Wall clock time and date at job start Tue Mar 31 2020 07:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99785 * 2 1 4 4 H 1.48502 * 109.47031 * 270.00387 * 3 2 1 5 5 H 1.48502 * 109.47166 * 29.99767 * 3 2 1 6 6 H 1.48499 * 109.47376 * 150.00155 * 3 2 1 7 7 C 1.37867 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00076 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99932 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46958 * 180.02562 * 9 7 2 11 11 C 1.53117 * 109.52114 * 175.00101 * 10 9 7 12 12 C 1.53044 * 109.27792 * 177.56078 * 11 10 9 13 13 N 1.46847 * 109.51335 * 300.82256 * 12 11 10 14 14 C 1.46901 * 111.00144 * 185.83239 * 13 12 11 15 15 C 1.53000 * 109.47158 * 170.00079 * 14 13 12 16 16 H 1.08998 * 109.46977 * 59.99901 * 15 14 13 17 17 O 1.42902 * 109.47093 * 300.00183 * 15 14 13 18 18 C 1.52994 * 109.47134 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.47258 * 185.00132 * 18 15 14 20 20 C 1.34949 * 126.03621 * 125.00166 * 19 18 15 21 21 C 1.35324 * 107.74356 * 179.97438 * 20 19 18 22 22 C 1.39867 * 107.91874 * 0.02562 * 21 20 19 23 23 N 1.30844 * 108.20361 * 359.73531 * 22 21 20 24 24 C 1.46830 * 111.21086 * 61.74856 * 13 12 11 25 25 C 1.53038 * 109.51757 * 298.25173 * 24 13 12 26 26 H 0.97001 * 120.00101 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47388 * 60.00147 * 9 7 2 28 28 H 1.08997 * 109.47232 * 299.99966 * 9 7 2 29 29 H 1.08998 * 109.52583 * 54.87512 * 10 9 7 30 30 H 1.09001 * 109.50874 * 57.62258 * 11 10 9 31 31 H 1.09002 * 109.53469 * 297.51379 * 11 10 9 32 32 H 1.09002 * 109.46396 * 60.83566 * 12 11 10 33 33 H 1.08994 * 109.46485 * 180.81491 * 12 11 10 34 34 H 1.09001 * 109.46985 * 290.00439 * 14 13 12 35 35 H 1.09002 * 109.46593 * 50.00429 * 14 13 12 36 36 H 0.96696 * 114.00439 * 300.00057 * 17 15 14 37 37 H 1.08998 * 109.47220 * 305.00076 * 18 15 14 38 38 H 1.09003 * 109.47365 * 64.99763 * 18 15 14 39 39 H 1.07997 * 126.13142 * 359.97438 * 20 19 18 40 40 H 1.07994 * 126.03554 * 179.97438 * 21 20 19 41 41 H 1.08007 * 125.89533 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.46742 * 178.23410 * 24 13 12 43 43 H 1.09004 * 109.45381 * 58.25744 * 24 13 12 44 44 H 1.08997 * 109.50308 * 299.23764 * 25 24 13 45 45 H 1.09000 * 109.50697 * 179.11489 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5475 -2.6395 -0.1263 12 6 6.0567 -4.0815 -0.0644 13 7 5.6516 -4.6904 1.2090 14 6 6.2396 -6.0277 1.3637 15 6 6.0058 -6.5257 2.7913 16 1 4.9349 -6.5747 2.9882 17 8 6.6194 -5.6256 3.7162 18 6 6.6187 -7.9182 2.9526 19 7 6.2924 -8.4447 4.2802 20 6 5.6847 -9.6212 4.5403 21 6 5.5667 -9.7363 5.8834 22 6 6.1207 -8.5907 6.4639 23 7 6.5608 -7.8182 5.5040 24 6 4.1894 -4.7416 1.3320 25 6 3.6245 -3.3195 1.3117 26 1 -0.4850 0.8400 0.0004 27 1 3.8753 -0.6795 0.8894 28 1 3.8745 -0.6806 -0.8905 29 1 3.5854 -3.1771 -0.8399 30 1 5.9817 -2.0649 0.6919 31 1 5.8354 -2.1926 -1.0779 32 1 5.6330 -4.6520 -0.8909 33 1 7.1440 -4.0863 -0.1395 34 1 5.7716 -6.7142 0.6581 35 1 7.3106 -5.9786 1.1668 36 1 7.5748 -5.5324 3.5995 37 1 6.2157 -8.5832 2.1888 38 1 7.7014 -7.8535 2.8434 39 1 5.3522 -10.3418 3.8078 40 1 5.1224 -10.5658 6.4134 41 1 6.1796 -8.3822 7.5220 42 1 3.9205 -5.2258 2.2708 43 1 3.7746 -5.3090 0.4988 44 1 4.0284 -2.7555 2.1525 45 1 2.5378 -3.3583 1.3873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566173295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:33 Heat of formation + Delta-G solvation = 24.373738 kcal Electronic energy + Delta-G solvation = -23602.278224 eV Core-core repulsion = 20235.160461 eV Total energy + Delta-G solvation = -3367.117763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28220 -39.21371 -37.34695 -34.39874 -33.38846 -32.25264 -30.54737 -30.30720 -29.78408 -28.10273 -25.62183 -23.48787 -22.97057 -21.64852 -21.18980 -20.80824 -20.41769 -19.00439 -17.69798 -16.69242 -16.54010 -16.04968 -15.48703 -15.27092 -14.55824 -14.39985 -14.22812 -14.15454 -13.69082 -13.61063 -13.28659 -12.97257 -12.93202 -12.64003 -12.52417 -12.08761 -11.85160 -11.81263 -11.34863 -11.24121 -10.86942 -10.74367 -10.72048 -10.52536 -10.30608 -10.09739 -9.68517 -9.57010 -9.50449 -9.24439 -8.97748 -8.75212 -8.48643 -8.14594 -5.99720 -3.96541 1.74081 2.28403 2.72013 3.34008 3.41742 3.46658 3.71628 4.16758 4.38459 4.49905 4.52156 4.60083 4.77876 4.86312 4.93089 4.98343 5.22553 5.28374 5.33592 5.39450 5.40622 5.51507 5.57640 5.65408 5.72325 5.78516 5.82813 5.93436 6.05301 6.16772 6.33853 6.48704 6.49638 6.57557 6.79298 6.87137 6.97259 7.08038 7.20767 7.27203 7.35724 7.54491 7.57656 7.67921 7.85760 8.59337 9.05275 9.63732 11.13756 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002889 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.514174 B = 9690.192393 C =10164.690606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.114 4.114 12 C 0.061 3.939 13 N -0.524 5.524 14 C 0.024 3.976 15 C 0.104 3.896 16 H 0.102 0.898 17 O -0.522 6.522 18 C 0.099 3.901 19 N -0.369 5.369 20 C 0.044 3.956 21 C -0.275 4.275 22 C 0.033 3.967 23 N -0.265 5.265 24 C 0.055 3.945 25 C -0.100 4.100 26 H 0.262 0.738 27 H 0.017 0.983 28 H 0.009 0.991 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.368 0.632 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.170 0.830 40 H 0.145 0.855 41 H 0.181 0.819 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.975 -20.241 5.550 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.152 4.152 12 C -0.067 4.067 13 N -0.248 5.248 14 C -0.105 4.105 15 C 0.043 3.957 16 H 0.120 0.880 17 O -0.325 6.325 18 C -0.023 4.023 19 N -0.151 5.151 20 C -0.102 4.102 21 C -0.305 4.305 22 C -0.154 4.154 23 N -0.086 5.086 24 C -0.072 4.072 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.214 0.786 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.198 0.802 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.992 -18.607 5.701 25.189 hybrid contribution 0.072 -0.615 -0.826 1.032 sum 16.063 -19.222 4.876 25.521 Atomic orbital electron populations 1.69918 1.06287 1.26759 1.51600 1.25032 0.94701 0.99133 0.94742 0.86798 0.80479 0.83765 0.78366 1.20469 1.21508 1.18944 1.21153 0.89539 0.94267 1.50193 0.91014 1.19609 0.97062 0.91805 0.96136 1.21047 0.92413 0.98842 0.96801 1.21722 0.97628 0.94423 1.01437 1.22096 0.99221 0.96397 0.88978 1.61829 1.10249 1.18554 1.34181 1.22718 1.00462 0.91428 0.95901 1.22151 0.98699 0.85921 0.88977 0.88036 1.86762 1.25160 1.64664 1.55868 1.22509 1.02011 0.97945 0.79860 1.48604 1.45920 1.14595 1.05996 1.22572 0.99327 0.90264 0.98002 1.21503 1.13348 1.02529 0.93090 1.23969 0.98874 0.93079 0.99462 1.77588 1.22550 1.19995 0.88474 1.22244 0.86047 0.99249 0.99681 1.21532 1.00992 0.92799 0.98411 0.92862 0.96508 0.97258 0.92552 0.91505 0.92136 0.95396 0.91663 0.94298 0.90505 0.78569 0.88024 0.89449 0.81261 0.83759 0.80238 0.91433 0.95528 0.91736 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.61 9.00 -34.44 -0.31 -14.92 16 8 H 0.07 2.18 7.32 -52.49 -0.38 1.80 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.43 2.20 -90.49 -0.20 -1.63 16 11 C -0.11 -1.86 5.38 -26.65 -0.14 -2.01 16 12 C 0.06 0.82 5.46 -3.83 -0.02 0.79 16 13 N -0.52 -7.07 4.52 -234.68 -1.06 -8.13 16 14 C 0.02 0.23 4.62 -3.82 -0.02 0.22 16 15 C 0.10 1.03 3.06 -26.73 -0.08 0.95 16 16 H 0.10 1.23 6.43 -51.93 -0.33 0.90 16 17 O -0.52 -6.46 12.24 -35.23 -0.43 -6.89 16 18 C 0.10 0.74 6.18 -4.04 -0.02 0.71 16 19 N -0.37 -3.73 3.68 -61.37 -0.23 -3.95 16 20 C 0.04 0.38 11.45 -17.22 -0.20 0.18 16 21 C -0.28 -2.47 10.80 -40.01 -0.43 -2.90 16 22 C 0.03 0.34 12.03 -17.36 -0.21 0.13 16 23 N -0.27 -3.31 11.57 30.63 0.35 -2.96 16 24 C 0.06 0.84 5.29 -3.84 -0.02 0.82 16 25 C -0.10 -1.89 5.15 -26.65 -0.14 -2.03 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 28 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.75 8.01 -51.93 -0.42 0.34 16 34 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.08 0.61 7.99 -51.93 -0.41 0.19 16 36 H 0.37 3.43 9.04 45.56 0.41 3.84 16 37 H 0.10 0.48 8.07 -51.93 -0.42 0.07 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.18 1.38 8.06 -52.48 -0.42 0.95 16 42 H 0.07 1.01 6.21 -51.93 -0.32 0.69 16 43 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.08 1.63 7.05 -51.93 -0.37 1.26 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -34.50 356.30 -8.71 -43.20 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.83 Total: 1.54 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.99 Total: -18.19 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.16 Total: -42.51 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.43 Total: -6.89 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.50 -8.71 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566173295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.577 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds