Wall clock time and date at job start Tue Mar 31 2020 07:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.41756 * 179.97438 * 6 5 4 8 8 N 1.46894 * 109.47149 * 270.01646 * 7 6 5 9 9 C 1.46903 * 111.00103 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47239 * 180.02562 * 9 8 7 11 11 H 1.08988 * 109.46996 * 60.00222 * 10 9 8 12 12 O 1.42899 * 109.46782 * 299.99807 * 10 9 8 13 13 C 1.53006 * 109.47007 * 180.02562 * 10 9 8 14 14 N 1.46901 * 109.46636 * 185.00020 * 13 10 9 15 15 C 1.46893 * 111.00236 * 66.04703 * 14 13 10 16 16 C 1.46908 * 110.99593 * 189.99744 * 14 13 10 17 17 C 1.50695 * 109.47045 * 169.99862 * 16 14 13 18 18 H 1.08005 * 119.99856 * 0.02562 * 17 16 14 19 19 C 1.37870 * 120.00208 * 180.02562 * 17 16 14 20 20 N 1.31516 * 119.99775 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00434 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46631 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47366 * 119.99926 * 21 19 17 24 24 H 1.48501 * 109.47019 * 239.99853 * 21 19 17 25 25 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 27 27 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 28 28 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 29 29 H 1.07994 * 119.62230 * 359.95780 * 3 2 1 30 30 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47215 * 30.02243 * 7 6 5 32 32 H 1.09007 * 109.47041 * 150.01600 * 7 6 5 33 33 H 1.00902 * 111.00569 * 303.95416 * 8 7 6 34 34 H 1.09001 * 109.47305 * 300.00517 * 9 8 7 35 35 H 1.09005 * 109.46779 * 60.00313 * 9 8 7 36 36 H 0.96699 * 114.00712 * 300.00242 * 12 10 9 37 37 H 1.09001 * 109.46625 * 304.99912 * 13 10 9 38 38 H 1.08998 * 109.47045 * 64.99858 * 13 10 9 39 39 H 1.09001 * 109.47421 * 59.99230 * 15 14 13 40 40 H 1.08997 * 109.47496 * 180.02562 * 15 14 13 41 41 H 1.09003 * 109.47196 * 299.99885 * 15 14 13 42 42 H 1.08996 * 109.46912 * 290.00148 * 16 14 13 43 43 H 1.09007 * 109.46608 * 49.99866 * 16 14 13 44 44 H 0.97006 * 120.00260 * 179.97438 * 20 19 17 45 45 H 1.08003 * 120.79539 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4193 -0.0011 8 7 4.6660 -2.8315 -1.3862 9 6 5.4538 -4.0708 -1.4259 10 6 5.7079 -4.4672 -2.8817 11 1 6.2572 -3.6713 -3.3843 12 8 4.4587 -4.6754 -3.5436 13 6 6.5279 -5.7583 -2.9230 14 7 6.8738 -6.0742 -4.3154 15 6 7.7830 -5.0648 -4.8740 16 6 7.4525 -7.4203 -4.4215 17 6 7.5663 -7.8050 -5.8741 18 1 7.2416 -7.1181 -6.6417 19 6 8.0849 -9.0338 -6.2233 20 7 8.4808 -9.8701 -5.2886 21 14 8.2267 -9.5104 -8.0239 22 1 7.7168 -8.4023 -8.8708 23 1 9.6500 -9.7733 -8.3558 24 1 7.4252 -10.7349 -8.2764 25 6 2.2089 -1.1955 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6676 2.1275 -0.0007 30 1 5.3047 0.1285 0.0005 31 1 5.3484 -2.2493 0.5136 32 1 3.8458 -3.2036 0.5118 33 1 3.8055 -2.9330 -1.9032 34 1 6.4068 -3.9119 -0.9213 35 1 4.9046 -4.8667 -0.9228 36 1 3.9156 -5.3714 -3.1490 37 1 7.4410 -5.6274 -2.3425 38 1 5.9421 -6.5744 -2.5000 39 1 8.6992 -5.0349 -4.2843 40 1 8.0225 -5.3226 -5.9056 41 1 7.3015 -4.0872 -4.8467 42 1 8.4423 -7.4272 -3.9652 43 1 6.8097 -8.1338 -3.9059 44 1 8.8453 -10.7348 -5.5341 45 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566732631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:27 Heat of formation + Delta-G solvation = -43.572368 kcal Electronic energy + Delta-G solvation = -22609.070124 eV Core-core repulsion = 19239.005996 eV Total energy + Delta-G solvation = -3370.064128 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22860 -39.61385 -37.57972 -36.36191 -34.62791 -34.48382 -33.26279 -30.96316 -29.07929 -28.16931 -27.83248 -26.38459 -24.70864 -23.83377 -22.64579 -22.04812 -21.66417 -18.58106 -17.99118 -17.76480 -17.38281 -17.17328 -16.69399 -16.29984 -15.96225 -15.65162 -15.57325 -15.06803 -14.92492 -14.71035 -14.26591 -14.00030 -13.96369 -13.80932 -13.56891 -13.45110 -13.25788 -13.17785 -12.97020 -12.71059 -12.57760 -12.51140 -12.38348 -12.18606 -12.01289 -11.62898 -11.40254 -10.80931 -10.63134 -10.59570 -10.38144 -9.76884 -9.37436 -8.96435 -8.21626 -6.31232 0.13965 0.33151 1.40342 1.40965 1.55007 2.39716 2.72382 3.06229 3.11134 3.46263 3.57950 3.68989 3.80650 3.84791 4.02460 4.06528 4.07484 4.13317 4.26752 4.30029 4.41686 4.52447 4.56588 4.68305 4.69915 4.73218 4.80271 4.81578 4.84051 4.93513 5.06138 5.15913 5.17428 5.20775 5.29527 5.32067 5.33857 5.64488 5.79641 5.96135 6.05177 6.31549 6.38213 6.63652 6.85033 6.96222 7.03986 7.38485 8.89457 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.002200 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.298190 B =12723.994495 C =12871.877212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.138 4.138 3 C 0.080 3.920 4 N -0.512 5.512 5 C 0.093 3.907 6 C -0.131 4.131 7 C 0.106 3.894 8 N -0.687 5.687 9 C 0.040 3.960 10 C 0.127 3.873 11 H 0.092 0.908 12 O -0.561 6.561 13 C 0.025 3.975 14 N -0.542 5.542 15 C 0.040 3.960 16 C 0.207 3.793 17 C -0.522 4.522 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.277 1.277 25 C -0.079 4.079 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.348 0.652 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.379 0.621 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.012 0.988 40 H 0.054 0.946 41 H 0.075 0.925 42 H -0.039 1.039 43 H 0.005 0.995 44 H 0.264 0.736 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 18.285 14.522 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.140 4.140 3 C -0.077 4.077 4 N -0.220 5.220 5 C -0.064 4.064 6 C -0.133 4.133 7 C -0.023 4.023 8 N -0.319 5.319 9 C -0.090 4.090 10 C 0.068 3.932 11 H 0.110 0.890 12 O -0.367 6.367 13 C -0.104 4.104 14 N -0.265 5.265 15 C -0.109 4.109 16 C 0.081 3.919 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.105 4.105 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.188 0.812 30 H 0.176 0.824 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.167 0.833 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.227 0.773 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.093 0.907 42 H -0.021 1.021 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.799 19.811 13.829 27.823 hybrid contribution 0.058 -2.537 0.320 2.558 sum -13.741 17.273 14.148 26.218 Atomic orbital electron populations 1.20781 0.88123 1.04214 1.03394 1.21233 0.99093 0.93595 1.00103 1.23084 0.89699 0.98860 0.96067 1.67686 1.09490 1.32036 1.12763 1.22819 1.00780 0.87360 0.95406 1.20862 0.94689 0.96490 1.01245 1.20800 0.99211 0.92404 0.89836 1.60356 1.25428 1.33197 1.12962 1.22513 0.99479 0.90884 0.96155 1.21797 0.84607 0.94802 0.92039 0.89019 1.86581 1.30563 1.59954 1.59608 1.22832 0.99192 0.98728 0.89689 1.61941 1.44043 1.02929 1.17637 1.22228 0.93539 0.95219 0.99872 1.19399 0.90810 0.85463 0.96209 1.21496 1.40375 1.01243 0.92935 0.92181 1.25916 0.95037 0.96344 1.02492 1.70085 1.43644 1.09119 1.34643 0.85328 0.77807 0.78253 0.79196 1.18946 1.20343 1.20260 1.21713 0.93325 0.99271 0.96183 0.90225 0.90394 0.89908 0.81176 0.82421 0.89324 0.92903 0.83346 0.89535 0.93468 0.77281 0.94789 0.91195 0.96954 0.92714 0.90661 1.02099 0.97678 0.92672 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.04 71.24 0.72 -0.13 16 2 C -0.14 -1.95 5.90 -19.77 -0.12 -2.06 16 3 C 0.08 1.35 10.86 84.68 0.92 2.27 16 4 N -0.51 -11.12 10.36 -195.85 -2.03 -13.15 16 5 C 0.09 1.85 10.86 84.67 0.92 2.77 16 6 C -0.13 -2.21 5.41 -19.77 -0.11 -2.31 16 7 C 0.11 1.60 5.84 85.56 0.50 2.10 16 8 N -0.69 -12.87 6.49 -517.92 -3.36 -16.23 16 9 C 0.04 0.77 5.39 86.30 0.47 1.24 16 10 C 0.13 3.39 3.20 30.60 0.10 3.49 16 11 H 0.09 2.70 6.34 -2.39 -0.02 2.69 16 12 O -0.56 -15.81 12.62 -148.98 -1.88 -17.69 16 13 C 0.02 0.83 4.59 86.31 0.40 1.22 16 14 N -0.54 -23.59 4.70 -927.04 -4.36 -27.95 16 15 C 0.04 1.58 9.14 127.69 1.17 2.75 16 16 C 0.21 11.16 4.72 85.55 0.40 11.56 16 17 C -0.52 -30.13 8.46 25.60 0.22 -29.91 16 18 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.93 -56.42 13.29 21.44 0.28 -56.13 16 21 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 C -0.08 -1.15 9.54 22.47 0.21 -0.94 16 26 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.08 0.48 8.10 -2.39 -0.02 0.46 16 28 H 0.08 0.45 8.09 -2.39 -0.02 0.43 16 29 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.09 1.25 8.09 -2.38 -0.02 1.23 16 32 H 0.05 0.67 8.10 -2.38 -0.02 0.65 16 33 H 0.35 6.74 8.12 -89.69 -0.73 6.01 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.38 8.28 9.05 -74.06 -0.67 7.61 16 37 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 38 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.05 2.38 6.76 -2.39 -0.02 2.36 16 41 H 0.07 2.57 6.37 -2.39 -0.02 2.56 16 42 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 43 H 0.01 0.29 7.93 -2.38 -0.02 0.27 16 44 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 45 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -70.30 371.02 -3.48 -73.78 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.42 Total: 18.01 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 6.25 Total: -7.49 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -9.46 Total: -113.47 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -1.88 Total: -17.69 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -70.30 -3.48 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566732631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.209 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds