Wall clock time and date at job start Tue Mar 31 2020 07:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38221 * 120.42213 * 2 1 4 4 N 1.31861 * 120.76536 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72133 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76750 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.41663 * 180.27133 * 6 5 4 8 8 N 1.46900 * 109.47138 * 269.72235 * 7 6 5 9 9 C 1.46899 * 110.99912 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47005 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47141 * 305.00020 * 10 9 8 12 12 O 1.42898 * 109.47485 * 64.99932 * 10 9 8 13 13 C 1.53007 * 109.46983 * 185.00080 * 10 9 8 14 14 N 1.46897 * 109.46844 * 180.02562 * 13 10 9 15 15 C 1.46902 * 110.99940 * 293.95224 * 14 13 10 16 16 C 1.46896 * 111.00120 * 170.00005 * 14 13 10 17 17 C 1.50698 * 109.47600 * 189.99857 * 16 14 13 18 18 H 1.07994 * 119.99885 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00388 * 179.97438 * 17 16 14 20 20 N 1.31508 * 120.00569 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99747 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47211 * 90.00117 * 21 19 17 23 23 H 1.48503 * 109.46905 * 210.00056 * 21 19 17 24 24 H 1.48502 * 109.47008 * 329.99765 * 21 19 17 25 25 C 1.38629 * 120.41551 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46565 * 270.01978 * 1 2 3 27 27 H 1.08996 * 109.47158 * 30.01160 * 1 2 3 28 28 H 1.08991 * 109.47818 * 150.01679 * 1 2 3 29 29 H 1.07992 * 119.62125 * 359.96565 * 3 2 1 30 30 H 1.08003 * 119.61498 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.47292 * 29.72288 * 7 6 5 32 32 H 1.09002 * 109.46937 * 149.72774 * 7 6 5 33 33 H 1.00900 * 111.00339 * 303.95684 * 8 7 6 34 34 H 1.09002 * 109.47094 * 299.99671 * 9 8 7 35 35 H 1.08995 * 109.47028 * 60.00529 * 9 8 7 36 36 H 0.96703 * 113.99478 * 59.99817 * 12 10 9 37 37 H 1.08997 * 109.47241 * 299.99469 * 13 10 9 38 38 H 1.08997 * 109.47094 * 59.99800 * 13 10 9 39 39 H 1.08999 * 109.47370 * 60.00456 * 15 14 13 40 40 H 1.09000 * 109.47215 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.47183 * 299.99732 * 15 14 13 42 42 H 1.08997 * 109.46899 * 310.00126 * 16 14 13 43 43 H 1.09005 * 109.46982 * 69.99353 * 16 14 13 44 44 H 0.96995 * 120.00392 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.79273 * 0.03913 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0005 5 6 4.2256 0.0821 0.0005 6 6 3.5947 -1.1472 -0.0005 7 6 4.4026 -2.4194 0.0057 8 7 4.6663 -2.8387 -1.3773 9 6 5.4530 -4.0789 -1.4104 10 6 5.7075 -4.4827 -2.8641 11 1 4.7569 -4.5567 -3.3924 12 8 6.5278 -3.4977 -3.4955 13 6 6.4179 -5.8374 -2.9002 14 7 6.6627 -6.2247 -4.2959 15 6 5.3992 -6.4738 -5.0025 16 6 7.5469 -7.3955 -4.3699 17 6 7.9724 -7.6142 -5.7989 18 1 7.6209 -6.9501 -6.5746 19 6 8.8106 -8.6620 -6.1160 20 7 9.1815 -8.8532 -7.3631 21 14 9.4181 -9.8110 -4.7743 22 1 8.4680 -10.9423 -4.6237 23 1 10.7581 -10.3355 -5.1411 24 1 9.5113 -9.0687 -3.4916 25 6 2.2088 -1.1955 0.0005 26 1 -0.3632 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5140 28 1 -0.3634 -0.8900 -0.5135 29 1 1.6676 2.1276 -0.0006 30 1 5.3047 0.1283 0.0014 31 1 5.3482 -2.2469 0.5196 32 1 3.8455 -3.2010 0.5223 33 1 3.8059 -2.9428 -1.8940 34 1 6.4059 -3.9182 -0.9062 35 1 4.9028 -4.8717 -0.9038 36 1 7.3914 -3.3782 -3.0771 37 1 7.3684 -5.7633 -2.3720 38 1 5.7921 -6.5887 -2.4186 39 1 4.7926 -5.5682 -4.9925 40 1 5.6095 -6.7592 -6.0333 41 1 4.8579 -7.2792 -4.5061 42 1 8.4275 -7.2254 -3.7505 43 1 7.0145 -8.2761 -4.0104 44 1 9.7715 -9.5901 -7.5862 45 1 1.6886 -2.1420 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566732632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:29 Heat of formation + Delta-G solvation = -11.284062 kcal Electronic energy + Delta-G solvation = -22646.034084 eV Core-core repulsion = 19277.370082 eV Total energy + Delta-G solvation = -3368.664002 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60506 -38.39209 -36.39859 -35.24782 -33.92772 -32.59404 -32.40608 -29.80397 -27.83993 -27.65898 -26.68987 -25.05807 -23.47635 -22.96254 -21.57825 -21.01717 -20.11854 -17.33562 -17.09655 -16.93730 -16.44946 -15.86165 -15.39570 -15.04215 -14.70264 -14.60046 -14.40660 -14.18083 -13.81039 -13.67974 -13.39429 -13.17734 -13.05792 -12.85354 -12.78564 -12.59175 -12.32165 -11.97369 -11.63832 -11.58179 -11.28118 -11.00094 -10.74432 -10.70206 -10.27721 -10.02763 -9.91554 -9.75896 -9.53238 -9.24143 -9.13692 -8.63234 -8.58170 -7.35662 -6.04837 -4.02046 0.76829 0.94765 3.26393 3.34233 3.35391 3.40250 3.91695 4.15362 4.36067 4.40388 4.41011 4.58433 4.62633 4.67567 4.73519 4.81929 4.99907 5.05630 5.13865 5.19590 5.24495 5.28655 5.34839 5.42705 5.47698 5.51784 5.56913 5.60771 5.86260 5.91030 5.92012 6.09131 6.19157 6.28255 6.39235 6.67098 6.69078 6.82414 6.97827 7.06705 7.58658 7.69280 7.88924 7.99059 8.13211 8.66299 9.05072 9.56520 11.08355 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036790 B = 0.002268 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.891802 B =12345.222895 C =12441.452579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.140 4.140 3 C 0.095 3.905 4 N -0.482 5.482 5 C 0.115 3.885 6 C -0.127 4.127 7 C 0.102 3.898 8 N -0.673 5.673 9 C 0.026 3.974 10 C 0.118 3.882 11 H 0.092 0.908 12 O -0.533 6.533 13 C 0.021 3.979 14 N -0.519 5.519 15 C 0.035 3.965 16 C 0.162 3.838 17 C -0.508 4.508 18 H 0.082 0.918 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.876 3.124 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.268 1.268 25 C -0.073 4.073 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.342 0.658 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.369 0.631 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.008 0.992 42 H 0.027 0.973 43 H -0.019 1.019 44 H 0.263 0.737 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.016 15.082 19.291 29.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.142 4.142 3 C -0.062 4.062 4 N -0.190 5.190 5 C -0.042 4.042 6 C -0.130 4.130 7 C -0.028 4.028 8 N -0.304 5.304 9 C -0.104 4.104 10 C 0.057 3.943 11 H 0.110 0.890 12 O -0.337 6.337 13 C -0.109 4.109 14 N -0.242 5.242 15 C -0.113 4.113 16 C 0.036 3.964 17 C -0.546 4.546 18 H 0.100 0.900 19 C -0.135 4.135 20 N -0.539 5.539 21 Si 0.703 3.297 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.100 4.100 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.170 0.830 30 H 0.174 0.826 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.160 0.840 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.215 0.785 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.026 0.974 42 H 0.045 0.955 43 H -0.001 1.001 44 H 0.073 0.927 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.169 16.601 18.469 29.100 hybrid contribution -0.678 -3.080 1.739 3.601 sum -15.846 13.521 20.209 29.023 Atomic orbital electron populations 1.20721 0.90198 1.03262 1.02544 1.20913 0.97582 0.94127 1.01531 1.22686 0.90068 0.97435 0.96017 1.67726 1.08284 1.31311 1.11634 1.22675 1.00433 0.86875 0.94244 1.20794 0.94099 0.96756 1.01306 1.20820 0.98811 0.92368 0.90776 1.60412 1.24555 1.33577 1.11853 1.22771 0.98743 0.90077 0.98771 1.21829 0.94831 0.87347 0.90272 0.89009 1.86617 1.30468 1.58786 1.57814 1.22786 0.99821 0.95838 0.92436 1.61847 1.13953 1.38514 1.09906 1.22291 0.90414 0.97748 1.00873 1.20207 0.91480 0.85923 0.98821 1.21038 1.28676 1.12940 0.91930 0.90021 1.24913 0.95973 0.97339 0.95229 1.69889 1.35586 1.31122 1.17289 0.86855 0.78485 0.81459 0.82851 1.20440 1.21116 1.19314 1.21402 0.93487 0.98225 0.96837 0.90958 0.91072 0.91295 0.82977 0.82616 0.89712 0.94323 0.83990 0.90384 0.94555 0.78461 0.91100 0.95472 0.93153 0.90062 0.97373 0.95527 1.00109 0.92667 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.04 36.01 0.36 -0.17 16 2 C -0.14 -1.06 5.90 -104.48 -0.62 -1.68 16 3 C 0.10 0.83 10.86 -17.55 -0.19 0.64 16 4 N -0.48 -5.24 10.36 -13.25 -0.14 -5.38 16 5 C 0.12 1.14 10.86 -17.55 -0.19 0.95 16 6 C -0.13 -1.11 5.41 -104.48 -0.57 -1.68 16 7 C 0.10 0.82 5.84 -4.97 -0.03 0.79 16 8 N -0.67 -6.58 6.44 -115.06 -0.74 -7.32 16 9 C 0.03 0.27 5.32 -3.82 -0.02 0.25 16 10 C 0.12 1.58 3.02 -26.73 -0.08 1.50 16 11 H 0.09 1.28 6.55 -51.93 -0.34 0.94 16 12 O -0.53 -8.27 13.15 -35.23 -0.46 -8.73 16 13 C 0.02 0.34 4.62 -3.82 -0.02 0.32 16 14 N -0.52 -10.83 4.62 -244.37 -1.13 -11.96 16 15 C 0.04 0.68 9.14 60.07 0.55 1.23 16 16 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 17 C -0.51 -14.55 9.01 -34.44 -0.31 -14.86 16 18 H 0.08 2.56 7.37 -52.49 -0.39 2.18 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 21 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 25 C -0.07 -0.57 9.54 -39.28 -0.37 -0.95 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 31 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.34 3.32 8.72 -39.29 -0.34 2.98 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.37 4.73 9.05 45.56 0.41 5.14 16 37 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 38 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.05 0.86 6.47 -51.93 -0.34 0.52 16 40 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 41 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.03 0.65 6.99 -51.93 -0.36 0.29 16 43 H -0.02 -0.45 7.55 -51.93 -0.39 -0.85 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -33.44 368.51 -9.16 -42.60 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.74 Total: 3.24 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.60 Total: -7.90 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -1.23 Total: -51.60 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.46 Total: -8.73 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.44 -9.16 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566732632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.316 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds