Wall clock time and date at job start Tue Mar 31 2020 07:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00498 * 2 1 4 4 C 1.50708 * 109.46823 * 71.77364 * 3 2 1 5 5 O 1.21278 * 120.00054 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99917 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99957 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46853 * 269.99489 * 7 6 4 9 9 H 1.08001 * 120.00304 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99755 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99730 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 119.99928 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47241 * 90.00386 * 12 10 8 14 14 H 1.48507 * 109.47102 * 210.00086 * 12 10 8 15 15 H 1.48502 * 109.47369 * 329.99735 * 12 10 8 16 16 C 1.46507 * 119.99862 * 359.97438 * 6 4 3 17 17 C 1.53000 * 109.47377 * 270.00400 * 16 6 4 18 18 C 1.47196 * 109.47136 * 180.02562 * 17 16 6 19 19 N 6.68962 * 127.34717 * 346.13785 * 2 1 3 20 20 C 1.46898 * 111.00019 * 236.04214 * 2 1 3 21 21 H 1.08993 * 115.55195 * 341.56690 * 20 2 1 22 22 C 1.53008 * 117.49562 * 127.23043 * 20 2 1 23 23 C 1.52997 * 117.50244 * 195.88743 * 20 2 1 24 24 C 1.52999 * 117.49806 * 0.02562 * 23 20 2 25 25 C 1.53001 * 117.50061 * 145.00286 * 23 20 2 26 26 H 1.09001 * 109.47306 * 64.78846 * 1 2 3 27 27 H 1.08994 * 109.47329 * 184.79196 * 1 2 3 28 28 H 1.09008 * 109.47010 * 304.79056 * 1 2 3 29 29 H 1.09005 * 109.46943 * 311.78283 * 3 2 1 30 30 H 1.08994 * 109.47863 * 191.77447 * 3 2 1 31 31 H 1.09000 * 109.47134 * 29.99773 * 7 6 4 32 32 H 1.09006 * 109.46978 * 150.00135 * 7 6 4 33 33 H 0.96994 * 120.00006 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.46828 * 150.00234 * 16 6 4 35 35 H 1.09000 * 109.46983 * 30.00500 * 16 6 4 36 36 H 1.08997 * 109.46989 * 59.99385 * 17 16 6 37 37 H 1.08998 * 109.46683 * 300.00254 * 17 16 6 38 38 H 1.09002 * 117.49729 * 214.98234 * 22 20 2 39 39 H 1.08995 * 117.49873 * 359.97438 * 22 20 2 40 40 H 1.09000 * 109.47314 * 54.20294 * 24 23 20 41 41 H 1.09006 * 109.47379 * 174.20357 * 24 23 20 42 42 H 1.09003 * 109.47024 * 294.20240 * 24 23 20 43 43 H 1.08997 * 109.46886 * 59.99736 * 25 23 20 44 44 H 1.09002 * 109.47199 * 180.02562 * 25 23 20 45 45 H 1.09000 * 109.46719 * 300.00160 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7607 1.9996 1.3496 5 8 1.2094 1.3670 2.2253 6 7 2.1633 3.2644 1.5834 7 6 1.9355 3.8749 2.8955 8 6 0.5971 4.5675 2.9017 9 1 -0.0221 4.5539 2.0169 10 6 0.1630 5.2185 4.0370 11 7 -1.0052 5.8225 4.0426 12 14 1.2343 5.2426 5.5670 13 1 2.1262 6.4293 5.5282 14 1 0.3719 5.3109 6.7741 15 1 2.0564 4.0068 5.6154 16 6 2.8297 4.0284 0.5257 17 6 4.3408 3.8037 0.6090 18 6 5.0103 4.5717 -0.4533 19 7 5.5272 5.1632 -1.2741 20 6 1.9954 -0.7660 -1.1375 21 1 1.2930 -1.4558 -1.6052 22 6 3.0152 -0.0737 -2.0441 23 6 3.4671 -1.1813 -1.0891 24 6 4.2778 -0.7675 0.1407 25 6 3.8402 -2.5332 -1.7008 26 1 -0.3634 0.4377 -0.9298 27 1 -0.3634 -1.0240 0.0858 28 1 -0.3633 0.5864 0.8440 29 1 1.4865 1.9560 -0.7663 30 1 3.0649 1.3501 -0.2097 31 1 1.9479 3.1013 3.6633 32 1 2.7217 4.6019 3.0994 33 1 -1.3107 6.2802 4.8413 34 1 2.6125 5.0890 0.6519 35 1 2.4660 3.6962 -0.4466 36 1 4.5578 2.7430 0.4830 37 1 4.7044 4.1358 1.5814 38 1 2.9838 -0.3084 -3.1080 39 1 3.2950 0.9502 -1.7966 40 1 3.7713 -1.1114 1.0424 41 1 5.2707 -1.2145 0.0887 42 1 4.3693 0.3184 0.1670 43 1 3.5737 -2.5397 -2.7577 44 1 4.9128 -2.6963 -1.5951 45 1 3.2998 -3.3269 -1.1849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489415266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:23 Heat of formation + Delta-G solvation = 35.134138 kcal Electronic energy + Delta-G solvation = -24457.177517 eV Core-core repulsion = 21090.526359 eV Total energy + Delta-G solvation = -3366.651157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11099 -38.68420 -36.93610 -35.44718 -34.56791 -32.80678 -31.03329 -29.35003 -28.95620 -27.80252 -26.91604 -24.62308 -24.05964 -22.54416 -20.60885 -19.12521 -18.44363 -17.75779 -16.98469 -16.79383 -15.92761 -15.68502 -15.11163 -14.78254 -14.61836 -14.07054 -13.97465 -13.88949 -13.67438 -13.33598 -13.09081 -12.82722 -12.66674 -12.52964 -12.45639 -12.26520 -12.12904 -12.01558 -11.88508 -11.68672 -11.51681 -11.41160 -11.08566 -10.97671 -10.81873 -10.62008 -10.56930 -10.15793 -9.71712 -9.59510 -9.01347 -8.63044 -8.03386 -7.88898 -6.12417 -4.11874 2.65318 2.73658 3.23911 3.24992 3.29920 3.36162 3.37477 3.59960 3.90302 4.22605 4.36331 4.62130 4.65113 4.75864 4.86977 4.94386 5.01396 5.03071 5.17096 5.21753 5.32845 5.35531 5.47202 5.55239 5.62310 5.66152 5.68938 5.71976 5.75868 5.80239 5.87765 5.95089 5.99497 6.08757 6.27072 6.35469 6.54516 6.86806 6.99927 7.13568 7.22512 7.49949 7.56033 8.10647 8.41893 8.87978 8.93099 9.47461 11.00884 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.004914 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.338512 B = 5696.605867 C = 6844.258443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.487 5.487 3 C 0.023 3.977 4 C 0.511 3.489 5 O -0.511 6.511 6 N -0.595 5.595 7 C 0.216 3.784 8 C -0.531 4.531 9 H 0.074 0.926 10 C 0.073 3.927 11 N -0.896 5.896 12 Si 0.873 3.127 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.262 1.262 16 C 0.117 3.883 17 C -0.052 4.052 18 C 0.215 3.785 19 N -0.441 5.441 20 C 0.030 3.970 21 H 0.114 0.886 22 C -0.212 4.212 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.112 4.112 26 H 0.022 0.978 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.029 -12.286 -10.824 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.208 5.208 3 C -0.108 4.108 4 C 0.297 3.703 5 O -0.386 6.386 6 N -0.328 5.328 7 C 0.096 3.904 8 C -0.569 4.569 9 H 0.092 0.908 10 C -0.129 4.129 11 N -0.535 5.535 12 Si 0.700 3.300 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.187 1.187 16 C -0.010 4.010 17 C -0.093 4.093 18 C -0.103 4.103 19 N -0.118 5.118 20 C -0.080 4.080 21 H 0.132 0.868 22 C -0.251 4.251 23 C -0.119 4.119 24 C -0.167 4.167 25 C -0.169 4.169 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.480 -11.866 -10.970 19.261 hybrid contribution -0.058 0.460 0.312 0.559 sum 10.422 -11.406 -10.659 18.770 Atomic orbital electron populations 1.22513 0.85734 1.02670 1.01296 1.61322 1.08769 1.11568 1.39186 1.22428 1.02193 0.89960 0.96202 1.20208 0.79353 0.81438 0.89309 1.90678 1.40420 1.61360 1.46093 1.47887 1.57791 1.12519 1.14599 1.19704 0.97092 0.93617 0.80014 1.21307 1.01996 1.32999 1.00616 0.90759 1.24854 0.94941 0.94754 0.98376 1.69889 1.19282 1.35024 1.29264 0.86892 0.80868 0.78989 0.83271 1.20109 1.20992 1.18687 1.21329 0.88145 0.99591 0.91927 1.19917 0.96185 0.99018 0.94221 1.29053 0.93533 0.93656 0.94066 1.81225 1.09605 1.09853 1.11152 1.22837 0.91866 1.00395 0.92864 0.86827 1.23924 1.05910 0.98119 0.97158 1.21744 0.96582 0.95490 0.98118 1.21323 0.98289 1.00538 0.96578 1.21334 1.01379 0.94553 0.99681 0.95938 0.91399 0.89256 0.91943 0.87781 0.93768 0.95520 0.92529 0.88452 0.90583 0.87693 0.86523 0.88888 0.88269 0.90981 0.92830 0.92870 0.92729 0.92155 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.14 60.06 0.55 0.90 16 2 N -0.49 -6.60 4.14 -236.33 -0.98 -7.57 16 3 C 0.02 0.30 2.59 -4.97 -0.01 0.29 16 4 C 0.51 9.15 7.37 -10.98 -0.08 9.07 16 5 O -0.51 -11.47 14.41 5.56 0.08 -11.39 16 6 N -0.60 -10.42 2.46 -175.05 -0.43 -10.85 16 7 C 0.22 4.72 4.23 -5.20 -0.02 4.70 16 8 C -0.53 -14.25 9.94 -34.44 -0.34 -14.60 16 9 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 12 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 16 C 0.12 1.49 5.17 -4.04 -0.02 1.47 16 17 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 18 C 0.22 2.46 15.43 -20.76 -0.32 2.14 16 19 N -0.44 -6.24 18.54 42.16 0.78 -5.46 16 20 C 0.03 0.32 5.82 -67.71 -0.39 -0.07 16 21 H 0.11 1.11 7.95 -51.93 -0.41 0.70 16 22 C -0.21 -1.98 8.92 -26.69 -0.24 -2.21 16 23 C -0.12 -1.14 2.70 -154.47 -0.42 -1.56 16 24 C -0.11 -1.13 8.90 37.16 0.33 -0.80 16 25 C -0.11 -0.89 9.84 37.16 0.37 -0.53 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.54 6.35 -51.92 -0.33 1.21 16 29 H 0.06 0.78 7.31 -51.93 -0.38 0.40 16 30 H 0.10 1.15 2.61 -51.93 -0.14 1.01 16 31 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 32 H 0.03 0.53 7.50 -51.93 -0.39 0.14 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 35 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 36 H 0.11 0.82 7.22 -51.93 -0.38 0.45 16 37 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.10 0.92 5.68 -51.93 -0.29 0.62 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.47 7.84 -51.93 -0.41 0.06 16 42 H 0.05 0.53 5.83 -51.93 -0.30 0.23 16 43 H 0.05 0.39 7.90 -51.93 -0.41 -0.02 16 44 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -33.13 363.45 -6.90 -40.03 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.06 Total: -0.16 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.88 Total: 0.07 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.15 Total: -49.88 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.13 -6.90 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489415266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.161 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds