Wall clock time and date at job start Tue Mar 31 2020 07:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99866 * 2 1 4 4 H 1.48501 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47032 * 299.99946 * 3 2 1 6 6 H 1.48493 * 109.47149 * 60.00288 * 3 2 1 7 7 C 1.37877 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99702 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00441 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47419 * 180.02562 * 9 7 2 11 11 C 1.53122 * 109.52301 * 174.99976 * 10 9 7 12 12 C 1.53033 * 109.27983 * 177.55679 * 11 10 9 13 13 N 1.46846 * 109.52457 * 300.82412 * 12 11 10 14 14 C 1.46900 * 110.99748 * 185.83241 * 13 12 11 15 15 C 1.53011 * 109.46780 * 75.85599 * 14 13 12 16 16 H 1.09005 * 109.46603 * 300.48213 * 15 14 13 17 17 O 1.42901 * 109.47169 * 60.48378 * 15 14 13 18 18 C 1.52997 * 109.47009 * 180.48927 * 15 14 13 19 19 N 1.46501 * 109.47188 * 174.99565 * 18 15 14 20 20 C 1.34947 * 126.03699 * 124.94416 * 19 18 15 21 21 C 1.35318 * 107.74667 * 180.02562 * 20 19 18 22 22 C 1.39871 * 107.91900 * 0.02562 * 21 20 19 23 23 N 1.30843 * 108.20323 * 359.97438 * 22 21 20 24 24 C 1.46852 * 111.19950 * 61.73974 * 13 12 11 25 25 C 1.53036 * 109.52215 * 298.25876 * 24 13 12 26 26 H 0.96993 * 120.00239 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46847 * 59.99685 * 9 7 2 28 28 H 1.08996 * 109.46708 * 300.00443 * 9 7 2 29 29 H 1.09000 * 109.52003 * 54.87446 * 10 9 7 30 30 H 1.09010 * 109.50114 * 57.61916 * 11 10 9 31 31 H 1.08998 * 109.53393 * 297.52490 * 11 10 9 32 32 H 1.08996 * 109.46410 * 180.80129 * 12 11 10 33 33 H 1.09005 * 109.45162 * 60.83231 * 12 11 10 34 34 H 1.08988 * 109.47678 * 315.85243 * 14 13 12 35 35 H 1.09003 * 109.47030 * 195.84519 * 14 13 12 36 36 H 0.96698 * 113.99736 * 60.00730 * 17 15 14 37 37 H 1.09003 * 109.47331 * 54.99701 * 18 15 14 38 38 H 1.09001 * 109.47240 * 294.99613 * 18 15 14 39 39 H 1.08001 * 126.12453 * 0.05153 * 20 19 18 40 40 H 1.07998 * 126.03912 * 180.26399 * 21 20 19 41 41 H 1.07994 * 125.89869 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.45799 * 58.27352 * 24 13 12 43 43 H 1.08997 * 109.46237 * 178.24323 * 24 13 12 44 44 H 1.09000 * 109.50076 * 299.24072 * 25 24 13 45 45 H 1.08996 * 109.53698 * 179.13815 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4851 -4.9853 0.1253 12 6 2.4793 -6.1471 0.0634 13 7 3.2097 -6.1007 -1.2097 14 6 4.0738 -7.2786 -1.3640 15 6 3.2190 -8.4937 -1.7299 16 1 2.4860 -8.6724 -0.9432 17 8 2.5424 -8.2459 -2.9640 18 6 4.1174 -9.7231 -1.8787 19 7 3.2885 -10.9085 -2.1110 20 6 3.3998 -11.7643 -3.1485 21 6 2.4543 -12.7205 -2.9977 22 6 1.7403 -12.4392 -1.8284 23 7 2.2396 -11.3533 -1.2959 24 6 3.9852 -4.8596 -1.3320 25 6 3.0359 -3.6594 -1.3118 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.9313 -3.5548 0.8397 30 1 0.7706 -5.0737 -0.6933 31 1 0.9536 -5.0113 1.0765 32 1 1.9397 -7.0912 0.1384 33 1 3.1849 -6.0654 0.8902 34 1 4.5966 -7.4710 -0.4272 35 1 4.8010 -7.0946 -2.1548 36 1 3.1342 -8.0783 -3.7102 37 1 4.6998 -9.8600 -0.9676 38 1 4.7918 -9.5803 -2.7230 39 1 4.1157 -11.6980 -3.9545 40 1 2.2839 -13.5557 -3.6609 41 1 0.9193 -13.0186 -1.4328 42 1 4.6837 -4.7842 -0.4986 43 1 4.5393 -4.8686 -2.2706 44 1 2.3459 -3.7270 -2.1529 45 1 3.6124 -2.7374 -1.3873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566173300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:35 Heat of formation + Delta-G solvation = 18.260486 kcal Electronic energy + Delta-G solvation = -23469.044734 eV Core-core repulsion = 20101.661880 eV Total energy + Delta-G solvation = -3367.382854 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31407 -39.13968 -37.38800 -34.34032 -33.41496 -32.27019 -30.52342 -30.34584 -29.65888 -27.69818 -25.48796 -23.75640 -22.61478 -21.91888 -21.24785 -20.78395 -20.57302 -18.89191 -17.74780 -16.45918 -16.28753 -16.12976 -15.46574 -15.34551 -14.69179 -14.44892 -14.26514 -13.98231 -13.74445 -13.53023 -13.27108 -13.07075 -12.97355 -12.45520 -12.24366 -12.07361 -11.90615 -11.43417 -11.35318 -11.09361 -10.83749 -10.76993 -10.65106 -10.62298 -10.44630 -10.19171 -9.90345 -9.55364 -9.51844 -9.03428 -8.84183 -8.75483 -8.30978 -8.08813 -5.95303 -3.96778 1.71353 2.25698 2.68628 3.32349 3.39915 3.43145 3.76790 4.05876 4.38434 4.48732 4.56556 4.59168 4.75273 4.83190 4.97460 5.01271 5.29204 5.33464 5.37360 5.40051 5.45321 5.55060 5.62713 5.70595 5.75282 5.81163 5.93309 5.95471 6.13922 6.26824 6.44946 6.46689 6.60069 6.69311 6.77898 7.00485 7.11664 7.22510 7.28839 7.36144 7.49874 7.57796 7.73710 7.90576 8.05988 8.48674 9.10128 9.66499 11.16103 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041442 B = 0.002564 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.481786 B =10918.334641 C =11198.492598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.111 4.111 12 C 0.059 3.941 13 N -0.524 5.524 14 C 0.024 3.976 15 C 0.104 3.896 16 H 0.111 0.889 17 O -0.534 6.534 18 C 0.100 3.900 19 N -0.362 5.362 20 C 0.054 3.946 21 C -0.277 4.277 22 C 0.042 3.958 23 N -0.290 5.290 24 C 0.058 3.942 25 C -0.099 4.099 26 H 0.259 0.741 27 H 0.017 0.983 28 H 0.014 0.986 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.367 0.633 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.170 0.830 40 H 0.145 0.855 41 H 0.181 0.819 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.545 -23.669 -6.142 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.099 4.099 11 C -0.149 4.149 12 C -0.069 4.069 13 N -0.248 5.248 14 C -0.105 4.105 15 C 0.043 3.957 16 H 0.129 0.871 17 O -0.338 6.338 18 C -0.023 4.023 19 N -0.144 5.144 20 C -0.093 4.093 21 C -0.307 4.307 22 C -0.144 4.144 23 N -0.112 5.112 24 C -0.070 4.070 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.213 0.787 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.188 0.812 40 H 0.163 0.837 41 H 0.198 0.802 42 H 0.044 0.956 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.550 -22.673 -5.149 25.135 hybrid contribution 1.674 0.437 -0.367 1.768 sum 11.223 -22.235 -5.515 25.511 Atomic orbital electron populations 1.69975 1.06014 1.26328 1.51201 1.25029 0.94804 0.99139 0.95606 0.86597 0.80080 0.84154 0.77523 1.19849 1.21087 1.21130 1.21288 0.92905 0.91036 1.49916 0.92708 1.19120 0.93644 0.91032 0.97162 1.21229 0.97876 0.94814 0.96024 1.21679 0.97569 0.94087 1.01582 1.22160 0.96426 0.99653 0.88625 1.61798 1.27327 1.00850 1.34859 1.22707 0.94919 0.92025 1.00895 1.22220 0.94796 0.89878 0.88811 0.87080 1.86746 1.36329 1.93076 1.17614 1.22513 0.92364 0.83490 1.03922 1.48515 1.26455 1.20934 1.18496 1.22520 1.01154 0.92140 0.93472 1.21481 1.02112 1.04593 1.02497 1.23877 1.00259 0.94990 0.95304 1.77356 1.01850 1.14261 1.17693 1.22228 0.95264 0.90014 0.99469 1.21540 0.97850 0.95315 0.98990 0.93153 0.96469 0.96776 0.93145 0.91478 0.92165 0.91635 0.95492 0.93899 0.90663 0.78738 0.89000 0.88348 0.81246 0.83728 0.80181 0.95583 0.91739 0.91759 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -14.42 8.45 -34.44 -0.29 -14.71 16 8 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 9 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 10 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 11 C -0.11 -2.02 5.38 -26.65 -0.14 -2.16 16 12 C 0.06 0.89 5.29 -3.84 -0.02 0.87 16 13 N -0.52 -7.37 4.46 -234.67 -1.05 -8.42 16 14 C 0.02 0.24 4.67 -3.82 -0.02 0.23 16 15 C 0.10 1.05 3.15 -26.73 -0.08 0.97 16 16 H 0.11 1.44 6.74 -51.93 -0.35 1.09 16 17 O -0.53 -6.34 13.16 -35.23 -0.46 -6.81 16 18 C 0.10 0.75 6.15 -4.04 -0.02 0.72 16 19 N -0.36 -3.63 3.63 -61.36 -0.22 -3.86 16 20 C 0.05 0.44 11.45 -17.22 -0.20 0.25 16 21 C -0.28 -2.42 10.80 -40.01 -0.43 -2.85 16 22 C 0.04 0.42 12.03 -17.36 -0.21 0.22 16 23 N -0.29 -3.60 12.34 30.62 0.38 -3.23 16 24 C 0.06 0.85 5.43 -3.83 -0.02 0.83 16 25 C -0.10 -1.86 5.15 -26.65 -0.14 -2.00 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.41 8.00 -51.94 -0.42 -0.01 16 35 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 36 H 0.37 2.92 9.05 45.56 0.41 3.33 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.43 8.07 -51.93 -0.42 0.01 16 39 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.18 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.45 7.05 -51.93 -0.37 1.08 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -34.32 361.95 -9.07 -43.39 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.88 Total: 0.65 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -2.00 Total: -17.43 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.15 Total: -42.00 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.46 Total: -6.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.32 -9.07 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566173300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.648 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds