Wall clock time and date at job start Tue Mar 31 2020 07:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 112.84880 * 2 1 4 4 C 1.53962 * 113.53645 * 228.69426 * 2 1 3 5 5 C 1.53786 * 87.01719 * 270.81227 * 4 2 1 6 6 C 1.53781 * 87.17350 * 334.63802 * 5 4 2 7 7 H 1.09004 * 113.61392 * 140.02430 * 6 5 4 8 8 N 1.46900 * 113.61809 * 270.84469 * 6 5 4 9 9 C 1.46903 * 110.99789 * 255.49996 * 8 6 5 10 10 C 1.50696 * 109.46583 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00579 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99769 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99933 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47096 * 90.00141 * 13 12 10 15 15 H 1.08002 * 120.00265 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00010 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00080 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00102 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47109 * 89.99610 * 18 16 14 20 20 H 1.48497 * 109.47342 * 210.00195 * 18 16 14 21 21 H 1.48506 * 109.46961 * 330.00243 * 18 16 14 22 22 C 1.46496 * 119.99910 * 0.02562 * 12 10 9 23 23 C 1.52998 * 109.47451 * 89.99729 * 22 12 10 24 24 C 1.47205 * 109.47257 * 180.02562 * 23 22 12 25 25 N 8.48045 * 105.68848 * 126.31661 * 2 1 3 26 26 H 1.08998 * 109.47320 * 288.80582 * 1 2 3 27 27 H 1.08999 * 109.47324 * 48.80173 * 1 2 3 28 28 H 1.09006 * 109.47299 * 168.80195 * 1 2 3 29 29 H 1.09005 * 109.46921 * 191.19885 * 3 2 1 30 30 H 1.08996 * 109.47532 * 311.19617 * 3 2 1 31 31 H 1.08997 * 109.47245 * 71.20043 * 3 2 1 32 32 H 1.08993 * 113.61598 * 156.29209 * 4 2 1 33 33 H 1.09000 * 113.66569 * 25.33565 * 4 2 1 34 34 H 1.09002 * 113.61357 * 220.04719 * 5 4 2 35 35 H 1.09002 * 113.61608 * 89.22881 * 5 4 2 36 36 H 1.00894 * 111.00375 * 131.53735 * 8 6 5 37 37 H 1.08994 * 109.46593 * 299.99203 * 9 8 6 38 38 H 1.08990 * 109.47521 * 59.99354 * 9 8 6 39 39 H 1.09007 * 109.46692 * 210.00284 * 13 12 10 40 40 H 1.08998 * 109.47121 * 329.99642 * 13 12 10 41 41 H 0.97004 * 119.99650 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.47163 * 209.99845 * 22 12 10 43 43 H 1.09005 * 109.47363 * 329.99509 * 22 12 10 44 44 H 1.08997 * 109.47032 * 300.00196 * 23 22 12 45 45 H 1.09002 * 109.47353 * 60.00254 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1448 -0.9317 -1.0603 5 6 2.0929 -2.0426 0.0019 6 6 2.1460 -0.9281 1.0602 7 1 1.4955 -1.1076 1.9163 8 7 3.5113 -0.5514 1.4502 9 6 3.8508 -1.0969 2.7712 10 6 5.2555 -0.6912 3.1361 11 8 5.9095 -0.0147 2.3710 12 7 5.7851 -1.0801 4.3130 13 6 7.1508 -0.6862 4.6675 14 6 7.1193 0.6283 5.4038 15 1 6.1762 1.1208 5.5895 16 6 8.2943 1.2017 5.8414 17 7 8.2668 2.3486 6.4844 18 14 9.9255 0.3496 5.5209 19 1 10.4764 0.8081 4.2202 20 1 10.8804 0.6831 6.6082 21 1 9.7164 -1.1201 5.4793 22 6 4.9953 -1.8978 5.2370 23 6 5.2288 -3.3792 4.9343 24 6 4.4347 -4.2008 5.8624 25 7 3.8231 -4.8354 6.5786 26 1 -0.3634 0.3313 0.9728 27 1 -0.3634 0.6769 -0.7732 28 1 -0.3634 -1.0081 -0.1996 29 1 3.1942 1.3533 -0.1996 30 1 1.6414 2.0076 -0.7732 31 1 1.9600 1.8734 0.9728 32 1 3.1574 -0.6533 -1.3518 33 1 1.4923 -1.1134 -1.9143 34 1 2.9716 -2.6875 0.0025 35 1 1.1573 -2.6019 0.0034 36 1 3.6293 0.4504 1.4313 37 1 3.1552 -0.7079 3.5146 38 1 3.7826 -2.1844 2.7438 39 1 7.5950 -1.4498 5.3061 40 1 7.7456 -0.5803 3.7603 41 1 9.0936 2.7522 6.7919 42 1 5.2990 -1.6841 6.2617 43 1 3.9375 -1.6644 5.1155 44 1 4.9250 -3.5930 3.9096 45 1 6.2865 -3.6127 5.0559 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568648484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:51 Heat of formation + Delta-G solvation = -8.990450 kcal Electronic energy + Delta-G solvation = -23809.901657 eV Core-core repulsion = 20441.337114 eV Total energy + Delta-G solvation = -3368.564543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12441 -40.39986 -37.98994 -36.71637 -35.15462 -34.63805 -32.31637 -31.44200 -30.21813 -28.41670 -27.47260 -25.21887 -24.94286 -23.77555 -22.85255 -20.05116 -19.18310 -18.98957 -18.41774 -17.63665 -17.37774 -16.85172 -16.38071 -16.15216 -15.72472 -15.63420 -15.34781 -14.73534 -14.63534 -14.56232 -14.25286 -14.22011 -13.77559 -13.70708 -13.53440 -13.39457 -13.04677 -13.01908 -12.94192 -12.93042 -12.64061 -12.37877 -12.28343 -12.11136 -11.95542 -11.84387 -11.68129 -11.48347 -11.03566 -10.84924 -10.76554 -10.50033 -9.43884 -9.29003 -8.27605 -6.32036 1.39084 1.43401 1.50473 1.69569 1.86291 1.88682 2.22889 2.37038 3.02984 3.10018 3.28657 3.54550 3.72948 3.83190 4.02827 4.07357 4.10992 4.14281 4.36329 4.37612 4.43908 4.60345 4.64484 4.73882 4.81018 4.82830 4.89384 4.90379 4.97975 5.03111 5.04512 5.11781 5.17136 5.21999 5.26283 5.37865 5.53628 5.55295 5.60625 5.65881 6.10867 6.30731 6.36476 6.62296 6.70746 6.73857 7.28917 7.49460 8.89287 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.004332 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.276370 B = 6461.409651 C = 7984.879933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.063 3.937 7 H 0.066 0.934 8 N -0.670 5.670 9 C 0.051 3.949 10 C 0.503 3.497 11 O -0.575 6.575 12 N -0.596 5.596 13 C 0.223 3.777 14 C -0.533 4.533 15 H 0.029 0.971 16 C 0.009 3.991 17 N -0.950 5.950 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.227 1.227 22 C 0.112 3.888 23 C -0.037 4.037 24 C 0.245 3.755 25 N -0.491 5.491 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.345 0.655 37 H 0.073 0.927 38 H 0.130 0.870 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.138 0.862 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.064 -11.576 -12.025 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 C -0.201 4.201 4 C -0.160 4.160 5 C -0.164 4.164 6 C -0.046 4.046 7 H 0.083 0.917 8 N -0.304 5.304 9 C -0.081 4.081 10 C 0.291 3.709 11 O -0.453 6.453 12 N -0.327 5.327 13 C 0.101 3.899 14 C -0.571 4.571 15 H 0.047 0.953 16 C -0.188 4.188 17 N -0.590 5.590 18 Si 0.767 3.233 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.150 1.150 22 C -0.012 4.012 23 C -0.078 4.078 24 C -0.072 4.072 25 N -0.169 5.169 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.166 0.834 37 H 0.090 0.910 38 H 0.147 0.853 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.156 0.844 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.224 -12.559 -11.598 22.239 hybrid contribution 0.841 1.452 0.653 1.801 sum -13.383 -11.107 -10.944 20.548 Atomic orbital electron populations 1.21568 0.91523 1.02777 1.02195 1.22121 0.96376 0.93857 0.96722 1.21723 1.00616 0.96158 1.01626 1.22909 1.00373 0.96225 0.96499 1.22934 1.02247 0.95886 0.95306 1.22800 0.87601 0.97792 0.96441 0.91650 1.60086 1.24814 1.18606 1.26919 1.21965 0.91415 1.03370 0.91362 1.21176 0.89677 0.79302 0.80718 1.90668 1.63618 1.39646 1.51412 1.47838 1.15822 1.51290 1.17730 1.19388 0.80853 0.94367 0.95335 1.21623 0.93527 1.06369 1.35605 0.95277 1.25844 1.03371 0.95356 0.94273 1.70063 1.29000 1.19559 1.40400 0.85778 0.78542 0.81353 0.77665 1.20490 1.20930 1.14974 1.21526 0.97080 0.87936 0.94702 1.19855 1.00168 0.90750 0.97034 1.29169 0.92412 0.92722 0.92897 1.81249 1.12053 1.11779 1.11812 0.92385 0.91685 0.91208 0.93139 0.91458 0.93296 0.91487 0.90857 0.91671 0.88419 0.83356 0.90976 0.85273 0.92255 0.95830 0.92549 0.89797 0.88089 0.84431 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.07 71.98 0.65 -0.95 16 2 C -0.09 -1.54 1.37 -51.59 -0.07 -1.61 16 3 C -0.14 -2.86 7.92 71.98 0.57 -2.29 16 4 C -0.12 -2.14 7.13 31.18 0.22 -1.91 16 5 C -0.13 -2.03 7.52 31.12 0.23 -1.79 16 6 C 0.06 1.18 3.69 45.44 0.17 1.34 16 7 H 0.07 1.09 7.85 -2.38 -0.02 1.07 16 8 N -0.67 -16.71 5.94 -492.86 -2.93 -19.63 16 9 C 0.05 1.19 4.58 85.56 0.39 1.58 16 10 C 0.50 17.46 7.71 87.66 0.68 18.14 16 11 O -0.57 -26.31 15.78 -3.03 -0.05 -26.36 16 12 N -0.60 -19.96 2.46 -826.15 -2.03 -21.99 16 13 C 0.22 9.56 4.23 85.63 0.36 9.92 16 14 C -0.53 -29.34 9.94 25.60 0.25 -29.08 16 15 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 16 C 0.01 0.52 5.47 84.65 0.46 0.98 16 17 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 18 Si 0.94 42.31 27.47 68.60 1.88 44.20 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.23 -8.72 6.54 99.48 0.65 -8.07 16 22 C 0.11 2.55 5.17 86.38 0.45 2.99 16 23 C -0.04 -0.57 6.03 28.79 0.17 -0.39 16 24 C 0.25 4.86 15.43 89.45 1.38 6.24 16 25 N -0.49 -12.92 18.53 20.00 0.37 -12.55 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.75 7.34 -2.38 -0.02 0.73 16 29 H 0.05 1.19 7.02 -2.38 -0.02 1.18 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 32 H 0.07 1.44 7.98 -2.39 -0.02 1.42 16 33 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.19 7.66 -2.39 -0.02 1.17 16 36 H 0.34 9.97 6.00 -89.70 -0.54 9.44 16 37 H 0.07 1.49 7.39 -2.39 -0.02 1.47 16 38 H 0.13 2.13 7.19 -2.39 -0.02 2.11 16 39 H 0.06 2.24 7.13 -2.38 -0.02 2.22 16 40 H 0.02 1.10 6.85 -2.39 -0.02 1.09 16 41 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 42 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 43 H 0.10 1.83 6.44 -2.38 -0.02 1.81 16 44 H 0.14 1.40 7.22 -2.39 -0.02 1.38 16 45 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -76.19 367.56 3.86 -72.33 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.39 Total: 19.33 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.92 Total: 3.16 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -4.29 Total: -112.65 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.20 kcal Total: -76.19 3.86 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568648484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.335 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds