Wall clock time and date at job start Tue Mar 31 2020 06:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46574 * 2 1 4 4 C 1.42906 * 113.99492 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47015 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.46778 * 65.00280 * 5 4 3 7 7 C 1.35907 * 116.99963 * 179.97438 * 6 5 4 8 8 C 1.38753 * 120.05299 * 0.02562 * 7 6 5 9 9 C 1.38127 * 119.94475 * 179.97438 * 8 7 6 10 10 C 1.50699 * 119.97364 * 179.97438 * 9 8 7 11 11 C 1.38292 * 120.05282 * 359.97438 * 9 8 7 12 12 C 1.38244 * 120.11101 * 359.75185 * 11 9 8 13 13 C 1.38170 * 120.05543 * 0.50165 * 12 11 9 14 14 C 1.50703 * 120.02679 * 179.77247 * 13 12 11 15 15 N 1.46899 * 109.47107 * 259.72343 * 14 13 12 16 16 C 1.46904 * 111.00029 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46800 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00575 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99722 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99924 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47032 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47236 * 120.00183 * 21 19 17 24 24 H 1.48500 * 109.46924 * 239.99946 * 21 19 17 25 25 H 1.09003 * 109.47013 * 299.99628 * 1 2 3 26 26 H 1.08999 * 109.47485 * 60.00131 * 1 2 3 27 27 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47013 * 240.00372 * 2 1 3 29 29 H 1.08997 * 109.47173 * 120.00292 * 2 1 3 30 30 H 1.09000 * 109.46877 * 60.00265 * 4 3 2 31 31 H 1.08997 * 109.46883 * 300.00235 * 4 3 2 32 32 H 1.09003 * 109.47306 * 305.00475 * 5 4 3 33 33 H 1.08996 * 109.47334 * 184.99746 * 5 4 3 34 34 H 1.08000 * 120.03245 * 359.95359 * 8 7 6 35 35 H 1.09001 * 109.46853 * 89.99662 * 10 9 8 36 36 H 1.09000 * 109.47158 * 209.99892 * 10 9 8 37 37 H 1.08998 * 109.46999 * 330.00321 * 10 9 8 38 38 H 1.07995 * 119.94352 * 179.97438 * 11 9 8 39 39 H 1.07999 * 119.97355 * 180.25002 * 12 11 9 40 40 H 1.09002 * 109.47152 * 139.72431 * 14 13 12 41 41 H 1.09001 * 109.46980 * 19.72531 * 14 13 12 42 42 H 1.00902 * 111.00582 * 303.95889 * 15 14 13 43 43 H 1.08995 * 109.47167 * 300.00240 * 16 15 14 44 44 H 1.09003 * 109.46442 * 60.00214 * 16 15 14 45 45 H 0.96998 * 120.00185 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 8 3.3984 3.5458 1.2199 7 6 3.6736 4.8669 1.3811 8 6 4.3404 5.5645 0.3841 9 6 4.6184 6.9073 0.5500 10 6 5.3430 7.6654 -0.5322 11 6 4.2324 7.5565 1.7085 12 6 3.5630 6.8649 2.7009 13 6 3.2871 5.5204 2.5419 14 6 2.5619 4.7660 3.6264 15 7 3.5308 4.0014 4.4229 16 6 2.8583 3.2520 5.4926 17 6 3.8819 2.4824 6.2868 18 1 4.9276 2.5440 6.0236 19 6 3.4836 1.6995 7.3495 20 7 2.2104 1.6248 7.6703 21 14 4.7525 0.7460 8.3344 22 1 6.1048 0.9982 7.7752 23 1 4.7123 1.1868 9.7519 24 1 4.4490 -0.7057 8.2588 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8332 0.9768 -0.8908 31 1 3.8339 0.9765 0.8891 32 1 3.3490 3.4413 -0.8429 33 1 4.9080 3.0256 -0.0911 34 1 4.6420 5.0580 -0.5208 35 1 4.6178 8.0882 -1.2275 36 1 5.9277 8.4687 -0.0839 37 1 6.0076 6.9877 -1.0679 38 1 4.4511 8.6062 1.8365 39 1 3.2590 7.3751 3.6029 40 1 1.8428 4.0825 3.1749 41 1 2.0375 5.4713 4.2711 42 1 4.0752 3.3861 3.8371 43 1 2.3362 3.9470 6.1502 44 1 2.1410 2.5581 5.0543 45 1 1.9300 1.0737 8.4177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565946610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:19 Heat of formation + Delta-G solvation = -73.740421 kcal Electronic energy + Delta-G solvation = -23437.770406 eV Core-core repulsion = 20034.105342 eV Total energy + Delta-G solvation = -3403.665064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17547 -38.27364 -37.20840 -35.38073 -33.06216 -32.04146 -31.67740 -30.06086 -29.08085 -28.26515 -25.95176 -23.67874 -23.29058 -22.84738 -21.63259 -21.22998 -20.55708 -17.67717 -17.02185 -16.47516 -16.07811 -15.94858 -15.40267 -15.24271 -14.59362 -14.51728 -14.17676 -13.96085 -13.69175 -13.44334 -13.25361 -13.01241 -12.91311 -12.62224 -12.18001 -12.12782 -11.91375 -11.68512 -11.43203 -11.39920 -11.26541 -11.10760 -11.04375 -10.77157 -10.64815 -10.61023 -10.40400 -9.85237 -9.67998 -9.09677 -8.55037 -8.41011 -7.87001 -7.11637 -5.96283 -3.97400 1.51329 1.65640 3.28626 3.34402 3.41303 3.47046 3.54456 3.92137 4.49211 4.72127 4.87086 4.94848 4.95267 5.01039 5.06245 5.10643 5.20888 5.25064 5.32005 5.33036 5.39431 5.45265 5.51555 5.52783 5.66189 5.71605 5.75743 5.81241 5.85370 5.88995 6.07626 6.12583 6.19740 6.48565 6.50767 6.68632 6.85868 7.03054 7.11213 7.36922 7.54847 7.61925 7.87083 8.21844 8.53666 8.73406 9.12629 9.66831 11.14957 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.008863 B = 0.004871 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.338613 B = 5747.333458 C = 8076.460610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.063 3.937 5 C 0.064 3.936 6 O -0.298 6.298 7 C 0.138 3.862 8 C -0.213 4.213 9 C -0.061 4.061 10 C -0.111 4.111 11 C -0.160 4.160 12 C -0.064 4.064 13 C -0.099 4.099 14 C 0.104 3.896 15 N -0.682 5.682 16 C 0.194 3.806 17 C -0.509 4.509 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.330 0.670 43 H 0.027 0.973 44 H -0.013 1.013 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 4.506 -20.537 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.013 4.013 5 C -0.012 4.012 6 O -0.211 6.211 7 C 0.092 3.908 8 C -0.232 4.232 9 C -0.061 4.061 10 C -0.168 4.168 11 C -0.178 4.178 12 C -0.083 4.083 13 C -0.100 4.100 14 C -0.026 4.026 15 N -0.312 5.312 16 C 0.067 3.933 17 C -0.548 4.548 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.212 1.212 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.147 0.853 43 H 0.045 0.955 44 H 0.004 0.996 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.939 4.959 -19.854 20.555 hybrid contribution 0.472 -1.502 -0.091 1.577 sum 2.411 3.457 -19.945 20.385 Atomic orbital electron populations 1.21734 0.93701 1.02161 1.03265 1.22470 0.95799 0.83683 1.00017 1.87968 1.20203 1.26468 1.95416 1.22516 0.82629 0.94795 1.01408 1.22776 0.99078 0.92645 0.86692 1.86218 1.75962 1.20492 1.38399 1.18854 0.94921 0.82986 0.94050 1.20971 1.06869 0.95449 0.99888 1.19582 0.97669 0.93244 0.95593 1.20758 0.99456 0.99739 0.96822 1.20864 1.02778 0.99839 0.94353 1.20892 0.96263 0.92820 0.98278 1.19420 1.02588 0.93990 0.94025 1.20671 0.93578 0.96426 0.91886 1.60772 1.24573 1.31896 1.13970 1.19556 0.93730 0.91520 0.88484 1.21233 0.94073 1.26077 1.13385 0.92029 1.24982 0.95313 0.96927 0.97386 1.69980 1.14639 1.40386 1.28819 0.86455 0.81691 0.79432 0.79910 1.19698 1.21011 1.21175 0.91427 0.92122 0.91166 0.93729 0.92954 0.91485 0.91641 0.91520 0.90651 0.86048 0.91392 0.91550 0.91891 0.86308 0.85317 0.94934 0.91259 0.85336 0.95504 0.99567 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.65 6.66 37.16 0.25 0.90 16 3 O -0.38 -5.38 10.31 -40.09 -0.41 -5.80 16 4 C 0.06 0.74 6.32 37.15 0.23 0.97 16 5 C 0.06 0.77 5.12 37.15 0.19 0.96 16 6 O -0.30 -4.93 9.29 -24.30 -0.23 -5.16 16 7 C 0.14 2.24 6.66 -39.22 -0.26 1.98 16 8 C -0.21 -2.89 8.69 -39.43 -0.34 -3.23 16 9 C -0.06 -0.76 5.88 -104.64 -0.62 -1.38 16 10 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 11 C -0.16 -2.11 9.70 -39.56 -0.38 -2.49 16 12 C -0.06 -0.98 9.67 -39.60 -0.38 -1.36 16 13 C -0.10 -1.73 5.41 -104.47 -0.56 -2.30 16 14 C 0.10 2.10 5.48 -4.98 -0.03 2.07 16 15 N -0.68 -16.05 6.48 -116.34 -0.75 -16.80 16 16 C 0.19 5.38 5.44 -4.98 -0.03 5.35 16 17 C -0.51 -15.02 9.32 -34.44 -0.32 -15.34 16 18 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 21 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 33 H 0.08 0.75 7.66 -51.93 -0.40 0.35 16 34 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.81 8.03 -52.49 -0.42 1.39 16 40 H 0.03 0.70 7.85 -51.93 -0.41 0.29 16 41 H 0.07 1.36 8.00 -51.93 -0.42 0.95 16 42 H 0.33 7.74 8.66 -39.29 -0.34 7.40 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 44 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -33.44 376.24 -9.36 -42.80 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.75 Total: 3.10 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -1.61 Total: -14.20 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.02 Total: -43.62 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.64 Total: -10.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.44 -9.36 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565946610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.936 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds