Wall clock time and date at job start Tue Mar 31 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46574 * 2 1 4 4 C 1.42906 * 113.99492 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47015 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.46778 * 65.00280 * 5 4 3 7 7 C 1.35907 * 116.99963 * 179.97438 * 6 5 4 8 8 C 1.38753 * 120.05299 * 0.02562 * 7 6 5 9 9 C 1.38127 * 119.94475 * 179.97438 * 8 7 6 10 10 C 1.50699 * 119.97364 * 179.97438 * 9 8 7 11 11 C 1.38292 * 120.05282 * 359.97438 * 9 8 7 12 12 C 1.38244 * 120.11101 * 359.75185 * 11 9 8 13 13 C 1.38170 * 120.05543 * 0.50165 * 12 11 9 14 14 C 1.50703 * 120.02679 * 179.77247 * 13 12 11 15 15 N 1.46899 * 109.47107 * 259.72343 * 14 13 12 16 16 C 1.46904 * 111.00029 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46800 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00575 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99722 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99924 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47032 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47236 * 120.00183 * 21 19 17 24 24 H 1.48500 * 109.46924 * 239.99946 * 21 19 17 25 25 H 1.09003 * 109.47013 * 299.99628 * 1 2 3 26 26 H 1.08999 * 109.47485 * 60.00131 * 1 2 3 27 27 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47013 * 240.00372 * 2 1 3 29 29 H 1.08997 * 109.47173 * 120.00292 * 2 1 3 30 30 H 1.09000 * 109.46877 * 60.00265 * 4 3 2 31 31 H 1.08997 * 109.46883 * 300.00235 * 4 3 2 32 32 H 1.09003 * 109.47306 * 305.00475 * 5 4 3 33 33 H 1.08996 * 109.47334 * 184.99746 * 5 4 3 34 34 H 1.08000 * 120.03245 * 359.95359 * 8 7 6 35 35 H 1.09001 * 109.46853 * 89.99662 * 10 9 8 36 36 H 1.09000 * 109.47158 * 209.99892 * 10 9 8 37 37 H 1.08998 * 109.46999 * 330.00321 * 10 9 8 38 38 H 1.07995 * 119.94352 * 179.97438 * 11 9 8 39 39 H 1.07999 * 119.97355 * 180.25002 * 12 11 9 40 40 H 1.09002 * 109.47152 * 139.72431 * 14 13 12 41 41 H 1.09001 * 109.46980 * 19.72531 * 14 13 12 42 42 H 1.00902 * 111.00582 * 303.95889 * 15 14 13 43 43 H 1.08995 * 109.47167 * 300.00240 * 16 15 14 44 44 H 1.09003 * 109.46442 * 60.00214 * 16 15 14 45 45 H 0.96998 * 120.00185 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 8 3.3984 3.5458 1.2199 7 6 3.6736 4.8669 1.3811 8 6 4.3404 5.5645 0.3841 9 6 4.6184 6.9073 0.5500 10 6 5.3430 7.6654 -0.5322 11 6 4.2324 7.5565 1.7085 12 6 3.5630 6.8649 2.7009 13 6 3.2871 5.5204 2.5419 14 6 2.5619 4.7660 3.6264 15 7 3.5308 4.0014 4.4229 16 6 2.8583 3.2520 5.4926 17 6 3.8819 2.4824 6.2868 18 1 4.9276 2.5440 6.0236 19 6 3.4836 1.6995 7.3495 20 7 2.2104 1.6248 7.6703 21 14 4.7525 0.7460 8.3344 22 1 6.1048 0.9982 7.7752 23 1 4.7123 1.1868 9.7519 24 1 4.4490 -0.7057 8.2588 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8332 0.9768 -0.8908 31 1 3.8339 0.9765 0.8891 32 1 3.3490 3.4413 -0.8429 33 1 4.9080 3.0256 -0.0911 34 1 4.6420 5.0580 -0.5208 35 1 4.6178 8.0882 -1.2275 36 1 5.9277 8.4687 -0.0839 37 1 6.0076 6.9877 -1.0679 38 1 4.4511 8.6062 1.8365 39 1 3.2590 7.3751 3.6029 40 1 1.8428 4.0825 3.1749 41 1 2.0375 5.4713 4.2711 42 1 4.0752 3.3861 3.8371 43 1 2.3362 3.9470 6.1502 44 1 2.1410 2.5581 5.0543 45 1 1.9300 1.0737 8.4177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565946610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:18 Heat of formation + Delta-G solvation = -95.678257 kcal Electronic energy + Delta-G solvation = -23438.721702 eV Core-core repulsion = 20034.105342 eV Total energy + Delta-G solvation = -3404.616360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30262 -39.28039 -38.27687 -37.17885 -34.89996 -33.43753 -32.83345 -31.09847 -30.06646 -29.83911 -27.65841 -24.98922 -24.58394 -23.74343 -23.36298 -22.59763 -21.76882 -18.87269 -18.50008 -17.97925 -17.25502 -17.07634 -16.77823 -16.42505 -16.36124 -15.86128 -15.54628 -15.11986 -15.05017 -14.62950 -14.52188 -14.30765 -13.95928 -13.84594 -13.49875 -13.42065 -13.14169 -12.92516 -12.80917 -12.69888 -12.60762 -12.50402 -12.31846 -12.20187 -12.09472 -12.06210 -11.70915 -11.58701 -11.27497 -10.68833 -10.62759 -9.66552 -9.20476 -8.94805 -8.23521 -6.35704 0.38454 0.54683 1.38966 1.40642 1.54868 2.26763 2.38958 2.66018 2.78809 3.08876 3.70707 3.79332 3.91340 3.97456 4.06163 4.11418 4.14402 4.19693 4.25485 4.31433 4.39841 4.43123 4.45257 4.57494 4.64562 4.68634 4.80696 4.82341 4.89541 4.90161 4.98140 4.99114 5.05151 5.20108 5.21969 5.30526 5.39791 5.58036 5.61263 5.70455 5.95866 5.99093 6.20030 6.39961 6.55348 6.66011 6.84894 7.34958 8.88587 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.008863 B = 0.004871 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.338613 B = 5747.333458 C = 8076.460610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.412 6.412 4 C 0.059 3.941 5 C 0.056 3.944 6 O -0.331 6.331 7 C 0.125 3.875 8 C -0.213 4.213 9 C -0.053 4.053 10 C -0.110 4.110 11 C -0.161 4.161 12 C -0.072 4.072 13 C -0.136 4.136 14 C 0.113 3.887 15 N -0.675 5.675 16 C 0.210 3.790 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.001 3.999 20 N -0.934 5.934 21 Si 0.977 3.023 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.107 0.893 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.011 0.989 41 H 0.066 0.934 42 H 0.331 0.669 43 H 0.001 0.999 44 H -0.046 1.046 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 4.940 -22.486 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.333 6.333 4 C -0.017 4.017 5 C -0.018 4.018 6 O -0.246 6.246 7 C 0.079 3.921 8 C -0.232 4.232 9 C -0.054 4.054 10 C -0.166 4.166 11 C -0.179 4.179 12 C -0.090 4.090 13 C -0.137 4.137 14 C -0.016 4.016 15 N -0.305 5.305 16 C 0.082 3.918 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.165 0.835 39 H 0.150 0.850 40 H 0.029 0.971 41 H 0.084 0.916 42 H 0.147 0.853 43 H 0.019 0.981 44 H -0.028 1.028 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.274 5.407 -21.827 22.890 hybrid contribution -0.286 -1.588 0.418 1.667 sum 3.988 3.819 -21.409 22.110 Atomic orbital electron populations 1.21766 0.93388 1.03356 1.02278 1.22643 0.96208 0.82899 1.00829 1.87932 1.21685 1.28021 1.95619 1.22715 0.81677 0.94922 1.02375 1.23101 1.00640 0.92562 0.85499 1.86184 1.76655 1.20969 1.40747 1.19028 0.95458 0.83197 0.94424 1.21282 1.05932 0.95979 0.99968 1.20106 0.96125 0.93045 0.96086 1.20846 0.99802 1.00014 0.95925 1.21198 1.01759 1.01123 0.93847 1.21036 0.96608 0.92089 0.99315 1.19253 1.05274 0.94999 0.94145 1.20548 0.92983 0.95663 0.92412 1.60696 1.24936 1.30872 1.13958 1.19212 0.92992 0.90455 0.89140 1.21516 0.94220 1.27152 1.14380 0.91961 1.25997 0.97696 0.97667 0.98319 1.70114 1.16913 1.40990 1.29435 0.85227 0.78785 0.77868 0.78055 1.18684 1.20052 1.20074 0.94001 0.91445 0.88908 0.90770 0.94146 0.87563 0.93422 0.90263 0.88199 0.83336 0.89820 0.90183 0.90502 0.83455 0.85046 0.97112 0.91572 0.85303 0.98072 1.02844 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 10.28 71.98 0.74 -2.48 16 2 C 0.05 1.15 6.66 71.98 0.48 1.63 16 3 O -0.41 -11.84 10.31 -144.34 -1.49 -13.33 16 4 C 0.06 1.36 6.32 71.98 0.45 1.81 16 5 C 0.06 1.31 5.12 71.98 0.37 1.68 16 6 O -0.33 -11.30 9.29 -87.86 -0.82 -12.12 16 7 C 0.12 4.08 6.66 22.50 0.15 4.23 16 8 C -0.21 -5.33 8.69 22.37 0.19 -5.13 16 9 C -0.05 -1.18 5.88 -19.88 -0.12 -1.30 16 10 C -0.11 -1.50 10.01 71.24 0.71 -0.78 16 11 C -0.16 -3.90 9.70 22.28 0.22 -3.68 16 12 C -0.07 -2.19 9.67 22.25 0.22 -1.98 16 13 C -0.14 -4.91 5.41 -19.77 -0.11 -5.01 16 14 C 0.11 4.91 5.48 85.56 0.47 5.38 16 15 N -0.67 -33.63 6.48 -521.98 -3.38 -37.01 16 16 C 0.21 12.39 5.44 85.55 0.47 12.85 16 17 C -0.53 -32.55 9.32 25.60 0.24 -32.31 16 18 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 19 C 0.00 0.07 5.46 84.66 0.46 0.54 16 20 N -0.93 -58.78 13.29 21.45 0.28 -58.49 16 21 Si 0.98 45.86 29.54 68.60 2.03 47.88 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.61 7.66 -2.39 -0.02 1.59 16 33 H 0.10 1.77 7.66 -2.39 -0.02 1.75 16 34 H 0.15 2.79 6.30 -2.91 -0.02 2.77 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 37 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.13 3.76 8.03 -2.91 -0.02 3.74 16 40 H 0.01 0.51 7.85 -2.39 -0.02 0.49 16 41 H 0.07 2.82 8.00 -2.39 -0.02 2.80 16 42 H 0.33 16.35 8.66 -89.69 -0.78 15.57 16 43 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 44 H -0.05 -2.96 8.14 -2.39 -0.02 -2.97 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -75.60 376.24 1.75 -73.86 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.18 Total: 23.75 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 4.94 Total: -24.54 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -3.10 Total: -95.50 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -2.30 Total: -25.44 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -75.60 1.75 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565946610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.820 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds