Wall clock time and date at job start Tue Mar 31 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47081 * 2 1 4 4 O 1.42898 * 109.47653 * 239.99754 * 2 1 3 5 5 C 1.53008 * 109.47147 * 120.00022 * 2 1 3 6 6 N 1.46896 * 109.47122 * 187.45668 * 5 2 1 7 7 C 1.46906 * 111.00090 * 55.23019 * 6 5 2 8 8 C 1.53000 * 109.47216 * 67.31536 * 7 6 5 9 9 O 1.42904 * 109.47121 * 64.22078 * 8 7 6 10 10 C 1.42895 * 113.99587 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.46711 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99868 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99685 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99581 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00336 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47046 * 89.99890 * 15 13 11 17 17 H 1.48500 * 109.47464 * 209.99549 * 15 13 11 18 18 H 1.48503 * 109.47045 * 330.00046 * 15 13 11 19 19 C 1.46897 * 111.00180 * 291.27157 * 6 5 2 20 20 C 1.50694 * 109.47169 * 290.70200 * 19 6 5 21 21 C 1.38240 * 119.99847 * 268.97995 * 20 19 6 22 22 C 1.38237 * 119.99690 * 179.76829 * 21 20 19 23 23 C 1.38235 * 120.00103 * 0.47909 * 22 21 20 24 24 C 1.38237 * 120.00254 * 359.79722 * 23 22 21 25 25 C 1.38235 * 120.00358 * 89.25151 * 20 19 6 26 26 H 1.08993 * 109.47503 * 300.00333 * 1 2 3 27 27 H 1.09000 * 109.46771 * 60.00700 * 1 2 3 28 28 H 1.09004 * 109.46748 * 179.97438 * 1 2 3 29 29 H 0.96703 * 114.00011 * 305.34315 * 4 2 1 30 30 H 1.09000 * 109.47098 * 67.45119 * 5 2 1 31 31 H 1.09007 * 109.46521 * 307.45562 * 5 2 1 32 32 H 1.09000 * 109.46994 * 187.31835 * 7 6 5 33 33 H 1.09001 * 109.46634 * 307.31467 * 7 6 5 34 34 H 1.09002 * 109.46930 * 184.21788 * 8 7 6 35 35 H 1.09003 * 109.47129 * 304.21955 * 8 7 6 36 36 H 1.08997 * 109.47902 * 299.99695 * 10 9 8 37 37 H 1.09000 * 109.46967 * 60.00537 * 10 9 8 38 38 H 0.97004 * 119.99567 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.47156 * 170.69668 * 19 6 5 40 40 H 1.09004 * 109.46964 * 50.70030 * 19 6 5 41 41 H 1.07999 * 120.00122 * 359.97438 * 21 20 19 42 42 H 1.07999 * 120.00048 * 180.25305 * 22 21 20 43 43 H 1.08006 * 119.99888 * 179.77055 * 23 22 21 44 44 H 1.07998 * 120.00377 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.99865 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 7 3.4979 -0.5676 1.3425 7 6 3.8805 0.8505 1.3169 8 6 3.3876 1.5349 2.5935 9 8 4.0520 0.9683 3.7247 10 6 3.6619 1.5407 4.9746 11 6 4.4201 0.8714 6.0919 12 1 5.1292 0.0878 5.8696 13 6 4.2092 1.2604 7.3978 14 7 4.8713 0.6767 8.3728 15 14 2.9833 2.6163 7.7821 16 1 1.6407 2.0216 8.0038 17 1 3.4125 3.3394 9.0061 18 1 2.9219 3.5659 6.6420 19 6 4.1754 -1.3151 0.2748 20 6 4.0244 -2.7937 0.5230 21 6 4.9783 -3.4721 1.2586 22 6 4.8373 -4.8275 1.4903 23 6 3.7476 -5.5066 0.9782 24 6 2.7966 -4.8295 0.2378 25 6 2.9350 -3.4730 0.0105 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6557 -1.5683 -1.2750 30 1 1.7895 -1.7802 1.1852 31 1 1.5718 -0.2901 2.1343 32 1 4.9657 0.9330 1.2562 33 1 3.4303 1.3326 0.4491 34 1 3.6052 2.6017 2.5410 35 1 2.3121 1.3879 2.6925 36 1 3.8855 2.6075 4.9714 37 1 2.5921 1.3941 5.1232 38 1 4.7226 0.9501 9.2915 39 1 5.2338 -1.0546 0.2642 40 1 3.7290 -1.0606 -0.6865 41 1 5.8319 -2.9424 1.6550 42 1 5.5803 -5.3567 2.0684 43 1 3.6393 -6.5664 1.1562 44 1 1.9455 -5.3601 -0.1626 45 1 2.1922 -2.9440 -0.5682 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570467203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:29 Heat of formation + Delta-G solvation = -56.619057 kcal Electronic energy + Delta-G solvation = -24146.947426 eV Core-core repulsion = 20744.024800 eV Total energy + Delta-G solvation = -3402.922626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99658 -38.47303 -36.92566 -35.53019 -32.65903 -32.20732 -31.11004 -30.85135 -29.13453 -27.35032 -26.76091 -24.07371 -22.85205 -22.33388 -21.75816 -21.05722 -20.15421 -16.92433 -16.77622 -16.67902 -16.53040 -15.95067 -15.39613 -15.21020 -15.03717 -14.53125 -14.45613 -14.14194 -14.05102 -13.33911 -13.21816 -12.73773 -12.66794 -12.58443 -12.41995 -12.08951 -12.00871 -11.97599 -11.51060 -11.36060 -11.07090 -10.96393 -10.91791 -10.85769 -10.65412 -10.43166 -10.28848 -9.81700 -9.11263 -8.83966 -8.78160 -8.68698 -8.38981 -7.75463 -6.06753 -4.04746 1.41045 1.47918 3.26671 3.33485 3.34954 3.73920 3.98375 4.28579 4.39086 4.62020 4.67529 4.86320 4.90251 4.95138 4.96832 5.06417 5.13271 5.24551 5.32367 5.40668 5.47796 5.52865 5.56035 5.58160 5.69945 5.81891 5.84917 5.91591 5.93040 5.95297 6.08040 6.12749 6.17640 6.23632 6.48441 6.58767 6.65202 6.75111 7.05183 7.06979 7.20821 7.26550 7.38391 7.65764 8.11556 8.74662 9.07034 9.53225 11.06537 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.004266 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.421708 B = 6562.507416 C = 7809.411546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.057 3.943 3 H 0.105 0.895 4 O -0.556 6.556 5 C 0.018 3.982 6 N -0.508 5.508 7 C 0.055 3.945 8 C 0.063 3.937 9 O -0.363 6.363 10 C 0.168 3.832 11 C -0.513 4.513 12 H 0.083 0.917 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.063 3.937 20 C -0.062 4.062 21 C -0.096 4.096 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.121 4.121 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.368 0.632 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.035 0.965 36 H -0.001 1.001 37 H -0.005 1.005 38 H 0.265 0.735 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -6.285 -20.803 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.003 4.003 3 H 0.122 0.878 4 O -0.364 6.364 5 C -0.111 4.111 6 N -0.230 5.230 7 C -0.073 4.073 8 C -0.016 4.016 9 O -0.281 6.281 10 C 0.092 3.908 11 C -0.551 4.551 12 H 0.101 0.899 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.064 4.064 20 C -0.063 4.063 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.139 4.139 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.218 0.782 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.013 0.987 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.690 -6.057 -20.220 22.142 hybrid contribution -1.520 0.746 -0.046 1.694 sum -8.209 -5.311 -20.266 22.502 Atomic orbital electron populations 1.22451 0.96201 1.02583 1.02900 1.22883 0.93557 0.98031 0.85864 0.87779 1.86576 1.71536 1.32522 1.45812 1.22996 0.89365 1.01638 0.97119 1.62102 1.05420 1.10002 1.45478 1.22241 1.01727 0.87777 0.95546 1.22333 0.95859 0.95392 0.87973 1.88025 1.64568 1.61831 1.13692 1.20573 0.94524 0.93229 0.82439 1.20901 1.24267 1.21112 0.88846 0.89925 1.24765 0.95970 0.96418 0.95852 1.69883 1.41792 1.42166 0.99733 0.86867 0.81954 0.82724 0.78276 1.20024 1.20844 1.19185 1.21599 0.99859 0.89363 0.95572 1.19801 0.94390 0.95369 0.96707 1.21148 0.99375 0.94086 0.96889 1.21188 0.98106 0.94744 0.99580 1.21089 0.94988 0.99719 0.98734 1.21051 0.99139 0.94513 0.99649 1.20974 0.97655 0.94297 1.00999 0.91215 0.91983 0.92258 0.78184 0.89996 0.89430 0.89978 0.93534 0.94252 0.94672 0.98306 0.98740 0.92469 0.90765 0.89489 0.85794 0.86184 0.86510 0.86536 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.49 37.15 0.35 -1.17 16 2 C 0.06 0.57 3.29 -26.73 -0.09 0.48 16 3 H 0.10 1.12 5.77 -51.93 -0.30 0.82 16 4 O -0.56 -5.38 9.93 -35.23 -0.35 -5.73 16 5 C 0.02 0.22 4.70 -3.82 -0.02 0.20 16 6 N -0.51 -7.45 4.60 -236.07 -1.09 -8.54 16 7 C 0.05 0.80 5.05 -3.82 -0.02 0.78 16 8 C 0.06 1.10 6.00 37.16 0.22 1.32 16 9 O -0.36 -8.61 10.26 -35.23 -0.36 -8.97 16 10 C 0.17 4.35 4.76 36.01 0.17 4.52 16 11 C -0.51 -15.58 9.99 -34.44 -0.34 -15.93 16 12 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 15 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 19 C 0.06 0.80 4.88 -4.98 -0.02 0.78 16 20 C -0.06 -0.79 5.01 -104.63 -0.52 -1.32 16 21 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 24 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.12 -1.31 7.97 -39.58 -0.32 -1.63 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.37 2.65 6.28 45.56 0.29 2.93 16 30 H 0.08 1.00 5.58 -51.93 -0.29 0.71 16 31 H 0.09 1.23 6.64 -51.93 -0.34 0.88 16 32 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 33 H 0.05 0.57 5.66 -51.93 -0.29 0.28 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.58 6.51 -51.93 -0.34 0.24 16 36 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 37 H -0.01 -0.13 7.57 -51.93 -0.39 -0.52 16 38 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.07 0.96 7.78 -51.93 -0.40 0.56 16 40 H 0.09 1.03 4.70 -51.93 -0.24 0.78 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.11 0.94 4.79 -52.48 -0.25 0.69 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -33.71 350.93 -8.99 -42.70 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.33 Total: 2.52 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.26 Total: -16.97 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.31 Total: -35.87 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.71 Total: -14.71 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.71 -8.99 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570467203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.920 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds