Wall clock time and date at job start Tue Mar 31 2020 07:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48505 * 109.47087 * 239.99854 * 3 2 1 5 5 H 1.48497 * 109.47442 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46765 * 120.00431 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99954 * 173.55554 * 7 2 1 9 9 C 1.50698 * 120.00018 * 353.55794 * 7 2 1 10 10 C 1.52999 * 115.54799 * 85.40564 * 9 7 2 11 11 N 1.46500 * 109.47336 * 65.14418 * 10 9 7 12 12 C 1.34778 * 119.99948 * 178.28759 * 11 10 9 13 13 O 1.21587 * 120.00015 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99771 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00058 * 179.71934 * 14 12 11 16 16 C 1.52995 * 109.47446 * 180.27330 * 15 14 12 17 17 N 1.46900 * 109.47215 * 180.02562 * 16 15 14 18 18 C 1.46839 * 111.00155 * 292.93401 * 17 16 15 19 19 C 1.50140 * 110.27094 * 287.55571 * 18 17 16 20 20 C 1.29824 * 123.28233 * 342.90588 * 19 18 17 21 21 C 1.50305 * 122.89545 * 0.42162 * 20 19 18 22 22 C 1.47240 * 111.00021 * 170.00012 * 17 16 15 23 23 C 1.52993 * 117.49725 * 231.07361 * 9 7 2 24 24 C 1.52999 * 117.49870 * 299.73366 * 9 7 2 25 25 H 0.97000 * 120.00568 * 5.06692 * 1 2 3 26 26 H 1.08997 * 109.47175 * 305.13569 * 10 9 7 27 27 H 1.09007 * 109.46774 * 185.14098 * 10 9 7 28 28 H 0.96997 * 119.99971 * 358.28291 * 11 10 9 29 29 H 0.96998 * 120.00723 * 359.97438 * 14 12 11 30 30 H 1.08997 * 109.47142 * 300.27842 * 15 14 12 31 31 H 1.09002 * 109.46471 * 60.27253 * 15 14 12 32 32 H 1.08997 * 109.47369 * 300.00374 * 16 15 14 33 33 H 1.09004 * 109.46863 * 60.00257 * 16 15 14 34 34 H 1.09002 * 109.33495 * 47.78146 * 18 17 16 35 35 H 1.08999 * 109.33874 * 167.29075 * 18 17 16 36 36 H 1.07999 * 118.35828 * 162.91265 * 19 18 17 37 37 H 1.08005 * 118.55466 * 180.39860 * 20 19 18 38 38 H 1.08997 * 109.43344 * 223.40230 * 21 20 19 39 39 H 1.08998 * 109.42973 * 103.55223 * 21 20 19 40 40 H 1.08998 * 109.63528 * 174.27942 * 22 17 16 41 41 H 1.08996 * 109.64135 * 294.68855 * 22 17 16 42 42 H 1.09002 * 117.50194 * 215.00516 * 23 9 7 43 43 H 1.09001 * 117.50080 * 0.02562 * 23 9 7 44 44 H 1.09005 * 117.49780 * 359.97438 * 24 9 7 45 45 H 1.08999 * 117.50006 * 144.97554 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2582 -2.4951 0.1453 10 6 0.7023 -3.0859 -1.1519 11 7 1.8114 -3.4582 -2.0337 12 6 1.5602 -4.0343 -3.2260 13 8 0.4132 -4.2454 -3.5695 14 7 2.5805 -4.3763 -4.0373 15 6 2.3078 -5.0082 -5.3307 16 6 3.6291 -5.2979 -6.0455 17 7 3.3556 -5.9308 -7.3427 18 6 2.7788 -7.2693 -7.1639 19 6 3.8283 -8.2275 -6.6795 20 6 5.1021 -7.9907 -6.7627 21 6 5.6603 -6.7233 -7.3467 22 6 4.5778 -6.0087 -8.1600 23 6 1.7471 -3.4738 1.2148 24 6 0.4418 -2.7018 1.4226 25 1 -0.4851 0.8367 -0.0742 26 1 0.0755 -2.3455 -1.6490 27 1 0.1077 -3.9703 -0.9228 28 1 2.7264 -3.2900 -1.7594 29 1 3.4956 -4.2076 -3.7635 30 1 1.7680 -5.9418 -5.1724 31 1 1.7032 -4.3381 -5.9420 32 1 4.1689 -4.3643 -6.2039 33 1 4.2336 -5.9679 -5.4342 34 1 1.9712 -7.2197 -6.4335 35 1 2.3804 -7.6208 -8.1156 36 1 3.5076 -9.1605 -6.2401 37 1 5.7910 -8.7372 -6.3958 38 1 6.5024 -6.9632 -7.9959 39 1 5.9986 -6.0712 -6.5414 40 1 4.3737 -6.5705 -9.0715 41 1 4.9118 -5.0034 -8.4164 42 1 1.6727 -4.5387 0.9943 43 1 2.6083 -3.1766 1.8132 44 1 0.4448 -1.8969 2.1577 45 1 -0.4916 -3.2584 1.3388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559341633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:41 Heat of formation + Delta-G solvation = -5.052667 kcal Electronic energy + Delta-G solvation = -23336.944934 eV Core-core repulsion = 19968.551146 eV Total energy + Delta-G solvation = -3368.393788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.07370 -40.43009 -38.55067 -36.10697 -34.93286 -33.95776 -33.59064 -31.87252 -30.06599 -27.93092 -26.96322 -25.35973 -24.00912 -22.96060 -22.66780 -21.79193 -21.21601 -19.39391 -18.40121 -18.00328 -17.61022 -17.11121 -16.78405 -16.60201 -16.17444 -15.82761 -15.56923 -15.36513 -15.07132 -14.60378 -14.56869 -14.39350 -13.91041 -13.55337 -13.45179 -13.37827 -13.02643 -12.91059 -12.77458 -12.73880 -12.39296 -12.36350 -12.02633 -11.93161 -11.60852 -11.50501 -11.28253 -10.84436 -10.44066 -10.28424 -10.03294 -9.95682 -9.56333 -9.27883 -8.07376 -6.20830 1.28209 1.45110 1.46401 1.53027 1.77644 2.25880 2.44413 2.97524 3.20669 3.42590 3.67517 3.79209 3.95654 4.00374 4.15455 4.16959 4.26834 4.27805 4.43692 4.58320 4.63365 4.67726 4.73006 4.75432 4.76683 4.81634 4.94037 4.98495 5.01483 5.03634 5.07463 5.11966 5.29083 5.50510 5.60564 5.60984 5.63490 5.73124 5.80643 5.88670 6.03748 6.10466 6.17141 6.38924 6.86045 7.25601 7.48566 7.69944 9.00021 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.002956 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.339997 B = 9468.770804 C = 9949.031031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.505 4.505 8 H 0.065 0.935 9 C 0.007 3.993 10 C 0.200 3.800 11 N -0.714 5.714 12 C 0.696 3.304 13 O -0.647 6.647 14 N -0.732 5.732 15 C 0.148 3.852 16 C 0.054 3.946 17 N -0.536 5.536 18 C 0.070 3.930 19 C -0.197 4.197 20 C -0.159 4.159 21 C -0.129 4.129 22 C 0.052 3.948 23 C -0.175 4.175 24 C -0.160 4.160 25 H 0.259 0.741 26 H 0.025 0.975 27 H 0.031 0.969 28 H 0.407 0.593 29 H 0.410 0.590 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.512 -14.098 -13.744 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.543 4.543 8 H 0.083 0.917 9 C 0.006 3.994 10 C 0.075 3.925 11 N -0.368 5.368 12 C 0.395 3.605 13 O -0.530 6.530 14 N -0.390 5.390 15 C 0.023 3.977 16 C -0.075 4.075 17 N -0.259 5.259 18 C -0.058 4.058 19 C -0.217 4.217 20 C -0.177 4.177 21 C -0.167 4.167 22 C -0.076 4.076 23 C -0.212 4.212 24 C -0.198 4.198 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.242 0.758 29 H 0.246 0.754 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.952 -13.847 -14.248 23.187 hybrid contribution 1.122 0.603 0.879 1.548 sum 13.074 -13.245 -13.369 22.915 Atomic orbital electron populations 1.70099 1.07332 1.27392 1.49755 1.25721 0.95444 1.02133 0.94380 0.85733 0.78348 0.79362 0.78862 1.19583 1.21880 1.19461 1.20637 0.93159 0.89542 1.50973 0.91696 1.19039 0.99690 0.94463 0.86197 1.20393 0.87029 0.95124 0.89994 1.44891 1.11010 1.63770 1.17081 1.16169 0.84745 0.78632 0.80905 1.90845 1.22080 1.63543 1.76499 1.44774 1.08260 1.66528 1.19393 1.21035 0.97782 0.96815 0.82083 1.22130 0.94898 1.00276 0.90159 1.62564 1.28661 1.19533 1.15107 1.21228 0.96014 0.86344 1.02174 1.22935 0.95881 1.01207 1.01641 1.22342 0.96165 0.98844 1.00340 1.21131 0.99735 0.95160 1.00682 1.22356 0.87494 1.01685 0.96048 1.23002 0.97344 0.96230 1.04670 1.22437 0.93795 1.01432 1.02139 0.93245 0.95674 0.95038 0.75765 0.75389 0.92877 0.92967 0.89024 0.92839 0.90307 0.88649 0.87107 0.87002 0.88973 0.90324 0.89821 0.89185 0.89386 0.89464 0.91745 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.79 12.91 21.45 0.28 -51.52 16 2 C 0.02 1.27 5.39 84.66 0.46 1.73 16 3 Si 0.95 42.13 29.55 68.60 2.03 44.16 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.51 -25.71 8.63 25.60 0.22 -25.49 16 8 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.01 0.32 1.38 -52.93 -0.07 0.25 16 10 C 0.20 9.38 5.50 86.38 0.48 9.85 16 11 N -0.71 -28.00 5.48 -478.54 -2.62 -30.63 16 12 C 0.70 27.17 8.57 179.06 1.53 28.70 16 13 O -0.65 -31.29 16.34 -3.99 -0.07 -31.35 16 14 N -0.73 -20.37 5.56 -478.53 -2.66 -23.03 16 15 C 0.15 3.74 5.65 86.38 0.49 4.22 16 16 C 0.05 0.96 4.14 86.30 0.36 1.31 16 17 N -0.54 -9.22 5.02 -900.94 -4.53 -13.74 16 18 C 0.07 1.17 5.83 85.39 0.50 1.67 16 19 C -0.20 -2.99 9.37 26.68 0.25 -2.74 16 20 C -0.16 -2.15 9.29 26.73 0.25 -1.90 16 21 C -0.13 -1.45 5.54 29.75 0.16 -1.29 16 22 C 0.05 0.66 6.02 86.27 0.52 1.18 16 23 C -0.18 -6.94 9.96 30.62 0.30 -6.63 16 24 C -0.16 -7.31 9.42 30.62 0.29 -7.02 16 25 H 0.26 14.30 8.32 -92.71 -0.77 13.53 16 26 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.03 1.47 8.09 -2.38 -0.02 1.45 16 28 H 0.41 13.92 8.38 -92.71 -0.78 13.14 16 29 H 0.41 8.60 8.49 -92.71 -0.79 7.81 16 30 H 0.05 1.46 6.37 -2.39 -0.02 1.44 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 33 H 0.05 0.90 6.04 -2.39 -0.01 0.89 16 34 H 0.08 1.49 6.06 -2.39 -0.01 1.48 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.89 7.16 -2.39 -0.02 0.87 16 40 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 41 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 45 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -66.38 363.14 -2.42 -68.79 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.58 Total: 33.48 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.73 Total: 3.84 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -9.53 Total: -118.92 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.07 Total: -31.35 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -66.38 -2.42 -68.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559341633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.740 kcal (2) G-P(sol) polarization free energy of solvation -66.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds