0.5061 17 6 1.8171 4.7725 -0.4334 18 6 2.5840 5.5033 -1.4555 19 7 3.1753 6.0661 -2.2455 20 6 1.9954 -0.7660 -1.1376 21 1 2.0049 -0.2417 -2.0933 22 6 1.7261 -2.2719 -1.1606 23 6 3.1330 -1.7509 -0.8603 24 6 4.1972 -1.9247 -1.9457 25 6 3.6350 -1.8626 0.5806 26 1 -0.3634 0.6034 -0.8319 27 1 -0.3633 -1.0221 -0.1066 28 1 -0.3634 0.4187 0.9385 29 1 1.5611 1.9274 -0.8309 30 1 3.0797 1.3444 -0.1082 31 1 1.6094 3.2308 3.5788 32 1 2.4361 4.7110 3.0369 33 1 0.0733 5.8974 5.6010 34 1 3.3862 3.3428 -0.0665 35 1 3.4333 4.7740 0.9910 36 1 1.2129 5.4762 0.1392 37 1 1.1659 4.0452 -0.9182 38 1 1.1578 -2.6942 -0.3317 39 1 1.5587 -2.7385 -2.1313 40 1 4.6842 -0.9678 -2.1335 41 1 4.9392 -2.6510 -1.6139 42 1 3.7265 -2.2791 -2.8627 43 1 2.8355 -2.2447 1.2154 44 1 4.4851 -2.5440 0.6173 45 1 3.9422 -0.8790 0.9357 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489415265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:21 Heat of formation + Delta-G solvation = 21.872636 kcal Electronic energy + Delta-G solvation = -24150.496331 eV Core-core repulsion = 20783.270112 eV Total energy + Delta-G solvation = -3367.226219 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68872 -38.58385 -36.78469 -35.38337 -34.62084 -32.82895 -30.75136 -29.41466 -28.30259 -27.49185 -26.81085 -24.81036 -23.82831 -22.50950 -20.77819 -18.93804 -18.50726 -17.56330 -16.62511 -16.28368 -16.04420 -15.52722 -14.87428 -14.69486 -14.53582 -14.37558 -13.94462 -13.64350 -13.56378 -13.24873 -13.07644 -12.69240 -12.50762 -12.38579 -12.35568 -12.15054 -12.09563 -11.80121 -11.73978 -11.49852 -11.33300 -11.25557 -11.11572 -10.94682 -10.80635 -10.60461 -10.16750 -10.04841 -9.71628 -9.65320 -8.92500 -8.48877 -8.13899 -7.81520 -6.10212 -4.15297 2.81080 2.90637 3.26076 3.32153 3.35334 3.38770 3.49286 3.60117 3.98439 4.31001 4.42497 4.71822 4.75851 4.96220 5.00571 5.05937 5.11058 5.24342 5.25522 5.36664 5.41883 5.51055 5.56794 5.57706 5.61374 5.72272 5.75504 5.83889 5.89404 5.94288 5.98964 6.03575 6.16034 6.17104 6.40769 6.46991 6.89076 7.09004 7.22797 7.40079 7.45334 7.66543 7.85752 8.15740 8.29363 8.84201 9.03351 9.50493 10.97876 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.004481 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.383302 B = 6247.624683 C = 7298.568599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.492 5.492 3 C 0.038 3.962 4 C 0.510 3.490 5 O -0.514 6.514 6 N -0.600 5.600 7 C 0.245 3.755 8 C -0.528 4.528 9 H 0.060 0.940 10 C 0.063 3.937 11 N -0.891 5.891 12 Si 0.894 3.106 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.124 3.876 17 C -0.053 4.053 18 C 0.219 3.781 19 N -0.453 5.453 20 C 0.009 3.991 21 H 0.083 0.917 22 C -0.162 4.162 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.100 4.100 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 -11.450 -12.414 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.215 5.215 3 C -0.093 4.093 4 C 0.296 3.704 5 O -0.389 6.389 6 N -0.333 5.333 7 C 0.127 3.873 8 C -0.567 4.567 9 H 0.078 0.922 10 C -0.139 4.139 11 N -0.530 5.530 12 Si 0.722 3.278 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.003 4.003 17 C -0.095 4.095 18 C -0.099 4.099 19 N -0.131 5.131 20 C -0.100 4.100 21 H 0.101 0.899 22 C -0.199 4.199 23 C -0.113 4.113 24 C -0.173 4.173 25 C -0.157 4.157 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.720 -11.085 -12.477 17.643 hybrid contribution -1.556 0.913 -0.578 1.895 sum 4.164 -10.173 -13.056 17.067 Atomic orbital electron populations 1.22544 0.86125 1.01305 1.02544 1.61369 1.08567 1.11866 1.39719 1.22097 1.01382 0.89416 0.96433 1.20147 0.80224 0.81743 0.88307 1.90654 1.38392 1.63673 1.46200 1.48231 1.54277 1.11800 1.18992 1.19349 0.95669 0.92749 0.79575 1.21451 1.04619 1.32202 0.98399 0.92184 1.24922 0.97484 0.96438 0.95072 1.69934 1.38542 1.42159 1.02380 0.86515 0.83991 0.79076 0.78255 1.19761 1.20919 1.21043 1.21249 0.92763 0.96286 0.89997 1.20006 0.97557 0.99782 0.92121 1.29293 0.93542 0.93293 0.93745 1.81185 1.10043 1.10409 1.11418 1.22565 1.03404 0.90902 0.93092 0.89935 1.23315 0.98943 0.94965 1.02723 1.21708 0.89643 1.02816 0.97162 1.21383 0.97524 1.01693 0.96672 1.21132 1.00261 1.01691 0.92616 0.96350 0.91936 0.88605 0.92567 0.88595 0.93595 0.94845 0.92723 0.91048 0.89457 0.85133 0.87961 0.88219 0.89006 0.92317 0.92039 0.92729 0.92009 0.93281 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.16 60.06 0.55 0.86 16 2 N -0.49 -6.75 4.00 -236.33 -0.94 -7.69 16 3 C 0.04 0.51 4.00 -4.98 -0.02 0.49 16 4 C 0.51 9.28 7.43 -10.99 -0.08 9.20 16 5 O -0.51 -11.67 13.89 5.55 0.08 -11.59 16 6 N -0.60 -10.80 2.46 -175.05 -0.43 -11.23 16 7 C 0.25 5.72 5.20 -5.19 -0.03 5.69 16 8 C -0.53 -13.35 8.92 -34.44 -0.31 -13.66 16 9 H 0.06 1.47 7.42 -52.49 -0.39 1.08 16 10 C 0.06 1.68 5.46 -17.81 -0.10 1.59 16 11 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 12 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.12 1.63 5.21 -4.04 -0.02 1.61 16 17 C -0.05 -0.66 6.03 -29.51 -0.18 -0.83 16 18 C 0.22 2.89 15.43 -20.76 -0.32 2.57 16 19 N -0.45 -7.01 18.54 42.15 0.78 -6.23 16 20 C 0.01 0.10 4.76 -67.71 -0.32 -0.22 16 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 22 C -0.16 -1.60 9.04 -26.73 -0.24 -1.84 16 23 C -0.11 -1.14 2.70 -154.51 -0.42 -1.56 16 24 C -0.12 -0.94 9.85 37.16 0.37 -0.58 16 25 C -0.10 -1.12 9.34 37.16 0.35 -0.77 16 26 H 0.02 0.24 8.06 -51.93 -0.42 -0.18 16 27 H 0.06 0.78 7.23 -51.93 -0.38 0.41 16 28 H 0.10 1.67 6.01 -51.93 -0.31 1.35 16 29 H 0.06 0.67 7.11 -51.93 -0.37 0.30 16 30 H 0.10 1.14 7.34 -51.93 -0.38 0.76 16 31 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 32 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.07 0.75 6.44 -51.93 -0.33 0.42 16 35 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 36 H 0.13 1.84 7.26 -51.93 -0.38 1.46 16 37 H 0.10 1.11 7.22 -51.93 -0.38 0.74 16 38 H 0.10 1.06 7.76 -51.92 -0.40 0.66 16 39 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.46 7.89 -51.93 -0.41 0.05 16 42 H 0.05 0.40 7.90 -51.93 -0.41 -0.01 16 43 H 0.06 0.77 7.88 -51.93 -0.41 0.36 16 44 H 0.05 0.47 7.87 -51.93 -0.41 0.06 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -30.75 372.94 -7.35 -38.10 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.40 Total: -0.74 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.77 Total: 2.56 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.14 Total: -49.50 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.75 -7.35 -38.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489415265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.969 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds