Wall clock time and date at job start Tue Mar 31 2020 07:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.41756 * 179.97438 * 6 5 4 8 8 N 1.46894 * 109.47149 * 270.01646 * 7 6 5 9 9 C 1.46903 * 111.00103 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47239 * 180.02562 * 9 8 7 11 11 H 1.08988 * 109.46996 * 60.00222 * 10 9 8 12 12 O 1.42899 * 109.46782 * 299.99807 * 10 9 8 13 13 C 1.53006 * 109.47007 * 180.02562 * 10 9 8 14 14 N 1.46901 * 109.46636 * 185.00020 * 13 10 9 15 15 C 1.46893 * 111.00236 * 66.04703 * 14 13 10 16 16 C 1.46908 * 110.99593 * 189.99744 * 14 13 10 17 17 C 1.50695 * 109.47045 * 169.99862 * 16 14 13 18 18 H 1.08005 * 119.99856 * 0.02562 * 17 16 14 19 19 C 1.37870 * 120.00208 * 180.02562 * 17 16 14 20 20 N 1.31516 * 119.99775 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00434 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46631 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47366 * 119.99926 * 21 19 17 24 24 H 1.48501 * 109.47019 * 239.99853 * 21 19 17 25 25 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 27 27 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 28 28 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 29 29 H 1.07994 * 119.62230 * 359.95780 * 3 2 1 30 30 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47215 * 30.02243 * 7 6 5 32 32 H 1.09007 * 109.47041 * 150.01600 * 7 6 5 33 33 H 1.00902 * 111.00569 * 303.95416 * 8 7 6 34 34 H 1.09001 * 109.47305 * 300.00517 * 9 8 7 35 35 H 1.09005 * 109.46779 * 60.00313 * 9 8 7 36 36 H 0.96699 * 114.00712 * 300.00242 * 12 10 9 37 37 H 1.09001 * 109.46625 * 304.99912 * 13 10 9 38 38 H 1.08998 * 109.47045 * 64.99858 * 13 10 9 39 39 H 1.09001 * 109.47421 * 59.99230 * 15 14 13 40 40 H 1.08997 * 109.47496 * 180.02562 * 15 14 13 41 41 H 1.09003 * 109.47196 * 299.99885 * 15 14 13 42 42 H 1.08996 * 109.46912 * 290.00148 * 16 14 13 43 43 H 1.09007 * 109.46608 * 49.99866 * 16 14 13 44 44 H 0.97006 * 120.00260 * 179.97438 * 20 19 17 45 45 H 1.08003 * 120.79539 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4193 -0.0011 8 7 4.6660 -2.8315 -1.3862 9 6 5.4538 -4.0708 -1.4259 10 6 5.7079 -4.4672 -2.8817 11 1 6.2572 -3.6713 -3.3843 12 8 4.4587 -4.6754 -3.5436 13 6 6.5279 -5.7583 -2.9230 14 7 6.8738 -6.0742 -4.3154 15 6 7.7830 -5.0648 -4.8740 16 6 7.4525 -7.4203 -4.4215 17 6 7.5663 -7.8050 -5.8741 18 1 7.2416 -7.1181 -6.6417 19 6 8.0849 -9.0338 -6.2233 20 7 8.4808 -9.8701 -5.2886 21 14 8.2267 -9.5104 -8.0239 22 1 7.7168 -8.4023 -8.8708 23 1 9.6500 -9.7733 -8.3558 24 1 7.4252 -10.7349 -8.2764 25 6 2.2089 -1.1955 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6676 2.1275 -0.0007 30 1 5.3047 0.1285 0.0005 31 1 5.3484 -2.2493 0.5136 32 1 3.8458 -3.2036 0.5118 33 1 3.8055 -2.9330 -1.9032 34 1 6.4068 -3.9119 -0.9213 35 1 4.9046 -4.8667 -0.9228 36 1 3.9156 -5.3714 -3.1490 37 1 7.4410 -5.6274 -2.3425 38 1 5.9421 -6.5744 -2.5000 39 1 8.6992 -5.0349 -4.2843 40 1 8.0225 -5.3226 -5.9056 41 1 7.3015 -4.0872 -4.8467 42 1 8.4423 -7.4272 -3.9652 43 1 6.8097 -8.1338 -3.9059 44 1 8.8453 -10.7348 -5.5341 45 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566732631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:28 Heat of formation + Delta-G solvation = -17.958117 kcal Electronic energy + Delta-G solvation = -22607.959407 eV Core-core repulsion = 19239.005996 eV Total energy + Delta-G solvation = -3368.953410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58177 -38.39005 -36.28605 -35.21987 -33.90252 -32.59491 -32.40884 -29.69022 -27.66163 -27.24041 -26.60055 -25.05608 -23.48837 -22.97941 -21.51889 -21.11000 -20.16888 -17.31797 -17.07365 -16.62395 -16.25768 -16.00372 -15.26838 -15.01673 -14.81529 -14.47372 -14.35800 -14.13777 -13.76088 -13.44420 -13.36345 -13.28727 -12.98837 -12.87155 -12.77786 -12.47318 -12.01076 -11.88738 -11.59137 -11.33727 -11.12116 -10.88269 -10.76562 -10.66609 -10.29754 -10.05572 -9.97914 -9.74581 -9.60954 -9.16724 -9.08093 -8.61526 -8.44054 -7.19762 -6.02909 -4.03699 0.79034 0.97406 3.31464 3.38735 3.42940 3.44779 3.96863 4.18629 4.39252 4.42449 4.45286 4.63414 4.66310 4.69023 4.78573 4.89170 5.04043 5.16222 5.18031 5.24573 5.29142 5.34641 5.37447 5.48979 5.50878 5.62710 5.64168 5.71471 5.89046 5.94662 6.05216 6.20258 6.32676 6.40110 6.41924 6.73681 6.79132 7.17487 7.26772 7.32691 7.70896 7.80576 7.93223 8.09632 8.20428 8.55515 9.04752 9.60597 11.08099 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.002200 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.298190 B =12723.994495 C =12871.877212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.139 4.139 3 C 0.095 3.905 4 N -0.483 5.483 5 C 0.113 3.887 6 C -0.127 4.127 7 C 0.101 3.899 8 N -0.679 5.679 9 C 0.027 3.973 10 C 0.114 3.886 11 H 0.105 0.895 12 O -0.546 6.546 13 C 0.025 3.975 14 N -0.530 5.530 15 C 0.035 3.965 16 C 0.192 3.808 17 C -0.504 4.504 18 H 0.065 0.935 19 C 0.053 3.947 20 N -0.900 5.900 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.072 4.072 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.349 0.651 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.366 0.634 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.009 0.991 40 H 0.075 0.925 41 H 0.048 0.952 42 H -0.011 1.011 43 H 0.028 0.972 44 H 0.260 0.740 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 17.786 14.487 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C -0.063 4.063 4 N -0.190 5.190 5 C -0.044 4.044 6 C -0.129 4.129 7 C -0.028 4.028 8 N -0.311 5.311 9 C -0.103 4.103 10 C 0.054 3.946 11 H 0.122 0.878 12 O -0.350 6.350 13 C -0.104 4.104 14 N -0.254 5.254 15 C -0.113 4.113 16 C 0.067 3.933 17 C -0.543 4.543 18 H 0.083 0.917 19 C -0.148 4.148 20 N -0.540 5.540 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.098 4.098 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.173 0.827 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.168 0.832 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.212 0.788 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.007 0.993 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.450 19.295 13.775 26.778 hybrid contribution -0.304 -2.431 0.275 2.466 sum -12.754 16.864 14.051 25.386 Atomic orbital electron populations 1.20726 0.90182 1.03061 1.02771 1.20917 0.97600 0.94121 1.01448 1.22674 0.90056 0.97432 0.96116 1.67714 1.08301 1.31312 1.11686 1.22665 1.00391 0.86909 0.94458 1.20805 0.94141 0.96750 1.01207 1.20811 0.98777 0.92390 0.90839 1.60399 1.25419 1.33605 1.11723 1.22721 0.98743 0.90125 0.98677 1.22008 0.85414 0.97198 0.90006 0.87758 1.86620 1.30335 1.59237 1.58765 1.22708 0.98471 0.96897 0.92359 1.62029 1.44380 1.04632 1.14406 1.22264 0.93261 0.94583 1.01198 1.19748 0.92649 0.83202 0.97676 1.21211 1.40147 1.00923 0.91974 0.91722 1.25005 0.95622 0.96446 0.97726 1.69972 1.43076 1.08642 1.32357 0.86429 0.77525 0.78472 0.84944 1.19600 1.21139 1.21027 1.21413 0.93482 0.98261 0.96684 0.90741 0.91358 0.91175 0.82994 0.82674 0.89786 0.94231 0.83152 0.90132 0.94872 0.78834 0.95286 0.91321 0.97271 0.90672 0.93359 0.99286 0.95434 0.93026 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.04 36.01 0.36 -0.20 16 2 C -0.14 -1.09 5.90 -104.48 -0.62 -1.71 16 3 C 0.09 0.84 10.86 -17.55 -0.19 0.65 16 4 N -0.48 -5.30 10.36 -13.26 -0.14 -5.44 16 5 C 0.11 1.14 10.86 -17.55 -0.19 0.95 16 6 C -0.13 -1.15 5.41 -104.48 -0.57 -1.71 16 7 C 0.10 0.86 5.84 -4.98 -0.03 0.83 16 8 N -0.68 -7.01 6.49 -115.05 -0.75 -7.75 16 9 C 0.03 0.29 5.39 -3.82 -0.02 0.27 16 10 C 0.11 1.60 3.20 -26.73 -0.09 1.51 16 11 H 0.10 1.61 6.34 -51.94 -0.33 1.28 16 12 O -0.55 -8.10 12.62 -35.23 -0.44 -8.55 16 13 C 0.03 0.43 4.59 -3.82 -0.02 0.42 16 14 N -0.53 -11.52 4.70 -244.37 -1.15 -12.67 16 15 C 0.04 0.71 9.14 60.06 0.55 1.26 16 16 C 0.19 5.04 4.72 -4.97 -0.02 5.02 16 17 C -0.50 -14.33 8.46 -34.45 -0.29 -14.62 16 18 H 0.06 1.84 7.12 -52.48 -0.37 1.47 16 19 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 21 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.07 -0.59 9.54 -39.28 -0.37 -0.97 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 28 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.04 0.30 8.10 -51.92 -0.42 -0.12 16 33 H 0.35 3.72 8.12 -39.29 -0.32 3.40 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.37 4.30 9.05 45.56 0.41 4.71 16 37 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 38 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 41 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 42 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 43 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -32.63 371.02 -9.50 -42.13 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.73 Total: 2.88 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.59 Total: -6.88 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -1.30 Total: -52.00 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.44 Total: -8.55 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.63 -9.50 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566732631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.170 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds