Wall clock time and date at job start Tue Mar 31 2020 07:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38225 * 119.61978 * 2 1 4 4 C 1.38633 * 119.16157 * 179.97438 * 3 2 1 5 5 C 1.38667 * 118.41804 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.41795 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47178 * 89.99953 * 6 5 4 8 8 C 1.46901 * 111.00024 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47409 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47406 * 59.99712 * 9 8 7 11 11 O 1.42905 * 109.46872 * 299.99796 * 9 8 7 12 12 C 1.52998 * 109.47318 * 179.97438 * 9 8 7 13 13 N 1.46906 * 109.47197 * 182.15693 * 12 9 8 14 14 C 1.46901 * 110.99925 * 199.76710 * 13 12 9 15 15 C 1.46892 * 110.99774 * 75.81142 * 13 12 9 16 16 C 1.50701 * 109.46993 * 189.99771 * 15 13 12 17 17 H 1.07994 * 120.00328 * 0.02562 * 16 15 13 18 18 C 1.37887 * 119.99865 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00027 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99584 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47098 * 60.00416 * 20 18 16 22 22 H 1.48504 * 109.46649 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47435 * 300.00203 * 20 18 16 24 24 C 1.38185 * 119.16636 * 0.27605 * 5 4 3 25 25 N 1.31856 * 119.61450 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47020 * 90.00185 * 1 2 3 27 27 H 1.09001 * 109.47052 * 209.99996 * 1 2 3 28 28 H 1.08999 * 109.47321 * 330.00302 * 1 2 3 29 29 H 1.07998 * 120.41734 * 359.97438 * 3 2 1 30 30 H 1.07993 * 120.78685 * 179.97438 * 4 3 2 31 31 H 1.09006 * 109.46941 * 329.99656 * 6 5 4 32 32 H 1.08997 * 109.47222 * 210.00267 * 6 5 4 33 33 H 1.00901 * 111.00017 * 303.95242 * 7 6 5 34 34 H 1.08995 * 109.47180 * 59.99940 * 8 7 6 35 35 H 1.09002 * 109.47373 * 300.00035 * 8 7 6 36 36 H 0.96701 * 114.00201 * 299.99769 * 11 9 8 37 37 H 1.09000 * 109.47245 * 62.15773 * 12 9 8 38 38 H 1.09002 * 109.47237 * 302.15962 * 12 9 8 39 39 H 1.08999 * 109.47031 * 291.01429 * 14 13 12 40 40 H 1.09002 * 109.47006 * 51.00954 * 14 13 12 41 41 H 1.08993 * 109.46940 * 171.01218 * 14 13 12 42 42 H 1.08994 * 109.47530 * 310.00139 * 15 13 12 43 43 H 1.09008 * 109.47253 * 70.00012 * 15 13 12 44 44 H 0.97000 * 119.99606 * 179.97438 * 19 18 16 45 45 H 1.08006 * 119.61887 * 179.70446 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5765 1.1905 0.0005 5 6 4.2266 -0.0343 0.0016 6 6 5.7323 -0.0989 0.0028 7 7 6.2204 -0.1193 1.3881 8 6 7.6875 -0.1816 1.4285 9 6 8.1573 -0.2018 2.8844 10 1 7.7426 -1.0750 3.3880 11 8 7.7127 0.9849 3.5449 12 6 9.6853 -0.2674 2.9264 13 7 10.1342 -0.3389 4.3234 14 6 11.5422 0.0621 4.4451 15 6 9.9197 -1.6824 4.8771 16 6 10.1577 -1.6564 6.3650 17 1 10.4397 -0.7340 6.8507 18 6 10.0145 -2.8102 7.1063 19 7 9.6705 -3.9334 6.5149 20 14 10.3089 -2.7777 8.9507 21 1 9.3648 -1.8236 9.5859 22 1 10.0921 -4.1360 9.5104 23 1 11.7043 -2.3480 9.2218 24 6 3.4766 -1.1948 -0.0037 25 7 2.1586 -1.1463 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6508 2.1373 -0.0004 30 1 4.1366 2.1138 0.0001 31 1 6.1338 0.7745 -0.5112 32 1 6.0575 -1.0038 -0.5104 33 1 5.8784 0.6777 1.9038 34 1 8.1023 0.6914 0.9246 35 1 8.0267 -1.0870 0.9251 36 1 8.0440 1.8028 3.1495 37 1 10.1003 0.6243 2.4566 38 1 10.0259 -1.1528 2.3896 39 1 12.1762 -0.6914 3.9779 40 1 11.6911 1.0209 3.9484 41 1 11.8038 0.1544 5.4991 42 1 8.8955 -1.9980 4.6785 43 1 10.6126 -2.3827 4.4105 44 1 9.5701 -4.7450 7.0364 45 1 3.9754 -2.1528 -0.0078 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565652206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:45 Heat of formation + Delta-G solvation = -15.738691 kcal Electronic energy + Delta-G solvation = -22771.531787 eV Core-core repulsion = 19402.674618 eV Total energy + Delta-G solvation = -3368.857169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48230 -38.26794 -36.27260 -35.20369 -33.05123 -32.48185 -32.44539 -30.11503 -28.39680 -27.25701 -25.83901 -24.26005 -23.65644 -23.06707 -21.57546 -21.36285 -20.03845 -17.02810 -16.82583 -16.43081 -16.08516 -15.79657 -15.30550 -15.10549 -14.72702 -14.54584 -14.34091 -14.19318 -13.70668 -13.37215 -13.27808 -13.20021 -12.69042 -12.63382 -12.46907 -12.33335 -11.94828 -11.82786 -11.56284 -11.37977 -11.11919 -10.91362 -10.70913 -10.61169 -10.34783 -10.03225 -9.75110 -9.69033 -9.56645 -9.13308 -9.00885 -8.47679 -8.37492 -7.18560 -5.97495 -3.98072 0.87920 1.08914 3.37571 3.41326 3.44811 3.50832 4.06189 4.16773 4.46805 4.48565 4.59813 4.68881 4.77315 4.78079 4.93849 5.08954 5.20541 5.28110 5.30506 5.34207 5.36117 5.41076 5.46972 5.57725 5.60849 5.71678 5.76428 5.78841 5.89541 6.04539 6.07041 6.08480 6.35788 6.51309 6.54371 6.71953 6.87477 7.29369 7.32547 7.34383 7.82974 7.83663 8.06592 8.13896 8.24010 8.59278 9.08673 9.65554 11.13610 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.002692 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.781097 B =10398.176037 C =11288.463082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.123 3.877 3 C -0.174 4.174 4 C -0.067 4.067 5 C -0.138 4.138 6 C 0.103 3.897 7 N -0.678 5.678 8 C 0.030 3.970 9 C 0.116 3.884 10 H 0.112 0.888 11 O -0.541 6.541 12 C 0.026 3.974 13 N -0.532 5.532 14 C 0.041 3.959 15 C 0.193 3.807 16 C -0.505 4.505 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.127 3.873 25 N -0.486 5.486 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.349 0.651 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.358 0.642 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.011 0.989 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.032 0.968 43 H -0.011 1.011 44 H 0.261 0.739 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 11.406 -17.546 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.194 4.194 4 C -0.093 4.093 5 C -0.141 4.141 6 C -0.026 4.026 7 N -0.310 5.310 8 C -0.100 4.100 9 C 0.056 3.944 10 H 0.130 0.870 11 O -0.343 6.343 12 C -0.104 4.104 13 N -0.256 5.256 14 C -0.107 4.107 15 C 0.068 3.932 16 C -0.544 4.544 17 H 0.080 0.920 18 C -0.147 4.147 19 N -0.539 5.539 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.031 4.031 25 N -0.195 5.195 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.168 0.832 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.203 0.797 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.030 0.970 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.006 0.994 44 H 0.071 0.929 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.606 9.635 -16.765 23.082 hybrid contribution 1.791 1.353 -0.152 2.250 sum -10.814 10.989 -16.917 22.888 Atomic orbital electron populations 1.20712 0.88964 1.03534 1.02920 1.21327 0.97062 0.88485 0.94633 1.21907 0.94763 0.99247 1.03449 1.21486 0.94447 0.97806 0.95605 1.20784 0.96809 0.94213 1.02246 1.20792 0.89505 1.01512 0.90826 1.60370 1.09153 1.49807 1.11669 1.22706 0.87591 1.01021 0.98709 1.21993 0.92938 0.89596 0.89885 0.87032 1.86717 1.74210 1.14852 1.58538 1.22671 0.95669 0.99800 0.92213 1.62040 1.18201 1.31410 1.13928 1.22191 0.89004 0.97304 1.02242 1.19785 0.96465 0.81951 0.95021 1.21107 1.46051 0.94995 0.92205 0.91989 1.24988 0.95498 0.95452 0.98733 1.69945 1.48261 0.99790 1.35934 0.86561 0.78644 0.76946 0.85254 1.20124 1.21382 1.20370 1.22686 0.88872 0.98271 0.93244 1.67570 1.09974 1.29307 1.12675 0.90538 0.90402 0.90773 0.84943 0.85118 0.94453 0.89844 0.83156 0.95317 0.90135 0.79742 0.92360 0.94894 0.97032 0.94013 0.90942 0.95004 0.99370 0.92911 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.17 36.01 0.37 -0.39 16 2 C 0.12 1.27 6.78 -82.58 -0.56 0.71 16 3 C -0.17 -1.55 9.74 -39.44 -0.38 -1.94 16 4 C -0.07 -0.61 9.86 -39.28 -0.39 -1.00 16 5 C -0.14 -1.42 5.41 -104.48 -0.57 -1.99 16 6 C 0.10 0.99 5.84 -4.98 -0.03 0.96 16 7 N -0.68 -8.12 6.49 -115.06 -0.75 -8.87 16 8 C 0.03 0.36 5.39 -3.82 -0.02 0.34 16 9 C 0.12 1.86 3.31 -26.73 -0.09 1.77 16 10 H 0.11 2.24 6.73 -51.93 -0.35 1.89 16 11 O -0.54 -8.78 12.58 -35.23 -0.44 -9.22 16 12 C 0.03 0.45 4.65 -3.82 -0.02 0.43 16 13 N -0.53 -11.53 4.59 -244.37 -1.12 -12.65 16 14 C 0.04 0.80 9.31 60.07 0.56 1.36 16 15 C 0.19 5.11 4.55 -4.98 -0.02 5.08 16 16 C -0.50 -14.55 8.58 -34.44 -0.30 -14.84 16 17 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 20 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.13 1.47 10.86 -17.55 -0.19 1.28 16 25 N -0.49 -6.03 10.27 -9.47 -0.10 -6.13 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.01 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.04 0.31 8.10 -51.93 -0.42 -0.11 16 32 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.35 4.25 8.11 -39.29 -0.32 3.93 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.36 4.28 9.05 45.56 0.41 4.69 16 37 H 0.06 0.84 7.75 -51.93 -0.40 0.43 16 38 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 39 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 40 H 0.04 0.67 7.85 -51.93 -0.41 0.26 16 41 H 0.07 1.51 7.01 -51.93 -0.36 1.14 16 42 H 0.03 0.90 6.60 -51.93 -0.34 0.56 16 43 H -0.01 -0.32 8.07 -51.92 -0.42 -0.74 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -33.42 371.66 -9.58 -43.00 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.75 Total: 4.38 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.73 Total: -6.74 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -1.23 Total: -54.18 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.44 Total: -9.22 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.42 -9.58 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565652206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.263 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds