Wall clock time and date at job start Tue Mar 31 2020 07:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99866 * 2 1 4 4 H 1.48501 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47032 * 299.99946 * 3 2 1 6 6 H 1.48493 * 109.47149 * 60.00288 * 3 2 1 7 7 C 1.37877 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99702 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00441 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47419 * 180.02562 * 9 7 2 11 11 C 1.53122 * 109.52301 * 174.99976 * 10 9 7 12 12 C 1.53033 * 109.27983 * 177.55679 * 11 10 9 13 13 N 1.46846 * 109.52457 * 300.82412 * 12 11 10 14 14 C 1.46900 * 110.99748 * 185.83241 * 13 12 11 15 15 C 1.53011 * 109.46780 * 75.85599 * 14 13 12 16 16 H 1.09005 * 109.46603 * 300.48213 * 15 14 13 17 17 O 1.42901 * 109.47169 * 60.48378 * 15 14 13 18 18 C 1.52997 * 109.47009 * 180.48927 * 15 14 13 19 19 N 1.46501 * 109.47188 * 174.99565 * 18 15 14 20 20 C 1.34947 * 126.03699 * 124.94416 * 19 18 15 21 21 C 1.35318 * 107.74667 * 180.02562 * 20 19 18 22 22 C 1.39871 * 107.91900 * 0.02562 * 21 20 19 23 23 N 1.30843 * 108.20323 * 359.97438 * 22 21 20 24 24 C 1.46852 * 111.19950 * 61.73974 * 13 12 11 25 25 C 1.53036 * 109.52215 * 298.25876 * 24 13 12 26 26 H 0.96993 * 120.00239 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46847 * 59.99685 * 9 7 2 28 28 H 1.08996 * 109.46708 * 300.00443 * 9 7 2 29 29 H 1.09000 * 109.52003 * 54.87446 * 10 9 7 30 30 H 1.09010 * 109.50114 * 57.61916 * 11 10 9 31 31 H 1.08998 * 109.53393 * 297.52490 * 11 10 9 32 32 H 1.08996 * 109.46410 * 180.80129 * 12 11 10 33 33 H 1.09005 * 109.45162 * 60.83231 * 12 11 10 34 34 H 1.08988 * 109.47678 * 315.85243 * 14 13 12 35 35 H 1.09003 * 109.47030 * 195.84519 * 14 13 12 36 36 H 0.96698 * 113.99736 * 60.00730 * 17 15 14 37 37 H 1.09003 * 109.47331 * 54.99701 * 18 15 14 38 38 H 1.09001 * 109.47240 * 294.99613 * 18 15 14 39 39 H 1.08001 * 126.12453 * 0.05153 * 20 19 18 40 40 H 1.07998 * 126.03912 * 180.26399 * 21 20 19 41 41 H 1.07994 * 125.89869 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.45799 * 58.27352 * 24 13 12 43 43 H 1.08997 * 109.46237 * 178.24323 * 24 13 12 44 44 H 1.09000 * 109.50076 * 299.24072 * 25 24 13 45 45 H 1.08996 * 109.53698 * 179.13815 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4851 -4.9853 0.1253 12 6 2.4793 -6.1471 0.0634 13 7 3.2097 -6.1007 -1.2097 14 6 4.0738 -7.2786 -1.3640 15 6 3.2190 -8.4937 -1.7299 16 1 2.4860 -8.6724 -0.9432 17 8 2.5424 -8.2459 -2.9640 18 6 4.1174 -9.7231 -1.8787 19 7 3.2885 -10.9085 -2.1110 20 6 3.3998 -11.7643 -3.1485 21 6 2.4543 -12.7205 -2.9977 22 6 1.7403 -12.4392 -1.8284 23 7 2.2396 -11.3533 -1.2959 24 6 3.9852 -4.8596 -1.3320 25 6 3.0359 -3.6594 -1.3118 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.9313 -3.5548 0.8397 30 1 0.7706 -5.0737 -0.6933 31 1 0.9536 -5.0113 1.0765 32 1 1.9397 -7.0912 0.1384 33 1 3.1849 -6.0654 0.8902 34 1 4.5966 -7.4710 -0.4272 35 1 4.8010 -7.0946 -2.1548 36 1 3.1342 -8.0783 -3.7102 37 1 4.6998 -9.8600 -0.9676 38 1 4.7918 -9.5803 -2.7230 39 1 4.1157 -11.6980 -3.9545 40 1 2.2839 -13.5557 -3.6609 41 1 0.9193 -13.0186 -1.4328 42 1 4.6837 -4.7842 -0.4986 43 1 4.5393 -4.8686 -2.2706 44 1 2.3459 -3.7270 -2.1529 45 1 3.6124 -2.7374 -1.3873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566173300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:34 Heat of formation + Delta-G solvation = -6.803319 kcal Electronic energy + Delta-G solvation = -23470.131582 eV Core-core repulsion = 20101.661880 eV Total energy + Delta-G solvation = -3368.469702 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96339 -40.29231 -38.40803 -35.94780 -34.26826 -34.01789 -31.76877 -31.27345 -30.67507 -29.15192 -26.73410 -25.20603 -24.02701 -22.99044 -22.10095 -21.77789 -21.48691 -20.44861 -18.48872 -18.40444 -17.17117 -16.97546 -16.67130 -16.40152 -16.13189 -15.69374 -15.18087 -15.03132 -14.89206 -14.74935 -14.40974 -14.33807 -13.91891 -13.68456 -13.60350 -13.28136 -13.05711 -12.90601 -12.68889 -12.55557 -12.47749 -12.18707 -12.07433 -12.05026 -11.62238 -11.46292 -11.30311 -11.17924 -10.89909 -10.69050 -10.53828 -10.25380 -9.42101 -9.14748 -8.17867 -6.28089 1.07090 1.39079 1.39449 1.52506 1.68488 2.02422 2.41180 2.84474 3.15110 3.44948 3.63646 3.90643 3.94534 3.99778 4.08814 4.10703 4.16165 4.20301 4.35201 4.40396 4.46893 4.54351 4.63478 4.65595 4.73819 4.76773 4.84144 4.90862 4.95729 5.03134 5.10264 5.15963 5.21190 5.35851 5.40250 5.46095 5.56284 5.79856 5.80457 5.88084 6.15738 6.19078 6.26107 6.30373 6.83299 6.88476 6.95842 7.40462 8.94566 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041442 B = 0.002564 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.481786 B =10918.334641 C =11198.492598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.073 4.073 11 C -0.107 4.107 12 C 0.069 3.931 13 N -0.540 5.540 14 C 0.028 3.972 15 C 0.112 3.888 16 H 0.075 0.925 17 O -0.562 6.562 18 C 0.101 3.899 19 N -0.370 5.370 20 C 0.057 3.943 21 C -0.292 4.292 22 C 0.027 3.973 23 N -0.343 5.343 24 C 0.069 3.931 25 C -0.095 4.095 26 H 0.262 0.738 27 H -0.016 1.016 28 H -0.018 1.018 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.383 0.617 37 H 0.101 0.899 38 H 0.139 0.861 39 H 0.209 0.791 40 H 0.164 0.836 41 H 0.195 0.805 42 H 0.035 0.965 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.868 -24.596 -7.326 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.565 4.565 8 H 0.081 0.919 9 C -0.004 4.004 10 C -0.092 4.092 11 C -0.145 4.145 12 C -0.059 4.059 13 N -0.264 5.264 14 C -0.100 4.100 15 C 0.051 3.949 16 H 0.093 0.907 17 O -0.368 6.368 18 C -0.021 4.021 19 N -0.153 5.153 20 C -0.090 4.090 21 C -0.322 4.322 22 C -0.158 4.158 23 N -0.165 5.165 24 C -0.059 4.059 25 C -0.133 4.133 26 H 0.070 0.930 27 H 0.003 0.997 28 H 0.001 0.999 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.232 0.768 37 H 0.119 0.881 38 H 0.157 0.843 39 H 0.226 0.774 40 H 0.182 0.818 41 H 0.212 0.788 42 H 0.053 0.947 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.894 -23.621 -6.337 27.647 hybrid contribution 0.565 0.692 -0.030 0.894 sum 13.459 -22.929 -6.368 27.339 Atomic orbital electron populations 1.70126 1.07936 1.27519 1.52273 1.26023 0.95724 1.03452 0.95094 0.85409 0.79215 0.78875 0.77616 1.18263 1.20533 1.20634 1.21668 0.93435 0.91921 1.49443 0.91874 1.19016 0.94057 0.93350 0.94010 1.21070 0.96875 0.93818 0.97391 1.21578 0.97919 0.94390 1.00628 1.21976 0.95993 0.98013 0.89873 1.61706 1.28613 1.02106 1.34010 1.22776 0.94657 0.89927 1.02647 1.22026 0.94232 0.91251 0.87401 0.90703 1.86705 1.38046 1.93329 1.18761 1.22647 0.91785 0.81384 1.06261 1.48724 1.26208 1.21694 1.18629 1.23197 1.01203 0.91104 0.93450 1.21850 1.02239 1.05657 1.02417 1.24321 1.00747 0.94742 0.95996 1.77283 1.03795 1.15690 1.19743 1.22076 0.94089 0.88391 1.01306 1.21418 0.97906 0.97231 0.96715 0.92966 0.99726 0.99935 0.93177 0.93433 0.92531 0.91030 0.94534 0.92561 0.87574 0.76813 0.88077 0.84301 0.77405 0.81795 0.78785 0.94706 0.88970 0.93679 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.80 13.29 21.45 0.28 -58.52 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.53 -30.28 8.45 25.60 0.22 -30.06 16 8 H 0.06 3.45 7.08 -2.91 -0.02 3.43 16 9 C 0.03 1.79 4.45 29.85 0.13 1.93 16 10 C -0.07 -3.09 2.20 -10.71 -0.02 -3.12 16 11 C -0.11 -4.01 5.38 30.65 0.16 -3.84 16 12 C 0.07 2.03 5.29 86.32 0.46 2.49 16 13 N -0.54 -14.07 4.46 -896.35 -4.00 -18.06 16 14 C 0.03 0.47 4.67 86.31 0.40 0.88 16 15 C 0.11 2.03 3.15 30.60 0.10 2.13 16 16 H 0.07 1.93 6.74 -2.38 -0.02 1.91 16 17 O -0.56 -12.33 13.16 -148.98 -1.96 -14.29 16 18 C 0.10 1.19 6.15 86.38 0.53 1.72 16 19 N -0.37 -6.70 3.63 -348.06 -1.26 -7.96 16 20 C 0.06 0.78 11.45 83.54 0.96 1.74 16 21 C -0.29 -4.62 10.80 21.99 0.24 -4.38 16 22 C 0.03 0.54 12.03 85.24 1.03 1.57 16 23 N -0.34 -8.44 12.34 -57.02 -0.70 -9.15 16 24 C 0.07 1.86 5.43 86.32 0.47 2.33 16 25 C -0.09 -3.55 5.15 30.65 0.16 -3.39 16 26 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.04 6.72 -2.39 -0.02 2.02 16 33 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.06 0.84 8.00 -2.39 -0.02 0.82 16 35 H 0.11 1.16 7.79 -2.39 -0.02 1.15 16 36 H 0.38 4.98 9.05 -74.06 -0.67 4.31 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.14 0.49 8.07 -2.39 -0.02 0.47 16 39 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.20 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.09 2.03 7.93 -2.39 -0.02 2.01 16 44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.06 2.35 7.05 -2.39 -0.02 2.34 16 Total: -1.00 -78.32 361.95 -0.04 -78.36 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.29 Total: 12.57 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 5.28 Total: -29.90 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -5.68 Total: -93.69 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.96 Total: -14.29 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -78.32 -0.04 -78.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566173300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.552 kcal (2) G-P(sol) polarization free energy of solvation -78.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds