Wall clock time and date at job start Tue Mar 31 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38230 * 119.62117 * 2 1 4 4 C 1.38628 * 119.15908 * 180.02562 * 3 2 1 5 5 C 1.38670 * 118.42474 * 0.25418 * 4 3 2 6 6 C 1.50700 * 120.42256 * 179.75252 * 5 4 3 7 7 N 1.46897 * 109.47177 * 89.99632 * 6 5 4 8 8 C 1.46900 * 110.99947 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47157 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47451 * 304.99667 * 9 8 7 11 11 O 1.42906 * 109.47109 * 64.99570 * 9 8 7 12 12 C 1.53002 * 109.47261 * 184.99642 * 9 8 7 13 13 N 1.46900 * 109.47482 * 178.51059 * 12 9 8 14 14 C 1.46895 * 111.00128 * 164.01185 * 13 12 9 15 15 C 1.46902 * 110.99357 * 287.96535 * 13 12 9 16 16 C 1.50702 * 109.46554 * 170.00116 * 15 13 12 17 17 H 1.08005 * 120.00444 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99956 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99584 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47475 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47097 * 119.99967 * 20 18 16 23 23 H 1.48497 * 109.47086 * 239.99638 * 20 18 16 24 24 C 1.38187 * 119.15849 * 359.47512 * 5 4 3 25 25 N 1.31858 * 119.61471 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.47229 * 89.99455 * 1 2 3 27 27 H 1.08992 * 109.47314 * 210.00348 * 1 2 3 28 28 H 1.09004 * 109.46916 * 330.00030 * 1 2 3 29 29 H 1.07994 * 120.42009 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.78591 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46940 * 209.99983 * 6 5 4 32 32 H 1.09000 * 109.46579 * 329.99593 * 6 5 4 33 33 H 1.00906 * 110.99907 * 303.95626 * 7 6 5 34 34 H 1.09002 * 109.46686 * 299.99891 * 8 7 6 35 35 H 1.09000 * 109.47405 * 59.99688 * 8 7 6 36 36 H 0.96700 * 113.99763 * 60.00759 * 11 9 8 37 37 H 1.09005 * 109.47087 * 298.51057 * 12 9 8 38 38 H 1.08998 * 109.47308 * 58.50389 * 12 9 8 39 39 H 1.08994 * 109.47549 * 65.47819 * 14 13 12 40 40 H 1.08998 * 109.47044 * 185.48685 * 14 13 12 41 41 H 1.09001 * 109.46867 * 305.48387 * 14 13 12 42 42 H 1.08999 * 109.47122 * 289.99505 * 15 13 12 43 43 H 1.08992 * 109.47591 * 50.00088 * 15 13 12 44 44 H 0.97000 * 119.99586 * 180.02562 * 19 18 16 45 45 H 1.08002 * 119.61402 * 180.25276 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2267 -0.0343 -0.0065 6 6 5.7323 -0.0990 -0.0129 7 7 6.2272 -0.1236 1.3699 8 6 7.6945 -0.1860 1.4028 9 6 8.1716 -0.2094 2.8563 10 1 7.7612 0.6495 3.3873 11 8 7.7276 -1.4140 3.4841 12 6 9.7000 -0.1487 2.8926 13 7 10.1566 -0.1352 4.2887 14 6 11.5872 -0.4566 4.3779 15 6 9.8666 1.1569 4.9248 16 6 10.1195 1.0550 6.4069 17 1 10.4611 0.1235 6.8338 18 6 9.9139 2.1507 7.2183 19 7 9.4976 3.2848 6.6986 20 14 10.2267 2.0243 9.0555 21 1 10.6854 0.6512 9.3863 22 1 11.2714 3.0038 9.4484 23 1 8.9714 2.3172 9.7927 24 6 3.4765 -1.1949 -0.0006 25 7 2.1586 -1.1463 0.0005 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6509 2.1373 0.0004 30 1 4.1367 2.1138 -0.0010 31 1 6.0549 -1.0024 -0.5305 32 1 6.1312 0.7759 -0.5262 33 1 5.8877 0.6719 1.8897 34 1 8.0311 -1.0899 0.8950 35 1 8.1069 0.6884 0.8995 36 1 8.0553 -2.2206 3.0633 37 1 10.1104 -1.0215 2.3846 38 1 10.0397 0.7570 2.3903 39 1 12.1673 0.3318 3.8986 40 1 11.8772 -0.5355 5.4256 41 1 11.7784 -1.4049 3.8756 42 1 10.5118 1.9248 4.4981 43 1 8.8235 1.4212 4.7515 44 1 9.3533 4.0558 7.2693 45 1 3.9754 -2.1528 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565652207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:47 Heat of formation + Delta-G solvation = -14.503159 kcal Electronic energy + Delta-G solvation = -22795.995343 eV Core-core repulsion = 19427.191750 eV Total energy + Delta-G solvation = -3368.803592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.47190 -38.18822 -36.27333 -35.14580 -33.05984 -32.47323 -32.46059 -30.06149 -28.36033 -27.27917 -25.83683 -24.24752 -23.64543 -23.06995 -21.65559 -21.36230 -19.99662 -16.96643 -16.79951 -16.50617 -16.06117 -15.55411 -15.42013 -14.98494 -14.69704 -14.55984 -14.44058 -14.16487 -13.66883 -13.40290 -13.31999 -13.15539 -12.67868 -12.61485 -12.47597 -12.34269 -11.96854 -11.79251 -11.52996 -11.37769 -11.14033 -10.92677 -10.70043 -10.61372 -10.34542 -10.01407 -9.75203 -9.65506 -9.47491 -9.12320 -8.99627 -8.45301 -8.40540 -7.19465 -6.00977 -4.00886 0.88730 1.10256 3.33081 3.40409 3.45935 3.51620 4.06838 4.16837 4.45463 4.50006 4.59719 4.69568 4.78628 4.84736 4.94932 5.09538 5.23014 5.30223 5.30811 5.33727 5.35052 5.46338 5.47090 5.60650 5.61567 5.69872 5.73663 5.77074 5.91817 6.03796 6.08264 6.10153 6.33868 6.49339 6.52712 6.72233 6.86733 7.24783 7.28639 7.31605 7.82428 7.82878 8.09753 8.18983 8.28193 8.57472 9.06631 9.62980 11.10319 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.002746 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.443709 B =10193.880093 C =11139.701972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.123 3.877 3 C -0.173 4.173 4 C -0.067 4.067 5 C -0.138 4.138 6 C 0.103 3.897 7 N -0.674 5.674 8 C 0.028 3.972 9 C 0.118 3.882 10 H 0.100 0.900 11 O -0.530 6.530 12 C 0.026 3.974 13 N -0.531 5.531 14 C 0.040 3.960 15 C 0.192 3.808 16 C -0.502 4.502 17 H 0.064 0.936 18 C 0.053 3.947 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.284 1.284 24 C 0.127 3.873 25 N -0.487 5.487 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.345 0.655 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.361 0.639 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.009 0.991 40 H 0.074 0.926 41 H 0.043 0.957 42 H -0.012 1.012 43 H 0.031 0.969 44 H 0.260 0.740 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 -5.170 -17.947 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.193 4.193 4 C -0.093 4.093 5 C -0.140 4.140 6 C -0.027 4.027 7 N -0.305 5.305 8 C -0.102 4.102 9 C 0.058 3.942 10 H 0.118 0.882 11 O -0.333 6.333 12 C -0.104 4.104 13 N -0.255 5.255 14 C -0.108 4.108 15 C 0.067 3.933 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.148 4.148 19 N -0.541 5.541 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.210 1.210 24 C -0.031 4.031 25 N -0.196 5.196 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.164 0.836 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.206 0.794 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.028 0.972 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.005 0.995 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.205 -6.380 -17.166 22.008 hybrid contribution 1.732 2.231 -0.136 2.828 sum -10.473 -4.149 -17.302 20.646 Atomic orbital electron populations 1.20708 0.88964 1.03533 1.02909 1.21317 0.97044 0.88479 0.94673 1.21921 0.94780 0.99288 1.03298 1.21523 0.94486 0.97920 0.95388 1.20783 0.96794 0.94207 1.02261 1.20795 0.89504 1.01461 0.90913 1.60429 1.09065 1.49507 1.11533 1.22753 0.87593 1.00957 0.98880 1.21869 0.92627 0.89602 0.90142 0.88180 1.86702 1.74661 1.14284 1.57619 1.22681 0.95780 0.99678 0.92246 1.62033 1.15499 1.36029 1.11935 1.22194 0.88755 0.97569 1.02328 1.19780 0.96243 0.82924 0.94350 1.21199 1.43925 0.97061 0.91861 0.91809 1.24991 0.95485 0.95306 0.98968 1.69964 1.47047 1.01673 1.35431 0.86440 0.77771 0.78042 0.85177 1.19632 1.21204 1.20992 1.22638 0.88864 0.98166 0.93423 1.67558 1.09967 1.29319 1.12803 0.90551 0.90437 0.90744 0.84898 0.85017 0.89936 0.94378 0.83636 0.90777 0.94576 0.79442 0.92075 0.95350 0.97210 0.90776 0.93851 0.99468 0.95099 0.93070 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.00 0.37 -0.40 16 2 C 0.12 1.28 6.78 -82.58 -0.56 0.72 16 3 C -0.17 -1.62 9.74 -39.44 -0.38 -2.00 16 4 C -0.07 -0.64 9.86 -39.28 -0.39 -1.03 16 5 C -0.14 -1.43 5.41 -104.48 -0.57 -2.00 16 6 C 0.10 0.99 5.84 -4.98 -0.03 0.96 16 7 N -0.67 -8.09 6.44 -115.06 -0.74 -8.83 16 8 C 0.03 0.34 5.32 -3.83 -0.02 0.32 16 9 C 0.12 1.91 3.17 -26.73 -0.08 1.82 16 10 H 0.10 1.93 6.55 -51.93 -0.34 1.59 16 11 O -0.53 -9.22 13.18 -35.23 -0.46 -9.68 16 12 C 0.03 0.44 4.63 -3.82 -0.02 0.43 16 13 N -0.53 -11.51 4.60 -244.38 -1.12 -12.63 16 14 C 0.04 0.78 9.32 60.06 0.56 1.34 16 15 C 0.19 5.04 4.57 -4.97 -0.02 5.02 16 16 C -0.50 -14.37 8.54 -34.44 -0.29 -14.66 16 17 H 0.06 1.83 7.10 -52.48 -0.37 1.45 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 20 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.13 1.43 10.86 -17.55 -0.19 1.23 16 25 N -0.49 -5.94 10.27 -9.47 -0.10 -6.04 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.04 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.35 4.41 8.72 -39.29 -0.34 4.07 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.36 4.84 9.05 45.56 0.41 5.25 16 37 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 38 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 39 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 40 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 41 H 0.04 0.71 7.97 -51.93 -0.41 0.29 16 42 H -0.01 -0.35 8.11 -51.93 -0.42 -0.77 16 43 H 0.03 0.86 6.38 -51.93 -0.33 0.53 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -33.29 372.47 -9.60 -42.89 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.77 Total: 4.73 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.73 Total: -6.81 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -1.23 Total: -53.76 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.46 Total: -9.68 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.29 -9.60 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565652207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.388 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds