Wall clock time and date at job start Tue Mar 31 2020 07:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00498 * 2 1 4 4 C 1.50708 * 109.46823 * 71.77364 * 3 2 1 5 5 O 1.21278 * 120.00054 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99917 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99957 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46853 * 269.99489 * 7 6 4 9 9 H 1.08001 * 120.00304 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99755 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99730 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 119.99928 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47241 * 90.00386 * 12 10 8 14 14 H 1.48507 * 109.47102 * 210.00086 * 12 10 8 15 15 H 1.48502 * 109.47369 * 329.99735 * 12 10 8 16 16 C 1.46507 * 119.99862 * 359.97438 * 6 4 3 17 17 C 1.53000 * 109.47377 * 270.00400 * 16 6 4 18 18 C 1.47196 * 109.47136 * 180.02562 * 17 16 6 19 19 N 6.68962 * 127.34717 * 346.13785 * 2 1 3 20 20 C 1.46898 * 111.00019 * 236.04214 * 2 1 3 21 21 H 1.08993 * 115.55195 * 341.56690 * 20 2 1 22 22 C 1.53008 * 117.49562 * 127.23043 * 20 2 1 23 23 C 1.52997 * 117.50244 * 195.88743 * 20 2 1 24 24 C 1.52999 * 117.49806 * 0.02562 * 23 20 2 25 25 C 1.53001 * 117.50061 * 145.00286 * 23 20 2 26 26 H 1.09001 * 109.47306 * 64.78846 * 1 2 3 27 27 H 1.08994 * 109.47329 * 184.79196 * 1 2 3 28 28 H 1.09008 * 109.47010 * 304.79056 * 1 2 3 29 29 H 1.09005 * 109.46943 * 311.78283 * 3 2 1 30 30 H 1.08994 * 109.47863 * 191.77447 * 3 2 1 31 31 H 1.09000 * 109.47134 * 29.99773 * 7 6 4 32 32 H 1.09006 * 109.46978 * 150.00135 * 7 6 4 33 33 H 0.96994 * 120.00006 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.46828 * 150.00234 * 16 6 4 35 35 H 1.09000 * 109.46983 * 30.00500 * 16 6 4 36 36 H 1.08997 * 109.46989 * 59.99385 * 17 16 6 37 37 H 1.08998 * 109.46683 * 300.00254 * 17 16 6 38 38 H 1.09002 * 117.49729 * 214.98234 * 22 20 2 39 39 H 1.08995 * 117.49873 * 359.97438 * 22 20 2 40 40 H 1.09000 * 109.47314 * 54.20294 * 24 23 20 41 41 H 1.09006 * 109.47379 * 174.20357 * 24 23 20 42 42 H 1.09003 * 109.47024 * 294.20240 * 24 23 20 43 43 H 1.08997 * 109.46886 * 59.99736 * 25 23 20 44 44 H 1.09002 * 109.47199 * 180.02562 * 25 23 20 45 45 H 1.09000 * 109.46719 * 300.00160 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7607 1.9996 1.3496 5 8 1.2094 1.3670 2.2253 6 7 2.1633 3.2644 1.5834 7 6 1.9355 3.8749 2.8955 8 6 0.5971 4.5675 2.9017 9 1 -0.0221 4.5539 2.0169 10 6 0.1630 5.2185 4.0370 11 7 -1.0052 5.8225 4.0426 12 14 1.2343 5.2426 5.5670 13 1 2.1262 6.4293 5.5282 14 1 0.3719 5.3109 6.7741 15 1 2.0564 4.0068 5.6154 16 6 2.8297 4.0284 0.5257 17 6 4.3408 3.8037 0.6090 18 6 5.0103 4.5717 -0.4533 19 7 5.5272 5.1632 -1.2741 20 6 1.9954 -0.7660 -1.1375 21 1 1.2930 -1.4558 -1.6052 22 6 3.0152 -0.0737 -2.0441 23 6 3.4671 -1.1813 -1.0891 24 6 4.2778 -0.7675 0.1407 25 6 3.8402 -2.5332 -1.7008 26 1 -0.3634 0.4377 -0.9298 27 1 -0.3634 -1.0240 0.0858 28 1 -0.3633 0.5864 0.8440 29 1 1.4865 1.9560 -0.7663 30 1 3.0649 1.3501 -0.2097 31 1 1.9479 3.1013 3.6633 32 1 2.7217 4.6019 3.0994 33 1 -1.3107 6.2802 4.8413 34 1 2.6125 5.0890 0.6519 35 1 2.4660 3.6962 -0.4466 36 1 4.5578 2.7430 0.4830 37 1 4.7044 4.1358 1.5814 38 1 2.9838 -0.3084 -3.1080 39 1 3.2950 0.9502 -1.7966 40 1 3.7713 -1.1114 1.0424 41 1 5.2707 -1.2145 0.0887 42 1 4.3693 0.3184 0.1670 43 1 3.5737 -2.5397 -2.7577 44 1 4.9128 -2.6963 -1.5951 45 1 3.2998 -3.3269 -1.1849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489415266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:22 Heat of formation + Delta-G solvation = 13.389255 kcal Electronic energy + Delta-G solvation = -24458.120446 eV Core-core repulsion = 21090.526359 eV Total energy + Delta-G solvation = -3367.594086 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25049 -39.78007 -37.99900 -36.74787 -35.61439 -34.77638 -32.35740 -30.68999 -29.73676 -28.97809 -27.98165 -25.69904 -25.23638 -24.16102 -21.64344 -19.94180 -19.72742 -19.15611 -18.49742 -18.06399 -17.18942 -16.83208 -16.29395 -16.03028 -15.75013 -15.47545 -15.23090 -14.73191 -14.61955 -14.51151 -14.30474 -14.00819 -13.88141 -13.61498 -13.55161 -13.45742 -13.39158 -13.07845 -12.91543 -12.75037 -12.70637 -12.50324 -12.40208 -12.26650 -11.97891 -11.85682 -11.73068 -11.69037 -11.45373 -10.75066 -10.52042 -10.40174 -9.42611 -8.99247 -8.27065 -6.31356 1.38371 1.43252 1.53061 1.68080 1.84243 1.87840 2.17844 2.37708 2.71178 3.00587 3.09523 3.22724 3.75662 3.82907 3.90622 3.99076 4.01410 4.07205 4.15818 4.29722 4.34344 4.50476 4.57760 4.64683 4.72643 4.79882 4.86713 4.91614 4.96368 4.99586 5.02228 5.09812 5.11514 5.16809 5.18016 5.21339 5.41538 5.54358 5.58915 5.64940 5.94144 6.18781 6.31311 6.60538 6.71094 6.73545 7.29763 7.51908 8.89953 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.004914 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.338512 B = 5696.605867 C = 6844.258443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.505 5.505 3 C 0.036 3.964 4 C 0.505 3.495 5 O -0.565 6.565 6 N -0.597 5.597 7 C 0.224 3.776 8 C -0.532 4.532 9 H 0.028 0.972 10 C 0.009 3.991 11 N -0.950 5.950 12 Si 0.944 3.056 13 H -0.252 1.252 14 H -0.290 1.290 15 H -0.247 1.247 16 C 0.111 3.889 17 C -0.039 4.039 18 C 0.244 3.756 19 N -0.487 5.487 20 C 0.014 3.986 21 H 0.123 0.877 22 C -0.199 4.199 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.110 4.110 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.266 0.734 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.937 -13.186 -11.888 21.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.227 5.227 3 C -0.094 4.094 4 C 0.293 3.707 5 O -0.443 6.443 6 N -0.329 5.329 7 C 0.102 3.898 8 C -0.571 4.571 9 H 0.047 0.953 10 C -0.188 4.188 11 N -0.590 5.590 12 Si 0.767 3.233 13 H -0.177 1.177 14 H -0.216 1.216 15 H -0.171 1.171 16 C -0.014 4.014 17 C -0.080 4.080 18 C -0.073 4.073 19 N -0.165 5.165 20 C -0.095 4.095 21 H 0.140 0.860 22 C -0.238 4.238 23 C -0.120 4.120 24 C -0.168 4.168 25 C -0.168 4.168 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.433 -12.762 -12.092 22.125 hybrid contribution -1.054 0.701 0.571 1.389 sum 12.379 -12.061 -11.521 20.771 Atomic orbital electron populations 1.22369 0.86552 1.02690 1.00048 1.61257 1.08314 1.11774 1.41324 1.22378 1.03997 0.89967 0.93084 1.21078 0.77954 0.81180 0.90507 1.90653 1.42708 1.62796 1.48161 1.47850 1.58007 1.12803 1.14228 1.19375 0.95088 0.93200 0.82151 1.21615 1.03694 1.32795 0.98947 0.95343 1.25843 0.96346 0.94409 1.02219 1.70063 1.21735 1.36826 1.30406 0.85764 0.79145 0.80328 0.78063 1.17670 1.21648 1.17084 1.21534 0.90075 0.98457 0.91346 1.19865 0.93309 1.00474 0.94343 1.29122 0.92461 0.92500 0.93252 1.81272 1.11117 1.11376 1.12685 1.22913 0.92731 1.01056 0.92802 0.85976 1.23984 1.03944 0.98064 0.97796 1.21851 0.95370 0.96630 0.98115 1.21320 0.98924 1.00790 0.95787 1.21342 1.01874 0.93389 1.00158 0.94628 0.90272 0.93437 0.90755 0.84937 0.95660 0.92441 0.92554 0.89541 0.88440 0.84901 0.85065 0.87298 0.87913 0.93459 0.91333 0.92539 0.91629 0.91342 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.14 127.69 1.17 2.04 16 2 N -0.51 -13.15 4.14 -901.62 -3.73 -16.88 16 3 C 0.04 0.89 2.59 85.56 0.22 1.11 16 4 C 0.50 17.94 7.37 87.66 0.65 18.59 16 5 O -0.57 -26.14 14.41 -3.02 -0.04 -26.18 16 6 N -0.60 -20.37 2.46 -826.14 -2.03 -22.39 16 7 C 0.22 9.67 4.23 85.63 0.36 10.03 16 8 C -0.53 -29.38 9.94 25.60 0.25 -29.12 16 9 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 10 C 0.01 0.53 5.47 84.66 0.46 0.99 16 11 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 12 Si 0.94 42.33 27.47 68.60 1.88 44.21 16 13 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 16 C 0.11 2.58 5.17 86.38 0.45 3.02 16 17 C -0.04 -0.61 6.03 28.79 0.17 -0.44 16 18 C 0.24 4.83 15.43 89.44 1.38 6.21 16 19 N -0.49 -12.69 18.54 20.01 0.37 -12.32 16 20 C 0.01 0.26 5.82 44.92 0.26 0.52 16 21 H 0.12 2.11 7.95 -2.39 -0.02 2.09 16 22 C -0.20 -2.97 8.92 30.62 0.27 -2.69 16 23 C -0.12 -1.94 2.70 -52.16 -0.14 -2.08 16 24 C -0.11 -1.99 8.90 71.98 0.64 -1.35 16 25 C -0.11 -1.42 9.84 71.98 0.71 -0.72 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.72 6.35 -2.38 -0.02 1.71 16 29 H 0.07 1.70 7.31 -2.38 -0.02 1.68 16 30 H 0.13 2.47 2.61 -2.39 -0.01 2.47 16 31 H 0.03 1.20 6.48 -2.39 -0.02 1.19 16 32 H 0.06 2.15 7.50 -2.38 -0.02 2.13 16 33 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.09 2.24 8.07 -2.39 -0.02 2.22 16 35 H 0.10 1.86 6.44 -2.39 -0.02 1.84 16 36 H 0.13 1.44 7.22 -2.39 -0.02 1.42 16 37 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 1.32 8.05 -2.39 -0.02 1.30 16 39 H 0.10 1.45 5.68 -2.39 -0.01 1.44 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.00 7.84 -2.38 -0.02 0.99 16 42 H 0.06 0.93 5.83 -2.39 -0.01 0.92 16 43 H 0.06 0.71 7.90 -2.39 -0.02 0.69 16 44 H 0.07 0.78 7.87 -2.39 -0.02 0.76 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -76.75 363.45 4.54 -72.21 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.93 Total: 13.71 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.86 Total: 6.12 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -5.09 Total: -110.09 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.04 Total: -26.18 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.21 kcal Total: -76.75 4.54 -72.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489415266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.603 kcal (2) G-P(sol) polarization free energy of solvation -76.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds