Wall clock time and date at job start Tue Mar 31 2020 07:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 112.84880 * 2 1 4 4 C 1.53962 * 113.53645 * 228.69426 * 2 1 3 5 5 C 1.53786 * 87.01719 * 270.81227 * 4 2 1 6 6 C 1.53781 * 87.17350 * 334.63802 * 5 4 2 7 7 H 1.09004 * 113.61392 * 140.02430 * 6 5 4 8 8 N 1.46900 * 113.61809 * 270.84469 * 6 5 4 9 9 C 1.46903 * 110.99789 * 255.49996 * 8 6 5 10 10 C 1.50696 * 109.46583 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00579 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99769 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99933 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47096 * 90.00141 * 13 12 10 15 15 H 1.08002 * 120.00265 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00010 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00080 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00102 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47109 * 89.99610 * 18 16 14 20 20 H 1.48497 * 109.47342 * 210.00195 * 18 16 14 21 21 H 1.48506 * 109.46961 * 330.00243 * 18 16 14 22 22 C 1.46496 * 119.99910 * 0.02562 * 12 10 9 23 23 C 1.52998 * 109.47451 * 89.99729 * 22 12 10 24 24 C 1.47205 * 109.47257 * 180.02562 * 23 22 12 25 25 N 8.48045 * 105.68848 * 126.31661 * 2 1 3 26 26 H 1.08998 * 109.47320 * 288.80582 * 1 2 3 27 27 H 1.08999 * 109.47324 * 48.80173 * 1 2 3 28 28 H 1.09006 * 109.47299 * 168.80195 * 1 2 3 29 29 H 1.09005 * 109.46921 * 191.19885 * 3 2 1 30 30 H 1.08996 * 109.47532 * 311.19617 * 3 2 1 31 31 H 1.08997 * 109.47245 * 71.20043 * 3 2 1 32 32 H 1.08993 * 113.61598 * 156.29209 * 4 2 1 33 33 H 1.09000 * 113.66569 * 25.33565 * 4 2 1 34 34 H 1.09002 * 113.61357 * 220.04719 * 5 4 2 35 35 H 1.09002 * 113.61608 * 89.22881 * 5 4 2 36 36 H 1.00894 * 111.00375 * 131.53735 * 8 6 5 37 37 H 1.08994 * 109.46593 * 299.99203 * 9 8 6 38 38 H 1.08990 * 109.47521 * 59.99354 * 9 8 6 39 39 H 1.09007 * 109.46692 * 210.00284 * 13 12 10 40 40 H 1.08998 * 109.47121 * 329.99642 * 13 12 10 41 41 H 0.97004 * 119.99650 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.47163 * 209.99845 * 22 12 10 43 43 H 1.09005 * 109.47363 * 329.99509 * 22 12 10 44 44 H 1.08997 * 109.47032 * 300.00196 * 23 22 12 45 45 H 1.09002 * 109.47353 * 60.00254 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1448 -0.9317 -1.0603 5 6 2.0929 -2.0426 0.0019 6 6 2.1460 -0.9281 1.0602 7 1 1.4955 -1.1076 1.9163 8 7 3.5113 -0.5514 1.4502 9 6 3.8508 -1.0969 2.7712 10 6 5.2555 -0.6912 3.1361 11 8 5.9095 -0.0147 2.3710 12 7 5.7851 -1.0801 4.3130 13 6 7.1508 -0.6862 4.6675 14 6 7.1193 0.6283 5.4038 15 1 6.1762 1.1208 5.5895 16 6 8.2943 1.2017 5.8414 17 7 8.2668 2.3486 6.4844 18 14 9.9255 0.3496 5.5209 19 1 10.4764 0.8081 4.2202 20 1 10.8804 0.6831 6.6082 21 1 9.7164 -1.1201 5.4793 22 6 4.9953 -1.8978 5.2370 23 6 5.2288 -3.3792 4.9343 24 6 4.4347 -4.2008 5.8624 25 7 3.8231 -4.8354 6.5786 26 1 -0.3634 0.3313 0.9728 27 1 -0.3634 0.6769 -0.7732 28 1 -0.3634 -1.0081 -0.1996 29 1 3.1942 1.3533 -0.1996 30 1 1.6414 2.0076 -0.7732 31 1 1.9600 1.8734 0.9728 32 1 3.1574 -0.6533 -1.3518 33 1 1.4923 -1.1134 -1.9143 34 1 2.9716 -2.6875 0.0025 35 1 1.1573 -2.6019 0.0034 36 1 3.6293 0.4504 1.4313 37 1 3.1552 -0.7079 3.5146 38 1 3.7826 -2.1844 2.7438 39 1 7.5950 -1.4498 5.3061 40 1 7.7456 -0.5803 3.7603 41 1 9.0936 2.7522 6.7919 42 1 5.2990 -1.6841 6.2617 43 1 3.9375 -1.6644 5.1155 44 1 4.9250 -3.5930 3.9096 45 1 6.2865 -3.6127 5.0559 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568648484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:52 Heat of formation + Delta-G solvation = 12.901159 kcal Electronic energy + Delta-G solvation = -23808.952366 eV Core-core repulsion = 20441.337114 eV Total energy + Delta-G solvation = -3367.615252 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17956 -39.18925 -36.93004 -35.37031 -34.03215 -32.75480 -31.02348 -30.69058 -28.69338 -27.58804 -26.29866 -24.12927 -23.87400 -22.45807 -21.81094 -18.79429 -18.08556 -17.68948 -16.85376 -16.49257 -16.16213 -15.91184 -15.14451 -14.93273 -14.68919 -14.57311 -14.04476 -13.75121 -13.55827 -13.32385 -13.19834 -12.85736 -12.58647 -12.49917 -12.42208 -12.33517 -12.27437 -12.06042 -11.72836 -11.58665 -11.50692 -11.31005 -11.08029 -10.88743 -10.74020 -10.56816 -10.24649 -10.21173 -10.08155 -9.60269 -9.09667 -8.63221 -8.35542 -7.90659 -6.12972 -4.12587 2.66889 2.75607 3.23785 3.26156 3.31435 3.34074 3.45141 3.95003 4.25778 4.33708 4.35663 4.50313 4.78620 4.86577 4.93114 5.02240 5.05792 5.07912 5.21045 5.27400 5.33384 5.40915 5.45377 5.52099 5.53084 5.61642 5.70813 5.73022 5.73605 5.82829 5.93764 6.00768 6.01503 6.13546 6.31929 6.35414 6.57316 6.85175 7.02280 7.21204 7.39981 7.51443 7.55225 8.09155 8.40954 8.84929 8.91287 9.46807 11.00284 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.004332 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.276370 B = 6461.409651 C = 7984.879933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.121 4.121 5 C -0.134 4.134 6 C 0.069 3.931 7 H 0.055 0.945 8 N -0.655 5.655 9 C 0.040 3.960 10 C 0.509 3.491 11 O -0.518 6.518 12 N -0.594 5.594 13 C 0.215 3.785 14 C -0.531 4.531 15 H 0.074 0.926 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.118 3.882 23 C -0.051 4.051 24 C 0.216 3.784 25 N -0.443 5.443 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.357 0.643 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.040 0.960 41 H 0.265 0.735 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 -8.789 -11.183 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 C -0.202 4.202 4 C -0.159 4.159 5 C -0.172 4.172 6 C -0.042 4.042 7 H 0.073 0.927 8 N -0.290 5.290 9 C -0.093 4.093 10 C 0.295 3.705 11 O -0.393 6.393 12 N -0.326 5.326 13 C 0.095 3.905 14 C -0.570 4.570 15 H 0.092 0.908 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.009 4.009 23 C -0.093 4.093 24 C -0.102 4.102 25 N -0.121 5.121 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.180 0.820 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.205 -9.710 -10.772 19.614 hybrid contribution 0.622 0.482 0.404 0.884 sum -12.584 -9.228 -10.368 18.735 Atomic orbital electron populations 1.21580 0.93160 1.01833 1.01847 1.22083 0.95253 0.94794 0.97187 1.21751 1.01678 0.95130 1.01684 1.22951 1.01174 0.95942 0.95801 1.22930 1.01602 0.96375 0.96276 1.22695 0.88820 0.96953 0.95690 0.92742 1.60052 1.22840 1.19331 1.26815 1.21961 0.94929 1.01478 0.90921 1.20261 0.88163 0.80579 0.81476 1.90695 1.61856 1.37150 1.49598 1.47876 1.16884 1.50926 1.16954 1.19711 0.78028 0.96234 0.96512 1.21304 0.95359 1.04464 1.35863 0.90755 1.24855 0.98930 0.94666 0.94482 1.69893 1.27881 1.17338 1.38340 0.86867 0.84065 0.80403 0.78428 1.19874 1.21142 1.18965 1.21321 0.96528 0.86635 0.96397 1.19907 0.99638 0.93670 0.96051 1.29057 0.93559 0.93679 0.93901 1.81201 1.10381 1.10169 1.10301 0.92507 0.92265 0.92402 0.91170 0.92422 0.92701 0.89450 0.92206 0.90784 0.90535 0.82020 0.92588 0.88689 0.95035 0.94226 0.92517 0.88547 0.90444 0.87421 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.07 37.16 0.34 -0.65 16 2 C -0.09 -0.87 1.37 -153.60 -0.21 -1.08 16 3 C -0.15 -1.45 7.92 37.16 0.29 -1.16 16 4 C -0.12 -1.15 7.13 -25.82 -0.18 -1.34 16 5 C -0.13 -1.26 7.52 -25.92 -0.19 -1.45 16 6 C 0.07 0.71 3.69 -66.90 -0.25 0.47 16 7 H 0.05 0.54 7.85 -51.93 -0.41 0.14 16 8 N -0.66 -8.51 5.94 -107.13 -0.64 -9.15 16 9 C 0.04 0.51 4.58 -4.98 -0.02 0.49 16 10 C 0.51 9.05 7.71 -10.98 -0.08 8.96 16 11 O -0.52 -11.63 15.78 5.56 0.09 -11.54 16 12 N -0.59 -10.37 2.46 -175.06 -0.43 -10.80 16 13 C 0.22 4.72 4.23 -5.19 -0.02 4.70 16 14 C -0.53 -14.31 9.94 -34.44 -0.34 -14.65 16 15 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 18 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 22 C 0.12 1.49 5.17 -4.04 -0.02 1.47 16 23 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 24 C 0.22 2.48 15.43 -20.77 -0.32 2.16 16 25 N -0.44 -6.31 18.53 42.14 0.78 -5.53 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 7.34 -51.93 -0.38 0.03 16 29 H 0.07 0.79 7.02 -51.93 -0.36 0.43 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.09 0.95 7.98 -51.93 -0.41 0.53 16 33 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.61 7.66 -51.93 -0.40 0.22 16 36 H 0.36 5.08 6.00 -39.30 -0.24 4.84 16 37 H 0.06 0.66 7.39 -51.93 -0.38 0.27 16 38 H 0.10 0.99 7.19 -51.93 -0.37 0.62 16 39 H 0.03 0.64 7.13 -51.92 -0.37 0.27 16 40 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 44 H 0.11 0.83 7.22 -51.93 -0.38 0.46 16 45 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -32.95 367.56 -7.20 -40.16 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.36 Total: 2.21 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.29 Total: -0.80 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.49 Total: -51.50 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.95 -7.20 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568648484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.060 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds