Wall clock time and date at job start Tue Mar 31 2020 07:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00145 * 2 1 4 4 C 1.50698 * 109.46963 * 66.04444 * 3 2 1 5 5 O 1.21284 * 120.00109 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00071 * 179.97438 * 4 3 2 7 7 C 1.46505 * 120.00027 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.46601 * 269.99824 * 7 6 4 9 9 H 1.07993 * 120.00722 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99815 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99785 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00047 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47381 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47431 * 120.00254 * 12 10 8 15 15 H 1.48508 * 109.47128 * 239.99818 * 12 10 8 16 16 C 1.46503 * 119.99890 * 0.02562 * 6 4 3 17 17 C 1.53005 * 109.46744 * 90.00046 * 16 6 4 18 18 C 1.47202 * 109.46953 * 179.97438 * 17 16 6 19 19 N 6.68962 * 104.77852 * 339.68693 * 2 1 3 20 20 C 1.46903 * 110.99964 * 236.04742 * 2 1 3 21 21 H 1.09003 * 115.55027 * 80.03129 * 20 2 1 22 22 C 1.52996 * 117.50031 * 294.35598 * 20 2 1 23 23 C 1.53000 * 60.00339 * 252.51025 * 22 20 2 24 24 C 1.52998 * 117.49711 * 252.51190 * 23 22 20 25 25 C 1.52999 * 117.49713 * 107.48353 * 23 22 20 26 26 H 1.09004 * 109.47487 * 54.04782 * 1 2 3 27 27 H 1.09000 * 109.47133 * 174.04628 * 1 2 3 28 28 H 1.08999 * 109.47351 * 294.04442 * 1 2 3 29 29 H 1.09000 * 109.47365 * 306.04903 * 3 2 1 30 30 H 1.09004 * 109.47394 * 186.04495 * 3 2 1 31 31 H 1.08992 * 109.47222 * 30.00034 * 7 6 4 32 32 H 1.09004 * 109.47190 * 150.00157 * 7 6 4 33 33 H 0.97000 * 119.99561 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.47393 * 330.00158 * 16 6 4 35 35 H 1.09003 * 109.47077 * 209.99354 * 16 6 4 36 36 H 1.08998 * 109.47084 * 59.99923 * 17 16 6 37 37 H 1.08995 * 109.46967 * 299.99770 * 17 16 6 38 38 H 1.09008 * 117.49573 * 0.02562 * 22 20 2 39 39 H 1.09000 * 117.50238 * 145.01850 * 22 20 2 40 40 H 1.09002 * 109.46700 * 128.62790 * 24 23 22 41 41 H 1.09004 * 109.46618 * 248.61330 * 24 23 22 42 42 H 1.08998 * 109.47485 * 8.61953 * 24 23 22 43 43 H 1.09000 * 109.47212 * 355.27217 * 25 23 22 44 44 H 1.09004 * 109.46694 * 115.27054 * 25 23 22 45 45 H 1.08999 * 109.47531 * 235.26778 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0188 3.3198 1.5237 7 6 1.6707 3.9765 2.7863 8 6 0.3392 4.6675 2.6425 9 1 -0.1945 4.6217 1.7048 10 6 -0.1981 5.3573 3.7086 11 7 0.4511 5.4118 4.8511 12 14 -1.8489 6.2132 3.5307 13 1 -2.3704 6.0022 2.1564 14 1 -2.8069 5.6507 4.5160 15 1 -1.6814 7.6680 3.7782 16 6 2.7821 4.0466 0.5061 17 6 1.8171 4.7725 -0.4334 18 6 2.5840 5.5033 -1.4555 19 7 3.1753 6.0661 -2.2455 20 6 1.9954 -0.7660 -1.1376 21 1 2.0049 -0.2417 -2.0933 22 6 1.7261 -2.2719 -1.1606 23 6 3.1330 -1.7509 -0.8603 24 6 4.1972 -1.9247 -1.9457 25 6 3.6350 -1.8626 0.5806 26 1 -0.3634 0.6034 -0.8319 27 1 -0.3633 -1.0221 -0.1066 28 1 -0.3634 0.4187 0.9385 29 1 1.5611 1.9274 -0.8309 30 1 3.0797 1.3444 -0.1082 31 1 1.6094 3.2308 3.5788 32 1 2.4361 4.7110 3.0369 33 1 0.0733 5.8974 5.6010 34 1 3.3862 3.3428 -0.0665 35 1 3.4333 4.7740 0.9910 36 1 1.2129 5.4762 0.1392 37 1 1.1659 4.0452 -0.9182 38 1 1.1578 -2.6942 -0.3317 39 1 1.5587 -2.7385 -2.1313 40 1 4.6842 -0.9678 -2.1335 41 1 4.9392 -2.6510 -1.6139 42 1 3.7265 -2.2791 -2.8627 43 1 2.8355 -2.2447 1.2154 44 1 4.4851 -2.5440 0.6173 45 1 3.9422 -0.8790 0.9357 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489415265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:20 Heat of formation + Delta-G solvation = 3.702468 kcal Electronic energy + Delta-G solvation = -24151.284249 eV Core-core repulsion = 20783.270112 eV Total energy + Delta-G solvation = -3368.014137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95731 -39.60536 -37.97042 -36.72774 -35.75074 -34.74437 -32.08943 -30.53282 -29.48677 -28.28129 -28.23686 -26.02044 -25.14208 -24.11180 -21.67397 -19.87939 -19.76089 -18.96891 -18.06190 -17.79238 -17.21236 -16.84862 -16.23581 -16.02602 -15.65134 -15.58742 -15.06190 -14.85257 -14.49932 -14.41600 -14.16942 -14.04254 -13.74625 -13.52777 -13.48954 -13.33999 -13.18589 -13.02430 -12.88517 -12.75159 -12.59764 -12.51444 -12.48012 -12.39110 -12.12570 -11.90707 -11.74675 -11.52261 -10.85542 -10.63581 -10.54887 -10.28310 -9.43509 -9.12612 -8.12880 -6.24608 1.42723 1.45753 1.55176 1.69360 1.84320 1.99494 2.21659 2.46807 2.78879 2.94407 3.19302 3.21448 3.81731 3.94504 3.99540 4.05055 4.12741 4.20293 4.32523 4.35780 4.40397 4.56216 4.57708 4.68041 4.81452 4.87102 4.90288 4.96369 5.04181 5.10693 5.16357 5.18555 5.19201 5.21525 5.26072 5.38951 5.40071 5.61977 5.68619 5.90950 6.02318 6.17006 6.28000 6.60684 6.81794 6.88365 7.41000 7.61708 8.94658 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.004481 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.383302 B = 6247.624683 C = 7298.568599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.512 5.512 3 C 0.050 3.950 4 C 0.504 3.496 5 O -0.569 6.569 6 N -0.601 5.601 7 C 0.260 3.740 8 C -0.526 4.526 9 H 0.068 0.932 10 C 0.009 3.991 11 N -0.931 5.931 12 Si 0.956 3.044 13 H -0.259 1.259 14 H -0.290 1.290 15 H -0.278 1.278 16 C 0.119 3.881 17 C -0.042 4.042 18 C 0.247 3.753 19 N -0.488 5.488 20 C 0.003 3.997 21 H 0.101 0.899 22 C -0.157 4.157 23 C -0.112 4.112 24 C -0.111 4.111 25 C -0.098 4.098 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.119 0.881 31 H -0.003 1.003 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -11.895 -15.627 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.236 5.236 3 C -0.080 4.080 4 C 0.292 3.708 5 O -0.447 6.447 6 N -0.332 5.332 7 C 0.139 3.861 8 C -0.565 4.565 9 H 0.086 0.914 10 C -0.190 4.190 11 N -0.572 5.572 12 Si 0.781 3.219 13 H -0.183 1.183 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.006 4.006 17 C -0.083 4.083 18 C -0.070 4.070 19 N -0.166 5.166 20 C -0.105 4.105 21 H 0.119 0.881 22 C -0.194 4.194 23 C -0.112 4.112 24 C -0.169 4.169 25 C -0.156 4.156 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.137 0.863 31 H 0.015 0.985 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.035 -11.523 -15.746 20.424 hybrid contribution -1.606 0.980 0.465 1.938 sum 4.429 -10.543 -15.281 19.086 Atomic orbital electron populations 1.22366 0.86751 1.01858 1.00831 1.61250 1.08271 1.12244 1.41853 1.22033 1.02818 0.89382 0.93800 1.21072 0.78928 0.81312 0.89460 1.90642 1.40808 1.64896 1.48391 1.48110 1.54617 1.12209 1.18310 1.18791 0.95029 0.91121 0.81131 1.21796 1.05163 1.31136 0.98427 0.91369 1.25752 1.00846 0.97504 0.94902 1.70063 1.40325 1.43528 1.03239 0.85540 0.79749 0.78056 0.78522 1.18277 1.21697 1.20417 1.21518 0.92706 0.97058 0.89295 1.19875 0.97150 0.99686 0.91571 1.29162 0.92552 0.92342 0.92953 1.81232 1.11153 1.11467 1.12753 1.22648 1.04097 0.91151 0.92651 0.88149 1.23358 0.98500 0.94192 1.03337 1.21776 0.90259 1.02310 0.96904 1.21377 0.96985 1.02195 0.96294 1.21091 1.00153 1.00958 0.93372 0.95012 0.90916 0.92606 0.89732 0.86268 0.98463 0.95650 0.92847 0.87225 0.89382 0.86683 0.85654 0.89590 0.86813 0.91908 0.91474 0.91464 0.94057 0.91780 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.16 127.69 1.17 1.98 16 2 N -0.51 -13.24 4.00 -901.62 -3.60 -16.85 16 3 C 0.05 1.23 4.00 85.56 0.34 1.58 16 4 C 0.50 18.19 7.43 87.66 0.65 18.84 16 5 O -0.57 -26.85 13.89 -3.04 -0.04 -26.90 16 6 N -0.60 -21.37 2.46 -826.13 -2.03 -23.39 16 7 C 0.26 12.54 5.20 85.63 0.45 12.99 16 8 C -0.53 -26.94 8.92 25.60 0.23 -26.72 16 9 H 0.07 3.30 7.42 -2.91 -0.02 3.28 16 10 C 0.01 0.46 5.46 84.66 0.46 0.92 16 11 N -0.93 -53.97 13.29 21.45 0.28 -53.69 16 12 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 13 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 14 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 16 C 0.12 2.86 5.21 86.38 0.45 3.31 16 17 C -0.04 -0.91 6.03 28.79 0.17 -0.73 16 18 C 0.25 5.83 15.43 89.44 1.38 7.21 16 19 N -0.49 -14.00 18.54 20.01 0.37 -13.62 16 20 C 0.00 0.05 4.76 44.92 0.21 0.27 16 21 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 22 C -0.16 -2.70 9.04 30.59 0.28 -2.42 16 23 C -0.11 -1.97 2.70 -52.18 -0.14 -2.11 16 24 C -0.11 -1.42 9.85 71.98 0.71 -0.71 16 25 C -0.10 -2.11 9.34 71.98 0.67 -1.43 16 26 H 0.03 0.76 8.06 -2.38 -0.02 0.74 16 27 H 0.07 1.77 7.23 -2.39 -0.02 1.75 16 28 H 0.06 1.99 6.01 -2.39 -0.01 1.98 16 29 H 0.09 1.63 7.11 -2.39 -0.02 1.61 16 30 H 0.12 2.39 7.34 -2.39 -0.02 2.37 16 31 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 32 H 0.03 1.25 7.89 -2.39 -0.02 1.23 16 33 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.11 1.86 6.44 -2.39 -0.02 1.84 16 35 H 0.09 2.15 7.89 -2.39 -0.02 2.13 16 36 H 0.12 3.01 7.26 -2.39 -0.02 2.99 16 37 H 0.13 2.22 7.22 -2.39 -0.02 2.20 16 38 H 0.09 1.73 7.76 -2.38 -0.02 1.71 16 39 H 0.11 1.47 8.05 -2.39 -0.02 1.45 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.79 7.89 -2.38 -0.02 0.77 16 42 H 0.07 0.70 7.90 -2.39 -0.02 0.68 16 43 H 0.04 1.03 7.88 -2.39 -0.02 1.01 16 44 H 0.06 1.14 7.87 -2.39 -0.02 1.12 16 45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.07 372.94 5.01 -65.06 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.97 Total: 11.96 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 7.03 Total: 12.97 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.98 Total: -107.55 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.04 Total: -26.90 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -70.07 5.01 -65.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489415265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.766 kcal (2) G-P(sol) polarization free energy of solvation -70.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds