Wall clock time and date at job start Tue Mar 31 2020 07:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38225 * 119.61978 * 2 1 4 4 C 1.38633 * 119.16157 * 179.97438 * 3 2 1 5 5 C 1.38667 * 118.41804 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.41795 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47178 * 89.99953 * 6 5 4 8 8 C 1.46901 * 111.00024 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47409 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47406 * 59.99712 * 9 8 7 11 11 O 1.42905 * 109.46872 * 299.99796 * 9 8 7 12 12 C 1.52998 * 109.47318 * 179.97438 * 9 8 7 13 13 N 1.46906 * 109.47197 * 182.15693 * 12 9 8 14 14 C 1.46901 * 110.99925 * 199.76710 * 13 12 9 15 15 C 1.46892 * 110.99774 * 75.81142 * 13 12 9 16 16 C 1.50701 * 109.46993 * 189.99771 * 15 13 12 17 17 H 1.07994 * 120.00328 * 0.02562 * 16 15 13 18 18 C 1.37887 * 119.99865 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00027 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99584 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47098 * 60.00416 * 20 18 16 22 22 H 1.48504 * 109.46649 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47435 * 300.00203 * 20 18 16 24 24 C 1.38185 * 119.16636 * 0.27605 * 5 4 3 25 25 N 1.31856 * 119.61450 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47020 * 90.00185 * 1 2 3 27 27 H 1.09001 * 109.47052 * 209.99996 * 1 2 3 28 28 H 1.08999 * 109.47321 * 330.00302 * 1 2 3 29 29 H 1.07998 * 120.41734 * 359.97438 * 3 2 1 30 30 H 1.07993 * 120.78685 * 179.97438 * 4 3 2 31 31 H 1.09006 * 109.46941 * 329.99656 * 6 5 4 32 32 H 1.08997 * 109.47222 * 210.00267 * 6 5 4 33 33 H 1.00901 * 111.00017 * 303.95242 * 7 6 5 34 34 H 1.08995 * 109.47180 * 59.99940 * 8 7 6 35 35 H 1.09002 * 109.47373 * 300.00035 * 8 7 6 36 36 H 0.96701 * 114.00201 * 299.99769 * 11 9 8 37 37 H 1.09000 * 109.47245 * 62.15773 * 12 9 8 38 38 H 1.09002 * 109.47237 * 302.15962 * 12 9 8 39 39 H 1.08999 * 109.47031 * 291.01429 * 14 13 12 40 40 H 1.09002 * 109.47006 * 51.00954 * 14 13 12 41 41 H 1.08993 * 109.46940 * 171.01218 * 14 13 12 42 42 H 1.08994 * 109.47530 * 310.00139 * 15 13 12 43 43 H 1.09008 * 109.47253 * 70.00012 * 15 13 12 44 44 H 0.97000 * 119.99606 * 179.97438 * 19 18 16 45 45 H 1.08006 * 119.61887 * 179.70446 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5765 1.1905 0.0005 5 6 4.2266 -0.0343 0.0016 6 6 5.7323 -0.0989 0.0028 7 7 6.2204 -0.1193 1.3881 8 6 7.6875 -0.1816 1.4285 9 6 8.1573 -0.2018 2.8844 10 1 7.7426 -1.0750 3.3880 11 8 7.7127 0.9849 3.5449 12 6 9.6853 -0.2674 2.9264 13 7 10.1342 -0.3389 4.3234 14 6 11.5422 0.0621 4.4451 15 6 9.9197 -1.6824 4.8771 16 6 10.1577 -1.6564 6.3650 17 1 10.4397 -0.7340 6.8507 18 6 10.0145 -2.8102 7.1063 19 7 9.6705 -3.9334 6.5149 20 14 10.3089 -2.7777 8.9507 21 1 9.3648 -1.8236 9.5859 22 1 10.0921 -4.1360 9.5104 23 1 11.7043 -2.3480 9.2218 24 6 3.4766 -1.1948 -0.0037 25 7 2.1586 -1.1463 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6508 2.1373 -0.0004 30 1 4.1366 2.1138 0.0001 31 1 6.1338 0.7745 -0.5112 32 1 6.0575 -1.0038 -0.5104 33 1 5.8784 0.6777 1.9038 34 1 8.1023 0.6914 0.9246 35 1 8.0267 -1.0870 0.9251 36 1 8.0440 1.8028 3.1495 37 1 10.1003 0.6243 2.4566 38 1 10.0259 -1.1528 2.3896 39 1 12.1762 -0.6914 3.9779 40 1 11.6911 1.0209 3.9484 41 1 11.8038 0.1544 5.4991 42 1 8.8955 -1.9980 4.6785 43 1 10.6126 -2.3827 4.4105 44 1 9.5701 -4.7450 7.0364 45 1 3.9754 -2.1528 -0.0078 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565652206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:45 Heat of formation + Delta-G solvation = -42.662267 kcal Electronic energy + Delta-G solvation = -22772.699281 eV Core-core repulsion = 19402.674618 eV Total energy + Delta-G solvation = -3370.024663 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22698 -39.57079 -37.59277 -36.42462 -34.60657 -33.87227 -33.21454 -31.26672 -29.53829 -29.06270 -27.02244 -25.63769 -24.64300 -24.24307 -22.76898 -22.23848 -21.66996 -18.62097 -17.87354 -17.62184 -17.26853 -16.86326 -16.55956 -16.38403 -15.95240 -15.88059 -15.45582 -15.29861 -14.96710 -14.85268 -14.29488 -14.08201 -13.95086 -13.81036 -13.43026 -13.19194 -13.14621 -13.06425 -12.93150 -12.74277 -12.56995 -12.51057 -12.32691 -12.29113 -12.12878 -11.52569 -11.34698 -10.84641 -10.72978 -10.60242 -10.38778 -9.77509 -9.32425 -8.94602 -8.20233 -6.29929 0.13086 0.35747 1.39329 1.43544 1.51171 2.40237 2.71304 3.08046 3.12893 3.41239 3.53130 3.71494 3.82296 3.86674 3.98763 4.06459 4.08388 4.18880 4.35523 4.41918 4.43774 4.58962 4.60145 4.63534 4.72452 4.78253 4.78954 4.79310 4.81985 4.89881 5.08131 5.12986 5.16648 5.20635 5.26342 5.31510 5.35165 5.64706 5.80820 6.01101 6.07634 6.35119 6.41442 6.65962 6.85979 7.06499 7.07165 7.39419 8.90800 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.002692 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.781097 B =10398.176037 C =11288.463082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.103 3.897 3 C -0.173 4.173 4 C -0.069 4.069 5 C -0.145 4.145 6 C 0.109 3.891 7 N -0.696 5.696 8 C 0.045 3.955 9 C 0.125 3.875 10 H 0.059 0.941 11 O -0.559 6.559 12 C 0.026 3.974 13 N -0.543 5.543 14 C 0.042 3.958 15 C 0.210 3.790 16 C -0.524 4.524 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.265 1.265 24 C 0.103 3.897 25 N -0.519 5.519 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.348 0.652 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.379 0.621 37 H 0.099 0.901 38 H 0.028 0.972 39 H 0.007 0.993 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.002 0.998 43 H -0.041 1.041 44 H 0.264 0.736 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 14.168 -18.087 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.035 4.035 3 C -0.192 4.192 4 C -0.095 4.095 5 C -0.147 4.147 6 C -0.019 4.019 7 N -0.329 5.329 8 C -0.085 4.085 9 C 0.064 3.936 10 H 0.077 0.923 11 O -0.365 6.365 12 C -0.103 4.103 13 N -0.267 5.267 14 C -0.106 4.106 15 C 0.084 3.916 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.190 1.190 24 C -0.054 4.054 25 N -0.229 5.229 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.114 0.886 29 H 0.180 0.820 30 H 0.175 0.825 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.227 0.773 37 H 0.118 0.882 38 H 0.046 0.954 39 H 0.026 0.974 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.020 0.980 43 H -0.023 1.023 44 H 0.073 0.927 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.405 12.426 -17.333 24.672 hybrid contribution 1.689 0.556 -0.038 1.778 sum -10.716 12.982 -17.371 24.189 Atomic orbital electron populations 1.20785 0.87184 1.04070 1.03864 1.21890 0.98505 0.88597 0.94463 1.22267 0.94968 0.99892 1.02076 1.21843 0.94858 0.98245 0.94533 1.20866 0.97112 0.94337 1.02390 1.20775 0.89065 1.02542 0.89553 1.60301 1.09091 1.50184 1.13335 1.22472 0.87913 1.02422 0.95697 1.21696 0.91985 0.88051 0.91820 0.92291 1.86663 1.74549 1.15796 1.59459 1.22809 0.96435 1.01403 0.89633 1.61930 1.19813 1.27958 1.17021 1.22218 0.87530 0.99211 1.01618 1.19378 0.93791 0.84107 0.94360 1.21457 1.46086 0.95110 0.93550 0.92085 1.25944 0.95015 0.94974 1.03975 1.70082 1.49096 1.00495 1.37926 0.85444 0.79118 0.77208 0.78904 1.19532 1.20760 1.18960 1.22799 0.89148 0.98981 0.94517 1.67544 1.10507 1.30885 1.13965 0.89313 0.91470 0.88603 0.81960 0.82527 0.92190 0.89809 0.83284 0.92040 0.90242 0.77297 0.88231 0.95386 0.97445 0.89692 0.92840 0.98011 1.02349 0.92731 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.17 71.24 0.72 -0.65 16 2 C 0.10 2.06 6.78 42.55 0.29 2.35 16 3 C -0.17 -2.73 9.74 22.36 0.22 -2.51 16 4 C -0.07 -1.11 9.86 22.47 0.22 -0.88 16 5 C -0.14 -2.86 5.41 -19.77 -0.11 -2.96 16 6 C 0.11 1.93 5.84 85.56 0.50 2.43 16 7 N -0.70 -15.99 6.49 -517.94 -3.36 -19.36 16 8 C 0.04 1.01 5.39 86.30 0.47 1.47 16 9 C 0.12 3.98 3.31 30.59 0.10 4.08 16 10 H 0.06 2.52 6.73 -2.39 -0.02 2.50 16 11 O -0.56 -17.51 12.58 -148.98 -1.87 -19.38 16 12 C 0.03 0.87 4.65 86.30 0.40 1.27 16 13 N -0.54 -23.54 4.59 -927.06 -4.25 -27.79 16 14 C 0.04 1.60 9.31 127.69 1.19 2.79 16 15 C 0.21 11.58 4.55 85.56 0.39 11.97 16 16 C -0.52 -30.88 8.58 25.60 0.22 -30.66 16 17 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 18 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 19 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 20 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 24 C 0.10 2.45 10.86 84.67 0.92 3.37 16 25 N -0.52 -13.20 10.27 -183.88 -1.89 -15.09 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 0.84 8.08 -2.39 -0.02 0.82 16 29 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 31 H 0.06 0.81 8.10 -2.38 -0.02 0.79 16 32 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 33 H 0.35 8.02 8.11 -89.69 -0.73 7.29 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.38 7.98 9.05 -74.06 -0.67 7.31 16 37 H 0.10 2.48 7.75 -2.39 -0.02 2.46 16 38 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 39 H 0.01 0.27 8.08 -2.39 -0.02 0.25 16 40 H 0.08 2.46 7.85 -2.39 -0.02 2.44 16 41 H 0.05 2.19 7.01 -2.39 -0.02 2.18 16 42 H 0.00 0.11 6.60 -2.39 -0.02 0.09 16 43 H -0.04 -2.45 8.07 -2.38 -0.02 -2.47 16 44 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -75.51 371.66 -3.49 -79.00 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.42 Total: 20.33 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.99 Total: -7.56 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -9.22 Total: -120.24 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.87 Total: -19.38 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -75.51 -3.49 -79.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565652206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.335 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds