Wall clock time and date at job start Tue Mar 31 2020 07:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48505 * 109.47087 * 239.99854 * 3 2 1 5 5 H 1.48497 * 109.47442 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46765 * 120.00431 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99954 * 173.55554 * 7 2 1 9 9 C 1.50698 * 120.00018 * 353.55794 * 7 2 1 10 10 C 1.52999 * 115.54799 * 85.40564 * 9 7 2 11 11 N 1.46500 * 109.47336 * 65.14418 * 10 9 7 12 12 C 1.34778 * 119.99948 * 178.28759 * 11 10 9 13 13 O 1.21587 * 120.00015 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99771 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00058 * 179.71934 * 14 12 11 16 16 C 1.52995 * 109.47446 * 180.27330 * 15 14 12 17 17 N 1.46900 * 109.47215 * 180.02562 * 16 15 14 18 18 C 1.46839 * 111.00155 * 292.93401 * 17 16 15 19 19 C 1.50140 * 110.27094 * 287.55571 * 18 17 16 20 20 C 1.29824 * 123.28233 * 342.90588 * 19 18 17 21 21 C 1.50305 * 122.89545 * 0.42162 * 20 19 18 22 22 C 1.47240 * 111.00021 * 170.00012 * 17 16 15 23 23 C 1.52993 * 117.49725 * 231.07361 * 9 7 2 24 24 C 1.52999 * 117.49870 * 299.73366 * 9 7 2 25 25 H 0.97000 * 120.00568 * 5.06692 * 1 2 3 26 26 H 1.08997 * 109.47175 * 305.13569 * 10 9 7 27 27 H 1.09007 * 109.46774 * 185.14098 * 10 9 7 28 28 H 0.96997 * 119.99971 * 358.28291 * 11 10 9 29 29 H 0.96998 * 120.00723 * 359.97438 * 14 12 11 30 30 H 1.08997 * 109.47142 * 300.27842 * 15 14 12 31 31 H 1.09002 * 109.46471 * 60.27253 * 15 14 12 32 32 H 1.08997 * 109.47369 * 300.00374 * 16 15 14 33 33 H 1.09004 * 109.46863 * 60.00257 * 16 15 14 34 34 H 1.09002 * 109.33495 * 47.78146 * 18 17 16 35 35 H 1.08999 * 109.33874 * 167.29075 * 18 17 16 36 36 H 1.07999 * 118.35828 * 162.91265 * 19 18 17 37 37 H 1.08005 * 118.55466 * 180.39860 * 20 19 18 38 38 H 1.08997 * 109.43344 * 223.40230 * 21 20 19 39 39 H 1.08998 * 109.42973 * 103.55223 * 21 20 19 40 40 H 1.08998 * 109.63528 * 174.27942 * 22 17 16 41 41 H 1.08996 * 109.64135 * 294.68855 * 22 17 16 42 42 H 1.09002 * 117.50194 * 215.00516 * 23 9 7 43 43 H 1.09001 * 117.50080 * 0.02562 * 23 9 7 44 44 H 1.09005 * 117.49780 * 359.97438 * 24 9 7 45 45 H 1.08999 * 117.50006 * 144.97554 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2582 -2.4951 0.1453 10 6 0.7023 -3.0859 -1.1519 11 7 1.8114 -3.4582 -2.0337 12 6 1.5602 -4.0343 -3.2260 13 8 0.4132 -4.2454 -3.5695 14 7 2.5805 -4.3763 -4.0373 15 6 2.3078 -5.0082 -5.3307 16 6 3.6291 -5.2979 -6.0455 17 7 3.3556 -5.9308 -7.3427 18 6 2.7788 -7.2693 -7.1639 19 6 3.8283 -8.2275 -6.6795 20 6 5.1021 -7.9907 -6.7627 21 6 5.6603 -6.7233 -7.3467 22 6 4.5778 -6.0087 -8.1600 23 6 1.7471 -3.4738 1.2148 24 6 0.4418 -2.7018 1.4226 25 1 -0.4851 0.8367 -0.0742 26 1 0.0755 -2.3455 -1.6490 27 1 0.1077 -3.9703 -0.9228 28 1 2.7264 -3.2900 -1.7594 29 1 3.4956 -4.2076 -3.7635 30 1 1.7680 -5.9418 -5.1724 31 1 1.7032 -4.3381 -5.9420 32 1 4.1689 -4.3643 -6.2039 33 1 4.2336 -5.9679 -5.4342 34 1 1.9712 -7.2197 -6.4335 35 1 2.3804 -7.6208 -8.1156 36 1 3.5076 -9.1605 -6.2401 37 1 5.7910 -8.7372 -6.3958 38 1 6.5024 -6.9632 -7.9959 39 1 5.9986 -6.0712 -6.5414 40 1 4.3737 -6.5705 -9.0715 41 1 4.9118 -5.0034 -8.4164 42 1 1.6727 -4.5387 0.9943 43 1 2.6083 -3.1766 1.8132 44 1 0.4448 -1.8969 2.1577 45 1 -0.4916 -3.2584 1.3388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559341633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:42 Heat of formation + Delta-G solvation = 16.184768 kcal Electronic energy + Delta-G solvation = -23336.024010 eV Core-core repulsion = 19968.551146 eV Total energy + Delta-G solvation = -3367.472864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05135 -39.18579 -36.77149 -34.88102 -33.23264 -32.74306 -31.94848 -31.26321 -29.01894 -26.18593 -25.22829 -24.41901 -23.27944 -21.84760 -21.18683 -20.25733 -19.35592 -18.14909 -17.33013 -16.88468 -16.35395 -15.90956 -15.52215 -15.06702 -14.78937 -14.57533 -14.37809 -13.96969 -13.81635 -13.61995 -13.18692 -12.97140 -12.77209 -12.60939 -12.35366 -11.98452 -11.79200 -11.57430 -11.55923 -11.11458 -10.98476 -10.97345 -10.89366 -10.53543 -10.25230 -9.71360 -9.49074 -9.37289 -8.95466 -8.77343 -8.59746 -8.47649 -8.23072 -7.92751 -6.05660 -4.14455 1.88610 3.09638 3.27865 3.34138 3.34949 3.82306 3.86549 4.36572 4.46501 4.60166 4.65819 4.81362 4.85678 4.92050 5.03720 5.17335 5.22353 5.25510 5.38689 5.41037 5.42403 5.52153 5.53988 5.67374 5.91009 6.01557 6.06745 6.18742 6.36676 6.48744 6.49920 6.62725 6.70455 6.71330 6.73190 6.87335 6.89235 7.10958 7.37032 7.44027 7.50166 7.63548 7.82981 8.36189 8.70598 8.85993 9.25545 9.52092 11.02171 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.002956 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.339997 B = 9468.770804 C = 9949.031031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.603 6.603 14 N -0.754 5.754 15 C 0.145 3.855 16 C 0.040 3.960 17 N -0.523 5.523 18 C 0.070 3.930 19 C -0.185 4.185 20 C -0.158 4.158 21 C -0.131 4.131 22 C 0.052 3.948 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.262 0.738 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.395 0.605 29 H 0.392 0.608 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 -13.430 -13.262 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.373 5.373 12 C 0.399 3.601 13 O -0.482 6.482 14 N -0.412 5.412 15 C 0.020 3.980 16 C -0.089 4.089 17 N -0.245 5.245 18 C -0.057 4.057 19 C -0.205 4.205 20 C -0.177 4.177 21 C -0.169 4.169 22 C -0.076 4.076 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.229 0.771 29 H 0.225 0.775 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.138 -13.163 -13.753 21.117 hybrid contribution 1.964 0.456 0.778 2.161 sum 11.102 -12.708 -12.975 21.286 Atomic orbital electron populations 1.69960 1.05884 1.27045 1.48077 1.24983 0.94798 0.98914 0.94311 0.86693 0.79654 0.83245 0.78570 1.20279 1.21279 1.20244 1.20291 0.92749 0.88655 1.52200 0.92315 1.19030 0.98551 0.93842 0.85763 1.20841 0.86636 0.96634 0.90013 1.45133 1.11266 1.63729 1.17150 1.15994 0.84507 0.78882 0.80761 1.90873 1.19851 1.61855 1.75635 1.44979 1.08452 1.67951 1.19789 1.20978 0.95971 0.97961 0.83068 1.22300 0.97073 0.99530 0.89985 1.62582 1.27392 1.19202 1.15361 1.21260 0.96108 0.86250 1.02129 1.22916 0.95721 1.01012 1.00834 1.22138 0.96225 0.98337 1.00972 1.21117 0.99569 0.95702 1.00508 1.22283 0.88157 1.00956 0.96169 1.23017 0.98640 0.95680 1.07499 1.22491 0.92284 1.01070 1.02742 0.92769 0.91215 0.94777 0.77150 0.77511 0.92072 0.91054 0.90129 0.93494 0.89023 0.89258 0.87414 0.87797 0.90494 0.90506 0.90308 0.89991 0.91674 0.90435 0.89834 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.43 12.91 55.43 0.72 -23.71 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 3 Si 0.89 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.50 -12.93 8.63 -34.44 -0.30 -13.23 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.03 0.68 1.38 -155.67 -0.21 0.47 16 10 C 0.18 4.24 5.50 -4.04 -0.02 4.22 16 11 N -0.72 -14.35 5.48 -65.23 -0.36 -14.71 16 12 C 0.70 13.74 8.57 -86.92 -0.74 12.99 16 13 O -0.60 -14.31 16.34 5.29 0.09 -14.22 16 14 N -0.75 -10.96 5.56 -65.22 -0.36 -11.33 16 15 C 0.15 1.89 5.65 -4.04 -0.02 1.87 16 16 C 0.04 0.39 4.14 -3.83 -0.02 0.37 16 17 N -0.52 -4.89 5.02 -236.12 -1.19 -6.08 16 18 C 0.07 0.62 5.83 -5.28 -0.03 0.59 16 19 C -0.19 -1.54 9.37 -35.97 -0.34 -1.88 16 20 C -0.16 -1.25 9.29 -35.89 -0.33 -1.59 16 21 C -0.13 -0.91 5.54 -28.03 -0.16 -1.07 16 22 C 0.05 0.39 6.02 -3.59 -0.02 0.37 16 23 C -0.21 -4.41 9.96 -26.70 -0.27 -4.67 16 24 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 25 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 26 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 27 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.40 7.09 8.38 -40.82 -0.34 6.75 16 29 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 30 H 0.06 0.84 6.37 -51.93 -0.33 0.51 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.74 8.08 -51.93 -0.42 0.33 16 33 H 0.05 0.45 6.04 -51.93 -0.31 0.14 16 34 H 0.09 0.87 6.06 -51.93 -0.31 0.55 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.10 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.55 7.16 -51.93 -0.37 0.18 16 40 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -30.67 363.14 -10.94 -41.61 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.47 Total: 10.69 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.81 Total: -3.32 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.19 Total: -55.82 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.67 -10.94 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559341633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.793 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds