Wall clock time and date at job start Tue Mar 31 2020 07:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38230 * 119.62117 * 2 1 4 4 C 1.38628 * 119.15908 * 180.02562 * 3 2 1 5 5 C 1.38670 * 118.42474 * 0.25418 * 4 3 2 6 6 C 1.50700 * 120.42256 * 179.75252 * 5 4 3 7 7 N 1.46897 * 109.47177 * 89.99632 * 6 5 4 8 8 C 1.46900 * 110.99947 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47157 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47451 * 304.99667 * 9 8 7 11 11 O 1.42906 * 109.47109 * 64.99570 * 9 8 7 12 12 C 1.53002 * 109.47261 * 184.99642 * 9 8 7 13 13 N 1.46900 * 109.47482 * 178.51059 * 12 9 8 14 14 C 1.46895 * 111.00128 * 164.01185 * 13 12 9 15 15 C 1.46902 * 110.99357 * 287.96535 * 13 12 9 16 16 C 1.50702 * 109.46554 * 170.00116 * 15 13 12 17 17 H 1.08005 * 120.00444 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99956 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99584 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47475 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47097 * 119.99967 * 20 18 16 23 23 H 1.48497 * 109.47086 * 239.99638 * 20 18 16 24 24 C 1.38187 * 119.15849 * 359.47512 * 5 4 3 25 25 N 1.31858 * 119.61471 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.47229 * 89.99455 * 1 2 3 27 27 H 1.08992 * 109.47314 * 210.00348 * 1 2 3 28 28 H 1.09004 * 109.46916 * 330.00030 * 1 2 3 29 29 H 1.07994 * 120.42009 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.78591 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46940 * 209.99983 * 6 5 4 32 32 H 1.09000 * 109.46579 * 329.99593 * 6 5 4 33 33 H 1.00906 * 110.99907 * 303.95626 * 7 6 5 34 34 H 1.09002 * 109.46686 * 299.99891 * 8 7 6 35 35 H 1.09000 * 109.47405 * 59.99688 * 8 7 6 36 36 H 0.96700 * 113.99763 * 60.00759 * 11 9 8 37 37 H 1.09005 * 109.47087 * 298.51057 * 12 9 8 38 38 H 1.08998 * 109.47308 * 58.50389 * 12 9 8 39 39 H 1.08994 * 109.47549 * 65.47819 * 14 13 12 40 40 H 1.08998 * 109.47044 * 185.48685 * 14 13 12 41 41 H 1.09001 * 109.46867 * 305.48387 * 14 13 12 42 42 H 1.08999 * 109.47122 * 289.99505 * 15 13 12 43 43 H 1.08992 * 109.47591 * 50.00088 * 15 13 12 44 44 H 0.97000 * 119.99586 * 180.02562 * 19 18 16 45 45 H 1.08002 * 119.61402 * 180.25276 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2267 -0.0343 -0.0065 6 6 5.7323 -0.0990 -0.0129 7 7 6.2272 -0.1236 1.3699 8 6 7.6945 -0.1860 1.4028 9 6 8.1716 -0.2094 2.8563 10 1 7.7612 0.6495 3.3873 11 8 7.7276 -1.4140 3.4841 12 6 9.7000 -0.1487 2.8926 13 7 10.1566 -0.1352 4.2887 14 6 11.5872 -0.4566 4.3779 15 6 9.8666 1.1569 4.9248 16 6 10.1195 1.0550 6.4069 17 1 10.4611 0.1235 6.8338 18 6 9.9139 2.1507 7.2183 19 7 9.4976 3.2848 6.6986 20 14 10.2267 2.0243 9.0555 21 1 10.6854 0.6512 9.3863 22 1 11.2714 3.0038 9.4484 23 1 8.9714 2.3172 9.7927 24 6 3.4765 -1.1949 -0.0006 25 7 2.1586 -1.1463 0.0005 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6509 2.1373 0.0004 30 1 4.1367 2.1138 -0.0010 31 1 6.0549 -1.0024 -0.5305 32 1 6.1312 0.7759 -0.5262 33 1 5.8877 0.6719 1.8897 34 1 8.0311 -1.0899 0.8950 35 1 8.1069 0.6884 0.8995 36 1 8.0553 -2.2206 3.0633 37 1 10.1104 -1.0215 2.3846 38 1 10.0397 0.7570 2.3903 39 1 12.1673 0.3318 3.8986 40 1 11.8772 -0.5355 5.4256 41 1 11.7784 -1.4049 3.8756 42 1 10.5118 1.9248 4.4981 43 1 8.8235 1.4212 4.7515 44 1 9.3533 4.0558 7.2693 45 1 3.9754 -2.1528 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565652207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:46 Heat of formation + Delta-G solvation = -41.130137 kcal Electronic energy + Delta-G solvation = -22797.149975 eV Core-core repulsion = 19427.191750 eV Total energy + Delta-G solvation = -3369.958225 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22699 -39.52162 -37.54873 -36.43100 -34.60415 -33.89764 -33.21810 -31.21483 -29.53972 -29.05144 -27.01555 -25.63037 -24.63618 -24.23606 -22.87144 -22.24136 -21.61730 -18.61433 -17.90959 -17.60649 -17.09707 -16.87092 -16.60697 -16.35374 -15.88816 -15.86983 -15.51874 -15.31973 -14.90127 -14.86412 -14.42534 -14.07688 -13.97432 -13.74028 -13.42439 -13.20128 -13.15029 -13.03454 -12.93385 -12.72146 -12.57610 -12.53641 -12.32470 -12.25692 -12.16142 -11.50058 -11.29762 -10.81528 -10.69190 -10.61248 -10.39033 -9.77470 -9.34002 -8.93966 -8.21356 -6.30064 0.12730 0.34299 1.38816 1.40498 1.53752 2.39846 2.71069 3.08158 3.12308 3.41283 3.51380 3.74149 3.82563 3.87826 3.95346 4.04421 4.07068 4.22378 4.37038 4.42205 4.46822 4.55106 4.61777 4.62622 4.72306 4.76136 4.78338 4.78676 4.79328 4.89830 5.07874 5.12198 5.16627 5.20365 5.24934 5.31140 5.34490 5.65007 5.79917 5.99676 6.07313 6.27244 6.35548 6.66275 6.85999 7.05615 7.16092 7.39191 8.90021 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.002746 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.443709 B =10193.880093 C =11139.701972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.105 3.895 3 C -0.176 4.176 4 C -0.075 4.075 5 C -0.145 4.145 6 C 0.109 3.891 7 N -0.686 5.686 8 C 0.043 3.957 9 C 0.124 3.876 10 H 0.057 0.943 11 O -0.554 6.554 12 C 0.026 3.974 13 N -0.544 5.544 14 C 0.042 3.958 15 C 0.209 3.791 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.279 1.279 24 C 0.110 3.890 25 N -0.516 5.516 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.148 0.852 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.337 0.663 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.378 0.622 37 H 0.099 0.901 38 H 0.027 0.973 39 H 0.008 0.992 40 H 0.053 0.947 41 H 0.083 0.917 42 H -0.041 1.041 43 H 0.005 0.995 44 H 0.264 0.736 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 -5.792 -18.641 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.032 4.032 3 C -0.195 4.195 4 C -0.101 4.101 5 C -0.147 4.147 6 C -0.020 4.020 7 N -0.317 5.317 8 C -0.087 4.087 9 C 0.064 3.936 10 H 0.076 0.924 11 O -0.360 6.360 12 C -0.103 4.103 13 N -0.268 5.268 14 C -0.107 4.107 15 C 0.083 3.917 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.205 1.205 24 C -0.048 4.048 25 N -0.226 5.226 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.176 0.824 30 H 0.166 0.834 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.226 0.774 37 H 0.117 0.883 38 H 0.046 0.954 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.102 0.898 42 H -0.024 1.024 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.022 -7.031 -17.890 22.672 hybrid contribution 1.646 2.400 0.028 2.910 sum -10.376 -4.631 -17.862 21.170 Atomic orbital electron populations 1.20778 0.87133 1.04083 1.03887 1.21855 0.98497 0.88498 0.94376 1.22240 0.94896 1.00010 1.02367 1.21832 0.94991 0.98392 0.94869 1.20873 0.97160 0.94270 1.02423 1.20801 0.89002 1.02584 0.89613 1.60432 1.08942 1.49290 1.13023 1.22556 0.87762 1.02493 0.95855 1.21681 0.91842 0.87957 0.92118 0.92450 1.86651 1.75113 1.15389 1.58817 1.22810 0.96457 1.01250 0.89757 1.61930 1.17061 1.32944 1.14865 1.22213 0.87372 0.99468 1.01613 1.19385 0.93947 0.84546 0.93820 1.21517 1.44080 0.97043 0.93316 0.92220 1.25907 0.95051 0.94879 1.03970 1.70082 1.47746 1.02423 1.37293 0.85356 0.77878 0.78445 0.79089 1.18855 1.20163 1.20497 1.22848 0.88982 0.98938 0.93988 1.67563 1.10553 1.30533 1.13924 0.89275 0.91159 0.88895 0.82414 0.83403 0.88698 0.93204 0.84580 0.88320 0.93767 0.77385 0.88290 0.95445 0.97313 0.92830 0.89823 1.02358 0.97703 0.92746 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.17 71.24 0.72 -0.66 16 2 C 0.11 2.12 6.78 42.55 0.29 2.41 16 3 C -0.18 -3.06 9.74 22.36 0.22 -2.84 16 4 C -0.07 -1.36 9.86 22.47 0.22 -1.13 16 5 C -0.14 -2.89 5.41 -19.77 -0.11 -2.99 16 6 C 0.11 1.92 5.84 85.56 0.50 2.42 16 7 N -0.69 -15.80 6.44 -517.94 -3.34 -19.13 16 8 C 0.04 0.97 5.32 86.30 0.46 1.43 16 9 C 0.12 3.98 3.17 30.59 0.10 4.07 16 10 H 0.06 2.33 6.55 -2.39 -0.02 2.32 16 11 O -0.55 -18.90 13.18 -148.98 -1.96 -20.86 16 12 C 0.03 0.87 4.63 86.30 0.40 1.26 16 13 N -0.54 -23.52 4.60 -927.07 -4.27 -27.78 16 14 C 0.04 1.57 9.32 127.69 1.19 2.77 16 15 C 0.21 11.37 4.57 85.56 0.39 11.76 16 16 C -0.52 -30.47 8.54 25.60 0.22 -30.25 16 17 H 0.06 3.46 7.10 -2.91 -0.02 3.44 16 18 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 19 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 20 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 21 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 C 0.11 2.44 10.86 84.67 0.92 3.36 16 25 N -0.52 -12.56 10.27 -183.88 -1.89 -14.45 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 0.89 8.08 -2.38 -0.02 0.87 16 29 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 32 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 33 H 0.34 8.63 8.72 -89.69 -0.78 7.85 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.38 9.42 9.05 -74.06 -0.67 8.75 16 37 H 0.10 2.52 7.88 -2.38 -0.02 2.50 16 38 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 39 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 40 H 0.05 2.22 6.90 -2.39 -0.02 2.21 16 41 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 42 H -0.04 -2.41 8.11 -2.39 -0.02 -2.43 16 43 H 0.00 0.29 6.38 -2.39 -0.02 0.28 16 44 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -73.53 372.47 -3.63 -77.16 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.47 Total: 22.39 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.98 Total: -7.96 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -9.21 Total: -118.22 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.96 Total: -20.86 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.53 -3.63 -77.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565652207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.034 kcal (2) G-P(sol) polarization free energy of solvation -73.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds