Wall clock time and date at job start Tue Mar 31 2020 07:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48495 * 109.47215 * 273.03560 * 3 2 1 5 5 H 1.48505 * 109.46867 * 33.03430 * 3 2 1 6 6 H 1.48504 * 109.47127 * 153.02968 * 3 2 1 7 7 C 1.37881 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99397 * 1.63976 * 7 2 1 9 9 C 1.50695 * 120.00194 * 181.64012 * 7 2 1 10 10 C 1.53004 * 115.54675 * 90.74953 * 9 7 2 11 11 N 1.46502 * 109.47174 * 65.23895 * 10 9 7 12 12 C 1.34772 * 120.00126 * 175.21615 * 11 10 9 13 13 O 1.21586 * 120.00008 * 4.62795 * 12 11 10 14 14 N 1.34777 * 120.00344 * 184.63173 * 12 11 10 15 15 C 1.46494 * 120.00236 * 184.54870 * 14 12 11 16 16 H 1.09000 * 110.62976 * 31.89555 * 15 14 12 17 17 C 1.55144 * 110.70657 * 268.59430 * 15 14 12 18 18 C 1.54909 * 101.65503 * 205.96367 * 17 15 14 19 19 N 1.47848 * 104.79410 * 37.07091 * 18 17 15 20 20 C 1.46897 * 110.99791 * 213.63397 * 19 18 17 21 21 C 1.53001 * 117.49473 * 177.77172 * 20 19 18 22 22 C 1.53002 * 117.49738 * 246.39233 * 20 19 18 23 23 C 1.47440 * 108.56934 * 335.90350 * 19 18 17 24 24 C 1.52994 * 117.50008 * 236.41989 * 9 7 2 25 25 C 1.52990 * 117.50107 * 305.08042 * 9 7 2 26 26 H 0.97000 * 119.99839 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47633 * 305.23100 * 10 9 7 28 28 H 1.09005 * 109.47107 * 185.23482 * 10 9 7 29 29 H 0.97000 * 119.99841 * 355.20964 * 11 10 9 30 30 H 0.97004 * 119.99447 * 4.54472 * 14 12 11 31 31 H 1.08991 * 110.99127 * 324.05887 * 17 15 14 32 32 H 1.09007 * 110.98652 * 87.87056 * 17 15 14 33 33 H 1.08998 * 110.37436 * 278.24223 * 18 17 15 34 34 H 1.08993 * 110.37133 * 155.89960 * 18 17 15 35 35 H 1.09002 * 115.56164 * 32.08417 * 20 19 18 36 36 H 1.08996 * 117.50401 * 0.02562 * 21 20 19 37 37 H 1.09009 * 117.49318 * 214.97969 * 21 20 19 38 38 H 1.08998 * 117.49757 * 145.02771 * 22 20 19 39 39 H 1.08998 * 117.50012 * 0.02562 * 22 20 19 40 40 H 1.08994 * 109.89052 * 120.39280 * 23 19 18 41 41 H 1.08997 * 109.89005 * 241.58255 * 23 19 18 42 42 H 1.09004 * 117.50102 * 215.00515 * 24 9 7 43 43 H 1.09003 * 117.50221 * 0.02562 * 24 9 7 44 44 H 1.09004 * 117.49763 * 359.97438 * 25 9 7 45 45 H 1.09007 * 117.50101 * 144.96986 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4326 2.0835 -1.3980 5 1 1.4802 2.6333 0.7633 6 1 3.5774 1.4224 0.6350 7 6 2.0046 -1.1941 -0.0005 8 1 1.4648 -2.1291 -0.0277 9 6 3.5111 -1.1944 0.0368 10 6 4.1365 -1.2329 1.4327 11 7 3.8088 -2.5058 2.0796 12 6 4.3349 -2.8049 3.2838 13 8 5.0134 -1.9847 3.8714 14 7 4.1091 -4.0130 3.8368 15 6 4.5964 -4.3031 5.1875 16 1 4.5942 -3.4005 5.7986 17 6 6.0138 -4.9319 5.1361 18 6 6.0437 -5.7444 6.4546 19 7 4.6727 -6.2786 6.6001 20 6 4.2860 -6.3577 8.0150 21 6 2.8707 -6.8435 8.3344 22 6 4.0716 -7.7500 8.6120 23 6 3.7484 -5.4109 5.8474 24 6 4.2455 -1.9283 -1.0869 25 6 4.2447 -0.3983 -1.0442 26 1 -0.4850 0.8401 0.0004 27 1 3.7436 -0.4101 2.0298 28 1 5.2190 -1.1363 1.3486 29 1 3.2130 -3.1334 1.6413 30 1 3.6239 -4.6905 3.3403 31 1 6.1192 -5.5869 4.2714 32 1 6.7835 -4.1601 5.1355 33 1 6.2891 -5.0951 7.2950 34 1 6.7629 -6.5601 6.3815 35 1 4.7137 -5.5926 8.6630 36 1 2.2268 -7.1048 7.4947 37 1 2.3674 -6.3980 9.1926 38 1 4.3582 -7.9010 9.6527 39 1 4.2179 -8.6073 7.9549 40 1 3.2360 -5.9918 5.0806 41 1 3.0212 -4.9661 6.5267 42 1 5.1742 -2.4388 -0.8318 43 1 3.6390 -2.4107 -1.8535 44 1 3.6377 0.1254 -1.7828 45 1 5.1728 0.0984 -0.7610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562381719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:48 Heat of formation + Delta-G solvation = 31.500878 kcal Electronic energy + Delta-G solvation = -23489.037588 eV Core-core repulsion = 20122.228881 eV Total energy + Delta-G solvation = -3366.808707 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.07405 -38.99563 -37.21096 -36.27867 -33.62877 -33.28287 -32.12724 -29.65911 -28.62842 -26.39417 -25.03839 -22.74512 -22.51648 -21.81360 -21.33230 -20.40523 -20.31014 -19.31697 -17.85296 -16.98432 -16.48400 -16.16520 -15.39052 -15.15240 -14.86174 -14.54999 -14.27307 -14.00713 -13.69472 -13.32560 -13.10064 -12.78291 -12.72833 -12.52047 -12.29200 -12.15195 -11.80743 -11.74429 -11.56966 -11.17004 -10.98812 -10.88278 -10.66795 -10.47766 -10.41242 -10.17573 -9.82920 -9.56035 -9.17475 -8.93874 -8.66418 -8.61090 -8.57758 -8.17364 -6.16792 -4.21501 3.00735 3.27853 3.39054 3.44983 3.48054 3.60628 3.64096 4.39543 4.40126 4.53557 4.63323 4.65653 4.74332 4.88582 5.01183 5.06912 5.10224 5.13730 5.22188 5.32100 5.38741 5.51941 5.65952 5.67694 5.67947 5.79279 5.89748 5.92683 6.01639 6.03675 6.06171 6.27500 6.41503 6.48639 6.61378 6.69163 6.72900 6.83097 6.98744 7.07690 7.17775 7.40947 7.67361 8.39754 8.53174 8.82814 9.06887 9.46385 10.94482 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.003052 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.143166 B = 9171.118718 C = 9631.959537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.079 3.921 3 Si 0.881 3.119 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.256 1.256 7 C -0.491 4.491 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.177 3.823 11 N -0.719 5.719 12 C 0.701 3.299 13 O -0.604 6.604 14 N -0.742 5.742 15 C 0.148 3.852 16 H 0.094 0.906 17 C -0.142 4.142 18 C 0.047 3.953 19 N -0.499 5.499 20 C -0.003 4.003 21 C -0.176 4.176 22 C -0.163 4.163 23 C 0.037 3.963 24 C -0.179 4.179 25 C -0.193 4.193 26 H 0.265 0.735 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.401 0.599 30 H 0.396 0.604 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.068 -13.441 12.847 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.124 4.124 3 Si 0.709 3.291 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.528 4.528 8 H 0.096 0.904 9 C -0.016 4.016 10 C 0.053 3.947 11 N -0.372 5.372 12 C 0.401 3.599 13 O -0.484 6.484 14 N -0.398 5.398 15 C 0.041 3.959 16 H 0.112 0.888 17 C -0.181 4.181 18 C -0.081 4.081 19 N -0.223 5.223 20 C -0.112 4.112 21 C -0.213 4.213 22 C -0.200 4.200 23 C -0.091 4.091 24 C -0.216 4.216 25 C -0.230 4.230 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.235 0.765 30 H 0.231 0.769 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.483 -13.031 13.166 20.810 hybrid contribution -0.168 1.197 -0.174 1.222 sum 9.314 -11.833 12.992 19.889 Atomic orbital electron populations 1.69888 1.06399 1.27267 1.49660 1.24992 0.94615 0.99208 0.93595 0.86822 0.80841 0.83209 0.78197 1.20600 1.22203 1.17977 1.20182 0.86141 0.94511 1.51993 0.90406 1.19631 0.95070 1.00639 0.86233 1.20942 0.96675 0.83890 0.93175 1.45013 1.50913 1.22356 1.18928 1.16007 0.80418 0.81941 0.81562 1.90864 1.45008 1.49049 1.63454 1.45012 1.62817 1.14718 1.17252 1.21895 0.92630 0.97954 0.83443 0.88789 1.23165 0.97941 0.99363 0.97648 1.23023 0.90227 0.97728 0.97094 1.63400 1.02316 1.48582 1.07995 1.22707 1.00173 0.98232 0.90073 1.23072 0.90789 1.04042 1.03432 1.23044 1.01718 0.94209 1.01068 1.23071 0.95173 0.92874 0.98001 1.22871 1.01200 0.93659 1.03913 1.22933 1.01536 0.94232 1.04344 0.92489 0.92257 0.93895 0.76482 0.76944 0.90280 0.90138 0.93153 0.89925 0.89102 0.88217 0.88667 0.88894 0.88170 0.89859 0.91478 0.90922 0.89439 0.89234 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.44 24.74 -169.99 -4.21 17.23 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -5.97 6.00 56.52 0.34 -5.63 16 7 C -0.49 -12.84 9.22 -34.44 -0.32 -13.16 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 C -0.01 -0.32 0.85 -155.67 -0.13 -0.45 16 10 C 0.18 3.76 5.24 -4.04 -0.02 3.74 16 11 N -0.72 -13.40 5.48 -65.22 -0.36 -13.75 16 12 C 0.70 12.75 8.55 -86.92 -0.74 12.00 16 13 O -0.60 -13.19 16.04 5.29 0.08 -13.10 16 14 N -0.74 -10.06 5.18 -56.89 -0.29 -10.35 16 15 C 0.15 1.80 3.28 -66.10 -0.22 1.59 16 16 H 0.09 1.34 7.62 -51.93 -0.40 0.94 16 17 C -0.14 -1.55 6.76 -24.59 -0.17 -1.71 16 18 C 0.05 0.44 6.73 -2.30 -0.02 0.42 16 19 N -0.50 -4.84 5.33 -223.29 -1.19 -6.03 16 20 C 0.00 -0.02 5.10 -67.71 -0.35 -0.37 16 21 C -0.18 -1.36 9.50 -26.73 -0.25 -1.61 16 22 C -0.16 -1.22 10.46 -26.73 -0.28 -1.49 16 23 C 0.04 0.37 6.23 -2.83 -0.02 0.36 16 24 C -0.18 -3.43 9.96 -26.70 -0.27 -3.69 16 25 C -0.19 -3.96 7.19 -26.70 -0.19 -4.15 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.06 1.40 7.57 -51.93 -0.39 1.00 16 28 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 29 H 0.40 6.91 8.36 -40.82 -0.34 6.57 16 30 H 0.40 4.41 8.39 -40.82 -0.34 4.07 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.45 7.54 -51.93 -0.39 0.06 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.76 7.70 -51.93 -0.40 0.36 16 36 H 0.10 0.81 8.04 -51.93 -0.42 0.40 16 37 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.80 7.72 -51.93 -0.40 0.40 16 41 H 0.07 0.68 7.13 -51.93 -0.37 0.31 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.09 1.93 6.67 -51.93 -0.35 1.58 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -30.94 359.97 -10.48 -41.41 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -7.64 Total: 11.29 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.07 Total: -6.45 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -1.07 Total: -55.80 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.21 Total: 17.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.94 -10.48 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562381719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.915 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds