Wall clock time and date at job start Tue Mar 31 2020 07:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38221 * 120.42213 * 2 1 4 4 N 1.31861 * 120.76536 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72133 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76750 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.41663 * 180.27133 * 6 5 4 8 8 N 1.46900 * 109.47138 * 269.72235 * 7 6 5 9 9 C 1.46899 * 110.99912 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47005 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47141 * 305.00020 * 10 9 8 12 12 O 1.42898 * 109.47485 * 64.99932 * 10 9 8 13 13 C 1.53007 * 109.46983 * 185.00080 * 10 9 8 14 14 N 1.46897 * 109.46844 * 180.02562 * 13 10 9 15 15 C 1.46902 * 110.99940 * 293.95224 * 14 13 10 16 16 C 1.46896 * 111.00120 * 170.00005 * 14 13 10 17 17 C 1.50698 * 109.47600 * 189.99857 * 16 14 13 18 18 H 1.07994 * 119.99885 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00388 * 179.97438 * 17 16 14 20 20 N 1.31508 * 120.00569 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99747 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47211 * 90.00117 * 21 19 17 23 23 H 1.48503 * 109.46905 * 210.00056 * 21 19 17 24 24 H 1.48502 * 109.47008 * 329.99765 * 21 19 17 25 25 C 1.38629 * 120.41551 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46565 * 270.01978 * 1 2 3 27 27 H 1.08996 * 109.47158 * 30.01160 * 1 2 3 28 28 H 1.08991 * 109.47818 * 150.01679 * 1 2 3 29 29 H 1.07992 * 119.62125 * 359.96565 * 3 2 1 30 30 H 1.08003 * 119.61498 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.47292 * 29.72288 * 7 6 5 32 32 H 1.09002 * 109.46937 * 149.72774 * 7 6 5 33 33 H 1.00900 * 111.00339 * 303.95684 * 8 7 6 34 34 H 1.09002 * 109.47094 * 299.99671 * 9 8 7 35 35 H 1.08995 * 109.47028 * 60.00529 * 9 8 7 36 36 H 0.96703 * 113.99478 * 59.99817 * 12 10 9 37 37 H 1.08997 * 109.47241 * 299.99469 * 13 10 9 38 38 H 1.08997 * 109.47094 * 59.99800 * 13 10 9 39 39 H 1.08999 * 109.47370 * 60.00456 * 15 14 13 40 40 H 1.09000 * 109.47215 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.47183 * 299.99732 * 15 14 13 42 42 H 1.08997 * 109.46899 * 310.00126 * 16 14 13 43 43 H 1.09005 * 109.46982 * 69.99353 * 16 14 13 44 44 H 0.96995 * 120.00392 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.79273 * 0.03913 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0005 5 6 4.2256 0.0821 0.0005 6 6 3.5947 -1.1472 -0.0005 7 6 4.4026 -2.4194 0.0057 8 7 4.6663 -2.8387 -1.3773 9 6 5.4530 -4.0789 -1.4104 10 6 5.7075 -4.4827 -2.8641 11 1 4.7569 -4.5567 -3.3924 12 8 6.5278 -3.4977 -3.4955 13 6 6.4179 -5.8374 -2.9002 14 7 6.6627 -6.2247 -4.2959 15 6 5.3992 -6.4738 -5.0025 16 6 7.5469 -7.3955 -4.3699 17 6 7.9724 -7.6142 -5.7989 18 1 7.6209 -6.9501 -6.5746 19 6 8.8106 -8.6620 -6.1160 20 7 9.1815 -8.8532 -7.3631 21 14 9.4181 -9.8110 -4.7743 22 1 8.4680 -10.9423 -4.6237 23 1 10.7581 -10.3355 -5.1411 24 1 9.5113 -9.0687 -3.4916 25 6 2.2088 -1.1955 0.0005 26 1 -0.3632 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5140 28 1 -0.3634 -0.8900 -0.5135 29 1 1.6676 2.1276 -0.0006 30 1 5.3047 0.1283 0.0014 31 1 5.3482 -2.2469 0.5196 32 1 3.8455 -3.2010 0.5223 33 1 3.8059 -2.9428 -1.8940 34 1 6.4059 -3.9182 -0.9062 35 1 4.9028 -4.8717 -0.9038 36 1 7.3914 -3.3782 -3.0771 37 1 7.3684 -5.7633 -2.3720 38 1 5.7921 -6.5887 -2.4186 39 1 4.7926 -5.5682 -4.9925 40 1 5.6095 -6.7592 -6.0333 41 1 4.8579 -7.2792 -4.5061 42 1 8.4275 -7.2254 -3.7505 43 1 7.0145 -8.2761 -4.0104 44 1 9.7715 -9.5901 -7.5862 45 1 1.6886 -2.1420 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566732632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:29 Heat of formation + Delta-G solvation = -38.671454 kcal Electronic energy + Delta-G solvation = -22647.221690 eV Core-core repulsion = 19277.370082 eV Total energy + Delta-G solvation = -3369.851608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22706 -39.56885 -37.57318 -36.37046 -34.59035 -34.48750 -33.28892 -31.10548 -29.52232 -28.17251 -27.81706 -26.27992 -24.55209 -23.79884 -22.59618 -21.99382 -21.60757 -19.02326 -17.98357 -17.76170 -17.38188 -16.98404 -16.73852 -16.05681 -15.98783 -15.76207 -15.61081 -15.18542 -14.93190 -14.53205 -14.46106 -14.18978 -13.98321 -13.86133 -13.59045 -13.44039 -13.35694 -13.20609 -13.02901 -12.69886 -12.58322 -12.46885 -12.27838 -12.16036 -11.81751 -11.59557 -11.49350 -10.79396 -10.76382 -10.58476 -10.36971 -9.76563 -9.32659 -8.95906 -8.27706 -6.31494 0.14102 0.33144 1.34025 1.36560 1.47356 2.34521 2.72033 3.02451 3.06556 3.43763 3.57146 3.74757 3.82732 3.85485 3.95868 4.05766 4.07575 4.17828 4.27984 4.32237 4.42024 4.48527 4.56759 4.63688 4.67606 4.70583 4.78085 4.80389 4.83469 4.89881 4.93457 5.01428 5.14051 5.20338 5.25263 5.29418 5.33169 5.53776 5.79743 5.95593 6.01918 6.35432 6.36557 6.67634 6.75417 7.04386 7.07973 7.31937 8.89197 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036790 B = 0.002268 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.891802 B =12345.222895 C =12441.452579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.139 4.139 3 C 0.079 3.921 4 N -0.513 5.513 5 C 0.094 3.906 6 C -0.130 4.130 7 C 0.108 3.892 8 N -0.685 5.685 9 C 0.039 3.961 10 C 0.125 3.875 11 H 0.086 0.914 12 O -0.558 6.558 13 C 0.021 3.979 14 N -0.541 5.541 15 C 0.041 3.959 16 C 0.172 3.828 17 C -0.517 4.517 18 H 0.034 0.966 19 C 0.003 3.997 20 N -0.950 5.950 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.246 1.246 25 C -0.079 4.079 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.170 0.830 30 H 0.158 0.842 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.342 0.658 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.379 0.621 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.022 0.978 42 H 0.031 0.969 43 H -0.014 1.014 44 H 0.267 0.733 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.204 14.544 22.249 31.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.078 4.078 4 N -0.221 5.221 5 C -0.063 4.063 6 C -0.133 4.133 7 C -0.021 4.021 8 N -0.316 5.316 9 C -0.090 4.090 10 C 0.065 3.935 11 H 0.104 0.896 12 O -0.363 6.363 13 C -0.107 4.107 14 N -0.265 5.265 15 C -0.107 4.107 16 C 0.045 3.955 17 C -0.555 4.555 18 H 0.052 0.948 19 C -0.194 4.194 20 N -0.590 5.590 21 Si 0.775 3.225 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.170 1.170 25 C -0.105 4.105 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.187 0.813 30 H 0.175 0.825 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.226 0.774 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.004 0.996 44 H 0.075 0.925 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.374 16.087 21.451 31.417 hybrid contribution -0.390 -2.800 0.746 2.924 sum -16.765 13.287 22.197 30.827 Atomic orbital electron populations 1.20776 0.88133 1.04095 1.03489 1.21232 0.99078 0.93616 1.00141 1.23081 0.89701 0.98881 0.96127 1.67687 1.09507 1.32121 1.12757 1.22818 1.00759 0.87412 0.95345 1.20876 0.94687 0.96534 1.01154 1.20797 0.99172 0.92281 0.89866 1.60364 1.24739 1.33457 1.13036 1.22562 0.99532 0.90714 0.96223 1.21780 0.93771 0.85625 0.92349 0.89587 1.86583 1.31417 1.59333 1.59006 1.22899 1.00995 0.97454 0.89398 1.61718 1.14369 1.36952 1.13431 1.22193 0.90393 0.99343 0.98784 1.19956 0.92423 0.87549 0.95581 1.21285 1.28611 1.12153 0.93474 0.94812 1.25926 0.96139 0.99364 0.97967 1.70060 1.36736 1.32277 1.19976 0.85648 0.77889 0.78996 0.79955 1.19308 1.20748 1.16966 1.21713 0.93305 0.99246 0.96258 0.89826 0.90188 0.90547 0.81283 0.82518 0.89331 0.92822 0.84012 0.89573 0.92974 0.77355 0.90328 0.93869 0.90807 0.93793 0.95969 0.95076 0.99625 0.92451 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.04 71.24 0.72 -0.07 16 2 C -0.14 -1.87 5.90 -19.78 -0.12 -1.99 16 3 C 0.08 1.32 10.86 84.68 0.92 2.24 16 4 N -0.51 -11.10 10.36 -195.85 -2.03 -13.13 16 5 C 0.09 1.83 10.86 84.67 0.92 2.75 16 6 C -0.13 -2.09 5.41 -19.77 -0.11 -2.20 16 7 C 0.11 1.47 5.84 85.56 0.50 1.97 16 8 N -0.68 -11.80 6.44 -517.92 -3.33 -15.14 16 9 C 0.04 0.68 5.32 86.30 0.46 1.14 16 10 C 0.12 3.07 3.02 30.60 0.09 3.16 16 11 H 0.09 2.21 6.55 -2.39 -0.02 2.19 16 12 O -0.56 -16.61 13.15 -148.98 -1.96 -18.57 16 13 C 0.02 0.63 4.62 86.31 0.40 1.03 16 14 N -0.54 -22.11 4.62 -927.06 -4.28 -26.39 16 15 C 0.04 1.58 9.14 127.69 1.17 2.75 16 16 C 0.17 8.20 3.79 85.56 0.32 8.52 16 17 C -0.52 -30.37 9.01 25.60 0.23 -30.14 16 18 H 0.03 2.24 7.37 -2.91 -0.02 2.22 16 19 C 0.00 0.17 5.47 84.66 0.46 0.64 16 20 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 21 Si 0.95 43.89 27.47 68.60 1.88 45.77 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 25 C -0.08 -1.08 9.54 22.47 0.21 -0.87 16 26 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.08 0.45 8.09 -2.39 -0.02 0.43 16 28 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 29 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 31 H 0.09 1.14 8.09 -2.39 -0.02 1.13 16 32 H 0.05 0.59 8.09 -2.39 -0.02 0.57 16 33 H 0.34 5.88 8.72 -89.69 -0.78 5.09 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.38 9.25 9.05 -74.06 -0.67 8.58 16 37 H 0.08 2.19 7.93 -2.39 -0.02 2.17 16 38 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 39 H 0.07 2.45 6.47 -2.39 -0.02 2.44 16 40 H 0.04 1.99 6.76 -2.39 -0.02 1.97 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.03 1.46 6.99 -2.39 -0.02 1.44 16 43 H -0.01 -0.64 7.55 -2.38 -0.02 -0.66 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -74.12 368.51 -3.77 -77.88 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.53 Total: 20.49 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 6.18 Total: -11.07 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -9.35 Total: -114.50 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.96 Total: -18.57 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -74.12 -3.77 -77.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566732632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.212 kcal (2) G-P(sol) polarization free energy of solvation -74.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds