Wall clock time and date at job start Tue Mar 31 2020 07:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 112.90919 * 2 1 4 4 C 1.53785 * 113.61030 * 228.75128 * 2 1 3 5 5 C 1.53787 * 87.07838 * 220.01746 * 4 2 1 6 6 C 1.53772 * 113.61349 * 131.25310 * 2 1 3 7 7 H 1.09000 * 113.61808 * 254.60996 * 6 2 1 8 8 N 1.46907 * 113.61616 * 25.43437 * 6 2 1 9 9 C 1.46897 * 110.99763 * 204.99994 * 8 6 2 10 10 C 1.50706 * 109.47280 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99660 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00094 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99594 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46928 * 90.00049 * 13 12 10 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46948 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47174 * 120.00320 * 18 16 14 21 21 H 1.48497 * 109.47378 * 240.00235 * 18 16 14 22 22 C 1.46501 * 120.00308 * 359.97438 * 12 10 9 23 23 C 1.52995 * 109.46937 * 269.99876 * 22 12 10 24 24 C 1.47196 * 109.46973 * 179.97438 * 23 22 12 25 25 N 8.46932 * 113.56484 * 119.15222 * 2 1 3 26 26 H 1.09000 * 109.46836 * 288.75041 * 1 2 3 27 27 H 1.09004 * 109.47159 * 48.74219 * 1 2 3 28 28 H 1.08994 * 109.47264 * 168.74496 * 1 2 3 29 29 H 1.08999 * 109.47141 * 191.25275 * 3 2 1 30 30 H 1.09008 * 109.47064 * 311.25686 * 3 2 1 31 31 H 1.09004 * 109.47051 * 71.25165 * 3 2 1 32 32 H 1.09003 * 113.61333 * 334.56431 * 4 2 1 33 33 H 1.09002 * 113.61351 * 105.38617 * 4 2 1 34 34 H 1.08990 * 113.61282 * 270.88184 * 5 4 2 35 35 H 1.08996 * 113.61240 * 139.98016 * 5 4 2 36 36 H 1.00891 * 111.00379 * 81.04049 * 8 6 2 37 37 H 1.08997 * 109.47661 * 59.99665 * 9 8 6 38 38 H 1.09004 * 109.47408 * 299.99460 * 9 8 6 39 39 H 1.09004 * 109.47073 * 209.99877 * 13 12 10 40 40 H 1.09000 * 109.47212 * 329.99960 * 13 12 10 41 41 H 0.96992 * 120.00316 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.46877 * 29.99967 * 22 12 10 43 43 H 1.09000 * 109.47251 * 150.00072 * 22 12 10 44 44 H 1.08999 * 109.47267 * 300.00296 * 23 22 12 45 45 H 1.09000 * 109.46990 * 60.00037 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0595 5 6 3.1924 -1.3136 -0.0001 6 6 2.1460 -0.9291 1.0593 7 1 2.5638 -0.3990 1.9152 8 7 1.2680 -2.0403 1.4496 9 6 1.5935 -2.5192 2.7996 10 6 0.6739 -3.6560 3.1647 11 8 -0.1699 -4.0300 2.3778 12 7 0.7892 -4.2570 4.3654 13 6 -0.1052 -5.3617 4.7205 14 6 0.5131 -6.6668 4.2898 15 1 1.4761 -6.6728 3.8009 16 6 -0.1501 -7.8532 4.5208 17 7 -1.3226 -7.8461 5.1165 18 14 0.6160 -9.4710 3.9863 19 1 1.9284 -9.2084 3.3431 20 1 0.8122 -10.3418 5.1731 21 1 -0.2834 -10.1487 3.0184 22 6 1.8088 -3.8056 5.3157 23 6 3.1027 -4.5889 5.0856 24 6 4.1273 -4.1350 6.0400 25 7 4.9160 -3.7816 6.7797 26 1 -0.3633 0.3303 0.9731 27 1 -0.3634 0.6777 -0.7726 28 1 -0.3633 -1.0078 -0.2006 29 1 3.1955 1.3516 -0.2005 30 1 1.6428 2.0078 -0.7726 31 1 1.9628 1.8726 0.9732 32 1 1.4944 -1.7535 -1.3490 33 1 2.5637 -0.3989 -1.9154 34 1 4.0710 -0.6688 -0.0002 35 1 3.4443 -2.3741 -0.0001 36 1 1.3155 -2.7918 0.7780 37 1 1.4666 -1.7060 3.5141 38 1 2.6268 -2.8655 2.8230 39 1 -0.2600 -5.3716 5.7994 40 1 -1.0630 -5.2299 4.2172 41 1 -1.7893 -8.6807 5.2787 42 1 1.9968 -2.7421 5.1688 43 1 1.4574 -3.9753 6.3335 44 1 2.9145 -5.6525 5.2325 45 1 3.4540 -4.4193 4.0679 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568648485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:54 Heat of formation + Delta-G solvation = 6.881438 kcal Electronic energy + Delta-G solvation = -23871.168347 eV Core-core repulsion = 20503.292061 eV Total energy + Delta-G solvation = -3367.876286 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18053 -39.08520 -36.76062 -35.24442 -34.02039 -32.79388 -30.76497 -30.51454 -28.21443 -27.36983 -26.12981 -24.14714 -23.80623 -22.59258 -22.17372 -18.80862 -18.10897 -17.54406 -16.43522 -16.25301 -16.19513 -15.30998 -15.21346 -14.78517 -14.58789 -14.30441 -14.17942 -13.81794 -13.58678 -13.23046 -13.15242 -12.74802 -12.57382 -12.40935 -12.37735 -12.26341 -12.08937 -11.79993 -11.64346 -11.42982 -11.28394 -11.24727 -11.00176 -10.83619 -10.74548 -10.61945 -10.22227 -10.17994 -10.05030 -9.66590 -8.98139 -8.49668 -8.29215 -7.84289 -6.10888 -4.16176 2.79433 2.89094 3.25684 3.31152 3.34913 3.37428 3.56056 4.05431 4.30840 4.41020 4.41713 4.58877 4.69322 4.87471 5.00178 5.11953 5.18514 5.24317 5.25303 5.34961 5.39968 5.47691 5.48409 5.54433 5.61742 5.66045 5.74116 5.79521 5.88456 5.92560 5.93515 6.10108 6.15591 6.18794 6.36546 6.55115 6.86923 7.09355 7.37396 7.42812 7.43753 7.65858 7.84765 8.14652 8.27267 8.82611 8.99769 9.49651 10.97237 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.004144 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.884416 B = 6755.189480 C = 7834.839737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.126 4.126 4 C -0.132 4.132 5 C -0.172 4.172 6 C 0.076 3.924 7 H 0.080 0.920 8 N -0.649 5.649 9 C 0.039 3.961 10 C 0.507 3.493 11 O -0.519 6.519 12 N -0.599 5.599 13 C 0.245 3.755 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.124 3.876 23 C -0.053 4.053 24 C 0.218 3.782 25 N -0.453 5.453 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.353 0.647 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.131 0.869 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 14.729 -7.360 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.184 4.184 4 C -0.169 4.169 5 C -0.211 4.211 6 C -0.035 4.035 7 H 0.098 0.902 8 N -0.280 5.280 9 C -0.094 4.094 10 C 0.293 3.707 11 O -0.394 6.394 12 N -0.332 5.332 13 C 0.126 3.874 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.722 3.278 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.003 4.003 23 C -0.094 4.094 24 C -0.099 4.099 25 N -0.131 5.131 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.174 0.826 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.149 0.851 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.013 15.306 -6.385 18.419 hybrid contribution 1.050 -1.704 -0.640 2.102 sum 9.063 13.602 -7.026 17.791 Atomic orbital electron populations 1.21484 0.93233 1.02114 1.00860 1.21931 0.96395 0.93903 0.95923 1.21574 1.00170 0.94810 1.01842 1.23028 0.97955 0.99504 0.96429 1.23596 0.97817 1.01411 0.98301 1.22732 0.91502 0.93365 0.95947 0.90176 1.59930 1.53170 1.12159 1.02781 1.21982 0.97260 0.97586 0.92532 1.20223 0.85091 0.83287 0.82144 1.90699 1.35662 1.64350 1.48685 1.48222 1.34345 1.35886 1.14767 1.19360 0.89642 0.82210 0.96206 1.21447 1.05254 0.90851 1.39185 0.92170 1.24922 0.94798 0.99184 0.95026 1.69928 1.13775 1.27307 1.41993 0.86508 0.79337 0.83603 0.78344 1.19762 1.21030 1.20909 1.21248 0.86776 0.96870 0.95401 1.20001 0.89818 1.04569 0.95036 1.29357 0.93914 0.92789 0.93859 1.81253 1.11151 1.09958 1.10693 0.92662 0.94084 0.91504 0.92759 0.92400 0.92406 0.89857 0.91883 0.90006 0.91528 0.82577 0.88701 0.92813 0.94810 0.93596 0.92701 0.90979 0.89466 0.85145 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.61 37.16 0.32 -0.99 16 2 C -0.08 -0.77 1.37 -153.70 -0.21 -0.98 16 3 C -0.13 -1.01 9.07 37.16 0.34 -0.67 16 4 C -0.13 -1.23 6.96 -25.91 -0.18 -1.41 16 5 C -0.17 -1.56 7.26 -25.91 -0.19 -1.75 16 6 C 0.08 0.77 3.73 -66.90 -0.25 0.52 16 7 H 0.08 0.77 7.82 -51.93 -0.41 0.36 16 8 N -0.65 -8.28 5.08 -107.13 -0.54 -8.82 16 9 C 0.04 0.49 4.56 -4.97 -0.02 0.47 16 10 C 0.51 9.10 7.71 -10.99 -0.08 9.01 16 11 O -0.52 -11.83 15.78 5.56 0.09 -11.74 16 12 N -0.60 -10.69 2.46 -175.05 -0.43 -11.12 16 13 C 0.24 5.71 5.20 -5.19 -0.03 5.68 16 14 C -0.53 -13.37 8.92 -34.44 -0.31 -13.68 16 15 H 0.06 1.47 7.42 -52.48 -0.39 1.08 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 18 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.12 1.61 5.21 -4.04 -0.02 1.58 16 23 C -0.05 -0.64 6.03 -29.52 -0.18 -0.82 16 24 C 0.22 2.84 15.44 -20.71 -0.32 2.52 16 25 N -0.45 -6.95 18.55 42.22 0.78 -6.17 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.84 7.57 -51.93 -0.39 0.45 16 29 H 0.05 0.39 7.34 -51.93 -0.38 0.01 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.85 7.90 -51.93 -0.41 0.44 16 33 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.08 0.66 7.65 -51.93 -0.40 0.26 16 35 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 36 H 0.35 4.86 7.81 -39.30 -0.31 4.56 16 37 H 0.09 1.06 7.39 -51.93 -0.38 0.68 16 38 H 0.05 0.58 7.19 -51.93 -0.37 0.21 16 39 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 40 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 43 H 0.09 1.13 7.89 -51.93 -0.41 0.72 16 44 H 0.13 1.81 7.26 -51.93 -0.38 1.44 16 45 H 0.10 1.08 7.22 -51.93 -0.38 0.70 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -30.74 370.81 -7.43 -38.17 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.40 Total: 1.83 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.23 Total: 1.08 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.55 Total: -50.47 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.74 -7.43 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568648485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.053 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds