Wall clock time and date at job start Tue Mar 31 2020 07:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48495 * 109.47215 * 273.03560 * 3 2 1 5 5 H 1.48505 * 109.46867 * 33.03430 * 3 2 1 6 6 H 1.48504 * 109.47127 * 153.02968 * 3 2 1 7 7 C 1.37881 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99397 * 1.63976 * 7 2 1 9 9 C 1.50695 * 120.00194 * 181.64012 * 7 2 1 10 10 C 1.53004 * 115.54675 * 90.74953 * 9 7 2 11 11 N 1.46502 * 109.47174 * 65.23895 * 10 9 7 12 12 C 1.34772 * 120.00126 * 175.21615 * 11 10 9 13 13 O 1.21586 * 120.00008 * 4.62795 * 12 11 10 14 14 N 1.34777 * 120.00344 * 184.63173 * 12 11 10 15 15 C 1.46494 * 120.00236 * 184.54870 * 14 12 11 16 16 H 1.09000 * 110.62976 * 31.89555 * 15 14 12 17 17 C 1.55144 * 110.70657 * 268.59430 * 15 14 12 18 18 C 1.54909 * 101.65503 * 205.96367 * 17 15 14 19 19 N 1.47848 * 104.79410 * 37.07091 * 18 17 15 20 20 C 1.46897 * 110.99791 * 213.63397 * 19 18 17 21 21 C 1.53001 * 117.49473 * 177.77172 * 20 19 18 22 22 C 1.53002 * 117.49738 * 246.39233 * 20 19 18 23 23 C 1.47440 * 108.56934 * 335.90350 * 19 18 17 24 24 C 1.52994 * 117.50008 * 236.41989 * 9 7 2 25 25 C 1.52990 * 117.50107 * 305.08042 * 9 7 2 26 26 H 0.97000 * 119.99839 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47633 * 305.23100 * 10 9 7 28 28 H 1.09005 * 109.47107 * 185.23482 * 10 9 7 29 29 H 0.97000 * 119.99841 * 355.20964 * 11 10 9 30 30 H 0.97004 * 119.99447 * 4.54472 * 14 12 11 31 31 H 1.08991 * 110.99127 * 324.05887 * 17 15 14 32 32 H 1.09007 * 110.98652 * 87.87056 * 17 15 14 33 33 H 1.08998 * 110.37436 * 278.24223 * 18 17 15 34 34 H 1.08993 * 110.37133 * 155.89960 * 18 17 15 35 35 H 1.09002 * 115.56164 * 32.08417 * 20 19 18 36 36 H 1.08996 * 117.50401 * 0.02562 * 21 20 19 37 37 H 1.09009 * 117.49318 * 214.97969 * 21 20 19 38 38 H 1.08998 * 117.49757 * 145.02771 * 22 20 19 39 39 H 1.08998 * 117.50012 * 0.02562 * 22 20 19 40 40 H 1.08994 * 109.89052 * 120.39280 * 23 19 18 41 41 H 1.08997 * 109.89005 * 241.58255 * 23 19 18 42 42 H 1.09004 * 117.50102 * 215.00515 * 24 9 7 43 43 H 1.09003 * 117.50221 * 0.02562 * 24 9 7 44 44 H 1.09004 * 117.49763 * 359.97438 * 25 9 7 45 45 H 1.09007 * 117.50101 * 144.96986 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4326 2.0835 -1.3980 5 1 1.4802 2.6333 0.7633 6 1 3.5774 1.4224 0.6350 7 6 2.0046 -1.1941 -0.0005 8 1 1.4648 -2.1291 -0.0277 9 6 3.5111 -1.1944 0.0368 10 6 4.1365 -1.2329 1.4327 11 7 3.8088 -2.5058 2.0796 12 6 4.3349 -2.8049 3.2838 13 8 5.0134 -1.9847 3.8714 14 7 4.1091 -4.0130 3.8368 15 6 4.5964 -4.3031 5.1875 16 1 4.5942 -3.4005 5.7986 17 6 6.0138 -4.9319 5.1361 18 6 6.0437 -5.7444 6.4546 19 7 4.6727 -6.2786 6.6001 20 6 4.2860 -6.3577 8.0150 21 6 2.8707 -6.8435 8.3344 22 6 4.0716 -7.7500 8.6120 23 6 3.7484 -5.4109 5.8474 24 6 4.2455 -1.9283 -1.0869 25 6 4.2447 -0.3983 -1.0442 26 1 -0.4850 0.8401 0.0004 27 1 3.7436 -0.4101 2.0298 28 1 5.2190 -1.1363 1.3486 29 1 3.2130 -3.1334 1.6413 30 1 3.6239 -4.6905 3.3403 31 1 6.1192 -5.5869 4.2714 32 1 6.7835 -4.1601 5.1355 33 1 6.2891 -5.0951 7.2950 34 1 6.7629 -6.5601 6.3815 35 1 4.7137 -5.5926 8.6630 36 1 2.2268 -7.1048 7.4947 37 1 2.3674 -6.3980 9.1926 38 1 4.3582 -7.9010 9.6527 39 1 4.2179 -8.6073 7.9549 40 1 3.2360 -5.9918 5.0806 41 1 3.0212 -4.9661 6.5267 42 1 5.1742 -2.4388 -0.8318 43 1 3.6390 -2.4107 -1.8535 44 1 3.6377 0.1254 -1.7828 45 1 5.1728 0.0984 -0.7610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562381719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:48 Heat of formation + Delta-G solvation = 9.081558 kcal Electronic energy + Delta-G solvation = -23490.009763 eV Core-core repulsion = 20122.228881 eV Total energy + Delta-G solvation = -3367.780882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26406 -40.07556 -38.80270 -37.15566 -35.06486 -34.56453 -34.17873 -30.51808 -29.65591 -28.13192 -26.82212 -23.53883 -23.36542 -23.19311 -22.33033 -21.68644 -21.11723 -21.07752 -19.31532 -18.35605 -17.70622 -17.36033 -16.93997 -16.40654 -16.14998 -15.81134 -15.62823 -15.16472 -14.94963 -14.71109 -14.48537 -14.24449 -14.06579 -13.81150 -13.49686 -13.16194 -13.08469 -12.79370 -12.66550 -12.52246 -12.30448 -12.16697 -11.96381 -11.88502 -11.55373 -11.36638 -11.29372 -11.02467 -10.98453 -10.64876 -10.36457 -10.24901 -9.64881 -9.35776 -8.29702 -6.36031 1.33829 1.40925 1.51696 1.73800 2.18644 2.37228 2.75149 2.93725 3.05948 3.13290 3.49500 3.57357 3.74975 3.98221 4.03126 4.03489 4.12808 4.30524 4.32866 4.33758 4.37518 4.42903 4.55081 4.57491 4.77840 4.80450 4.82666 4.85422 4.86327 4.95075 5.02566 5.09178 5.10402 5.14383 5.30493 5.32923 5.48972 5.56714 5.65048 5.70814 5.83898 6.07981 6.13072 6.28736 6.72407 7.17581 7.34622 7.63644 8.84799 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.003052 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.143166 B = 9171.118718 C = 9631.959537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.268 1.268 5 H -0.305 1.305 6 H -0.239 1.239 7 C -0.479 4.479 8 H 0.047 0.953 9 C -0.038 4.038 10 C 0.187 3.813 11 N -0.718 5.718 12 C 0.700 3.300 13 O -0.642 6.642 14 N -0.724 5.724 15 C 0.144 3.856 16 H 0.071 0.929 17 C -0.135 4.135 18 C 0.052 3.948 19 N -0.501 5.501 20 C -0.018 4.018 21 C -0.175 4.175 22 C -0.153 4.153 23 C 0.046 3.954 24 C -0.151 4.151 25 C -0.193 4.193 26 H 0.264 0.736 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.407 0.593 30 H 0.411 0.589 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 -14.667 13.192 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.174 4.174 3 Si 0.758 3.242 4 H -0.194 1.194 5 H -0.233 1.233 6 H -0.162 1.162 7 C -0.517 4.517 8 H 0.065 0.935 9 C -0.039 4.039 10 C 0.062 3.938 11 N -0.372 5.372 12 C 0.399 3.601 13 O -0.524 6.524 14 N -0.380 5.380 15 C 0.037 3.963 16 H 0.089 0.911 17 C -0.175 4.175 18 C -0.075 4.075 19 N -0.226 5.226 20 C -0.127 4.127 21 C -0.213 4.213 22 C -0.191 4.191 23 C -0.082 4.082 24 C -0.188 4.188 25 C -0.231 4.231 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.243 0.757 30 H 0.247 0.753 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.334 -14.321 13.510 22.717 hybrid contribution -0.761 1.460 -0.246 1.665 sum 10.573 -12.860 13.264 21.286 Atomic orbital electron populations 1.70017 1.08076 1.27872 1.52451 1.25741 0.95145 1.02551 0.93951 0.86005 0.80242 0.79341 0.78646 1.19394 1.23301 1.16214 1.20373 0.88599 0.92973 1.49717 0.93487 1.19446 0.92754 1.04121 0.87557 1.20657 0.96950 0.84032 0.92123 1.44901 1.51222 1.21801 1.19242 1.16133 0.80026 0.82721 0.81186 1.90838 1.46680 1.50591 1.64307 1.44877 1.62003 1.13476 1.17668 1.21992 0.94216 0.97819 0.82270 0.91121 1.23078 0.96445 0.99121 0.98838 1.23009 0.90439 0.97916 0.96149 1.63466 1.02232 1.48072 1.08784 1.22808 1.01136 0.99265 0.89508 1.23116 0.90500 1.04014 1.03621 1.23088 1.00986 0.93297 1.01716 1.22993 0.94913 0.92206 0.98098 1.22891 1.01456 0.93045 1.01440 1.23014 1.01866 0.95379 1.02843 0.92703 0.95237 0.92711 0.75743 0.75269 0.89894 0.91399 0.92850 0.88679 0.88919 0.88717 0.87680 0.87404 0.88515 0.89052 0.91536 0.87993 0.89528 0.90305 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 2 C 0.02 1.35 5.47 84.66 0.46 1.81 16 3 Si 0.93 44.14 24.74 68.60 1.70 45.83 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.24 -10.58 6.00 99.48 0.60 -9.98 16 7 C -0.48 -25.22 9.22 25.60 0.24 -24.98 16 8 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 9 C -0.04 -1.59 0.85 -52.93 -0.05 -1.64 16 10 C 0.19 7.72 5.24 86.38 0.45 8.17 16 11 N -0.72 -26.15 5.48 -478.53 -2.62 -28.77 16 12 C 0.70 25.02 8.55 179.06 1.53 26.55 16 13 O -0.64 -27.96 16.04 -3.99 -0.06 -28.02 16 14 N -0.72 -18.93 5.18 -452.18 -2.34 -21.28 16 15 C 0.14 3.40 3.28 46.18 0.15 3.55 16 16 H 0.07 2.03 7.62 -2.39 -0.02 2.02 16 17 C -0.14 -2.80 6.76 31.98 0.22 -2.59 16 18 C 0.05 0.89 6.73 86.77 0.58 1.48 16 19 N -0.50 -8.85 5.33 -860.37 -4.59 -13.44 16 20 C -0.02 -0.28 5.10 44.92 0.23 -0.05 16 21 C -0.18 -2.40 9.50 30.60 0.29 -2.11 16 22 C -0.15 -1.97 10.46 30.60 0.32 -1.65 16 23 C 0.05 0.87 6.23 86.65 0.54 1.41 16 24 C -0.15 -5.33 9.96 30.61 0.30 -5.03 16 25 C -0.19 -7.40 7.19 30.61 0.22 -7.18 16 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 28 H 0.05 2.13 8.09 -2.38 -0.02 2.11 16 29 H 0.41 13.69 8.36 -92.71 -0.77 12.91 16 30 H 0.41 8.50 8.39 -92.71 -0.78 7.72 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.05 0.88 7.54 -2.39 -0.02 0.86 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.41 7.70 -2.39 -0.02 1.39 16 36 H 0.09 1.40 8.04 -2.39 -0.02 1.38 16 37 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 1.59 7.72 -2.39 -0.02 1.57 16 41 H 0.07 1.27 7.13 -2.39 -0.02 1.26 16 42 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 43 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.08 3.20 6.67 -2.38 -0.02 3.19 16 45 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 Total: -1.00 -67.22 359.97 -2.80 -70.02 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.67 Total: 34.94 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.49 Total: -2.25 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -9.26 Total: -120.51 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.06 Total: -28.02 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.70 Total: 45.83 kcal Total: -67.22 -2.80 -70.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562381719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.100 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds