Wall clock time and date at job start Tue Mar 31 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99785 * 2 1 4 4 H 1.48502 * 109.47031 * 270.00387 * 3 2 1 5 5 H 1.48502 * 109.47166 * 29.99767 * 3 2 1 6 6 H 1.48499 * 109.47376 * 150.00155 * 3 2 1 7 7 C 1.37867 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00076 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99932 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46958 * 180.02562 * 9 7 2 11 11 C 1.53117 * 109.52114 * 175.00101 * 10 9 7 12 12 C 1.53044 * 109.27792 * 177.56078 * 11 10 9 13 13 N 1.46847 * 109.51335 * 300.82256 * 12 11 10 14 14 C 1.46901 * 111.00144 * 185.83239 * 13 12 11 15 15 C 1.53000 * 109.47158 * 170.00079 * 14 13 12 16 16 H 1.08998 * 109.46977 * 59.99901 * 15 14 13 17 17 O 1.42902 * 109.47093 * 300.00183 * 15 14 13 18 18 C 1.52994 * 109.47134 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.47258 * 185.00132 * 18 15 14 20 20 C 1.34949 * 126.03621 * 125.00166 * 19 18 15 21 21 C 1.35324 * 107.74356 * 179.97438 * 20 19 18 22 22 C 1.39867 * 107.91874 * 0.02562 * 21 20 19 23 23 N 1.30844 * 108.20361 * 359.73531 * 22 21 20 24 24 C 1.46830 * 111.21086 * 61.74856 * 13 12 11 25 25 C 1.53038 * 109.51757 * 298.25173 * 24 13 12 26 26 H 0.97001 * 120.00101 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47388 * 60.00147 * 9 7 2 28 28 H 1.08997 * 109.47232 * 299.99966 * 9 7 2 29 29 H 1.08998 * 109.52583 * 54.87512 * 10 9 7 30 30 H 1.09001 * 109.50874 * 57.62258 * 11 10 9 31 31 H 1.09002 * 109.53469 * 297.51379 * 11 10 9 32 32 H 1.09002 * 109.46396 * 60.83566 * 12 11 10 33 33 H 1.08994 * 109.46485 * 180.81491 * 12 11 10 34 34 H 1.09001 * 109.46985 * 290.00439 * 14 13 12 35 35 H 1.09002 * 109.46593 * 50.00429 * 14 13 12 36 36 H 0.96696 * 114.00439 * 300.00057 * 17 15 14 37 37 H 1.08998 * 109.47220 * 305.00076 * 18 15 14 38 38 H 1.09003 * 109.47365 * 64.99763 * 18 15 14 39 39 H 1.07997 * 126.13142 * 359.97438 * 20 19 18 40 40 H 1.07994 * 126.03554 * 179.97438 * 21 20 19 41 41 H 1.08007 * 125.89533 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.46742 * 178.23410 * 24 13 12 43 43 H 1.09004 * 109.45381 * 58.25744 * 24 13 12 44 44 H 1.08997 * 109.50308 * 299.23764 * 25 24 13 45 45 H 1.09000 * 109.50697 * 179.11489 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5475 -2.6395 -0.1263 12 6 6.0567 -4.0815 -0.0644 13 7 5.6516 -4.6904 1.2090 14 6 6.2396 -6.0277 1.3637 15 6 6.0058 -6.5257 2.7913 16 1 4.9349 -6.5747 2.9882 17 8 6.6194 -5.6256 3.7162 18 6 6.6187 -7.9182 2.9526 19 7 6.2924 -8.4447 4.2802 20 6 5.6847 -9.6212 4.5403 21 6 5.5667 -9.7363 5.8834 22 6 6.1207 -8.5907 6.4639 23 7 6.5608 -7.8182 5.5040 24 6 4.1894 -4.7416 1.3320 25 6 3.6245 -3.3195 1.3117 26 1 -0.4850 0.8400 0.0004 27 1 3.8753 -0.6795 0.8894 28 1 3.8745 -0.6806 -0.8905 29 1 3.5854 -3.1771 -0.8399 30 1 5.9817 -2.0649 0.6919 31 1 5.8354 -2.1926 -1.0779 32 1 5.6330 -4.6520 -0.8909 33 1 7.1440 -4.0863 -0.1395 34 1 5.7716 -6.7142 0.6581 35 1 7.3106 -5.9786 1.1668 36 1 7.5748 -5.5324 3.5995 37 1 6.2157 -8.5832 2.1888 38 1 7.7014 -7.8535 2.8434 39 1 5.3522 -10.3418 3.8078 40 1 5.1224 -10.5658 6.4134 41 1 6.1796 -8.3822 7.5220 42 1 3.9205 -5.2258 2.2708 43 1 3.7746 -5.3090 0.4988 44 1 4.0284 -2.7555 2.1525 45 1 2.5378 -3.3583 1.3873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566173295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:32 Heat of formation + Delta-G solvation = -1.270509 kcal Electronic energy + Delta-G solvation = -23603.390242 eV Core-core repulsion = 20235.160461 eV Total energy + Delta-G solvation = -3368.229781 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.95203 -40.32630 -38.35381 -35.92503 -34.28670 -34.04136 -31.80087 -31.26056 -30.80713 -29.45377 -26.73281 -24.88176 -24.27120 -22.72133 -21.98610 -21.72779 -21.52297 -20.49591 -18.88282 -18.40879 -17.28868 -16.87252 -16.49256 -16.36868 -16.17378 -15.42838 -15.34334 -15.09257 -14.91249 -14.75595 -14.66509 -14.26552 -14.12724 -13.63729 -13.57740 -13.40162 -13.19216 -12.90285 -12.74148 -12.59066 -12.26649 -12.10024 -12.05617 -11.86380 -11.67770 -11.45610 -11.24978 -11.10279 -10.87692 -10.81084 -10.71404 -10.22160 -9.42483 -9.16281 -8.28179 -6.30343 1.07620 1.33396 1.36262 1.48275 1.69667 2.02664 2.36198 2.84257 3.07190 3.50243 3.64489 3.81972 3.96669 4.00752 4.06661 4.07569 4.17994 4.19332 4.33419 4.38397 4.43499 4.54991 4.59161 4.66575 4.75869 4.78581 4.81662 4.91666 4.95661 4.99629 5.08402 5.09945 5.20228 5.23483 5.32434 5.38557 5.50170 5.70544 5.73308 5.81333 6.14178 6.19036 6.27360 6.32398 6.76740 6.87571 6.99421 7.33501 8.88628 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002889 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.514174 B = 9690.192393 C =10164.690606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.250 1.250 7 C -0.519 4.519 8 H 0.033 0.967 9 C -0.006 4.006 10 C -0.069 4.069 11 C -0.109 4.109 12 C 0.066 3.934 13 N -0.537 5.537 14 C 0.029 3.971 15 C 0.108 3.892 16 H 0.073 0.927 17 O -0.551 6.551 18 C 0.100 3.900 19 N -0.376 5.376 20 C 0.045 3.955 21 C -0.290 4.290 22 C 0.017 3.983 23 N -0.313 5.313 24 C 0.069 3.931 25 C -0.096 4.096 26 H 0.264 0.736 27 H 0.012 0.988 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.379 0.621 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.206 0.794 40 H 0.163 0.837 41 H 0.194 0.806 42 H 0.067 0.933 43 H 0.031 0.969 44 H 0.048 0.952 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.839 -21.461 4.573 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.557 4.557 8 H 0.051 0.949 9 C -0.044 4.044 10 C -0.088 4.088 11 C -0.147 4.147 12 C -0.062 4.062 13 N -0.262 5.262 14 C -0.099 4.099 15 C 0.047 3.953 16 H 0.091 0.909 17 O -0.356 6.356 18 C -0.021 4.021 19 N -0.159 5.159 20 C -0.101 4.101 21 C -0.319 4.319 22 C -0.169 4.169 23 N -0.134 5.134 24 C -0.059 4.059 25 C -0.134 4.134 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.227 0.773 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.223 0.777 40 H 0.181 0.819 41 H 0.211 0.789 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 18.884 -19.846 4.720 27.799 hybrid contribution -0.900 -0.314 -0.496 1.074 sum 17.985 -20.161 4.224 27.345 Atomic orbital electron populations 1.70073 1.08223 1.27947 1.53285 1.26007 0.95594 1.03437 0.94494 0.85686 0.79430 0.78532 0.79171 1.18995 1.21172 1.17390 1.21473 0.92038 0.92883 1.49328 0.94851 1.19575 0.93943 0.94901 0.95940 1.20962 0.95406 0.95882 0.96556 1.21644 0.94156 0.97026 1.01845 1.22070 1.00930 0.94140 0.89027 1.61751 1.08503 1.21403 1.34534 1.22777 1.01862 0.89462 0.95817 1.22059 0.97216 0.87219 0.88766 0.90904 1.86722 1.26286 1.65617 1.56990 1.22652 1.03059 0.96816 0.79582 1.48828 1.45988 1.15009 1.06108 1.23215 0.97966 0.90161 0.98724 1.21853 1.13611 1.02739 0.93718 1.24393 0.98737 0.93552 1.00174 1.77504 1.24429 1.21669 0.89835 1.21965 0.87851 0.96156 0.99921 1.21393 0.98894 0.95495 0.97593 0.92674 0.96981 0.96530 0.93525 0.92182 0.90869 0.94766 0.88524 0.92485 0.87708 0.77292 0.84745 0.87764 0.77691 0.81928 0.78908 0.91450 0.95117 0.93319 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.40 13.96 21.44 0.30 -61.11 16 2 C 0.00 0.04 5.47 84.65 0.46 0.51 16 3 Si 0.95 45.86 27.47 68.60 1.88 47.74 16 4 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 7 C -0.52 -30.63 9.00 25.60 0.23 -30.40 16 8 H 0.03 2.16 7.32 -2.91 -0.02 2.14 16 9 C -0.01 -0.30 3.52 29.85 0.11 -0.20 16 10 C -0.07 -2.75 2.20 -10.71 -0.02 -2.78 16 11 C -0.11 -3.32 5.38 30.65 0.16 -3.16 16 12 C 0.07 1.54 5.46 86.33 0.47 2.01 16 13 N -0.54 -13.23 4.52 -896.39 -4.05 -17.28 16 14 C 0.03 0.46 4.62 86.30 0.40 0.86 16 15 C 0.11 1.94 3.06 30.59 0.09 2.03 16 16 H 0.07 1.72 6.43 -2.39 -0.02 1.71 16 17 O -0.55 -13.11 12.24 -148.98 -1.82 -14.93 16 18 C 0.10 1.19 6.18 86.38 0.53 1.72 16 19 N -0.38 -6.93 3.68 -348.06 -1.28 -8.21 16 20 C 0.05 0.66 11.45 83.54 0.96 1.62 16 21 C -0.29 -4.82 10.80 21.99 0.24 -4.58 16 22 C 0.02 0.36 12.03 85.23 1.02 1.38 16 23 N -0.31 -7.68 11.57 -57.02 -0.66 -8.34 16 24 C 0.07 2.09 5.29 86.33 0.46 2.54 16 25 C -0.10 -3.77 5.15 30.65 0.16 -3.61 16 26 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 27 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 28 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 1.74 8.01 -2.39 -0.02 1.72 16 34 H 0.06 0.74 8.12 -2.39 -0.02 0.73 16 35 H 0.10 1.13 7.99 -2.39 -0.02 1.11 16 36 H 0.38 6.51 9.04 -74.06 -0.67 5.84 16 37 H 0.13 0.68 8.07 -2.39 -0.02 0.66 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.19 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.07 2.04 6.21 -2.39 -0.01 2.02 16 43 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.87 7.05 -2.39 -0.02 1.85 16 Total: -1.00 -78.51 356.30 -0.13 -78.64 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.24 Total: 15.54 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 5.27 Total: -32.05 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -5.69 Total: -94.94 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.82 Total: -14.93 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -78.51 -0.13 -78.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566173295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.369 kcal (2) G-P(sol) polarization free energy of solvation -78.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds