Wall clock time and date at job start Tue Mar 31 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47081 * 2 1 4 4 O 1.42898 * 109.47653 * 239.99754 * 2 1 3 5 5 C 1.53008 * 109.47147 * 120.00022 * 2 1 3 6 6 N 1.46896 * 109.47122 * 187.45668 * 5 2 1 7 7 C 1.46906 * 111.00090 * 55.23019 * 6 5 2 8 8 C 1.53000 * 109.47216 * 67.31536 * 7 6 5 9 9 O 1.42904 * 109.47121 * 64.22078 * 8 7 6 10 10 C 1.42895 * 113.99587 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.46711 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99868 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99685 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99581 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00336 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47046 * 89.99890 * 15 13 11 17 17 H 1.48500 * 109.47464 * 209.99549 * 15 13 11 18 18 H 1.48503 * 109.47045 * 330.00046 * 15 13 11 19 19 C 1.46897 * 111.00180 * 291.27157 * 6 5 2 20 20 C 1.50694 * 109.47169 * 290.70200 * 19 6 5 21 21 C 1.38240 * 119.99847 * 268.97995 * 20 19 6 22 22 C 1.38237 * 119.99690 * 179.76829 * 21 20 19 23 23 C 1.38235 * 120.00103 * 0.47909 * 22 21 20 24 24 C 1.38237 * 120.00254 * 359.79722 * 23 22 21 25 25 C 1.38235 * 120.00358 * 89.25151 * 20 19 6 26 26 H 1.08993 * 109.47503 * 300.00333 * 1 2 3 27 27 H 1.09000 * 109.46771 * 60.00700 * 1 2 3 28 28 H 1.09004 * 109.46748 * 179.97438 * 1 2 3 29 29 H 0.96703 * 114.00011 * 305.34315 * 4 2 1 30 30 H 1.09000 * 109.47098 * 67.45119 * 5 2 1 31 31 H 1.09007 * 109.46521 * 307.45562 * 5 2 1 32 32 H 1.09000 * 109.46994 * 187.31835 * 7 6 5 33 33 H 1.09001 * 109.46634 * 307.31467 * 7 6 5 34 34 H 1.09002 * 109.46930 * 184.21788 * 8 7 6 35 35 H 1.09003 * 109.47129 * 304.21955 * 8 7 6 36 36 H 1.08997 * 109.47902 * 299.99695 * 10 9 8 37 37 H 1.09000 * 109.46967 * 60.00537 * 10 9 8 38 38 H 0.97004 * 119.99567 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.47156 * 170.69668 * 19 6 5 40 40 H 1.09004 * 109.46964 * 50.70030 * 19 6 5 41 41 H 1.07999 * 120.00122 * 359.97438 * 21 20 19 42 42 H 1.07999 * 120.00048 * 180.25305 * 22 21 20 43 43 H 1.08006 * 119.99888 * 179.77055 * 23 22 21 44 44 H 1.07998 * 120.00377 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.99865 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 7 3.4979 -0.5676 1.3425 7 6 3.8805 0.8505 1.3169 8 6 3.3876 1.5349 2.5935 9 8 4.0520 0.9683 3.7247 10 6 3.6619 1.5407 4.9746 11 6 4.4201 0.8714 6.0919 12 1 5.1292 0.0878 5.8696 13 6 4.2092 1.2604 7.3978 14 7 4.8713 0.6767 8.3728 15 14 2.9833 2.6163 7.7821 16 1 1.6407 2.0216 8.0038 17 1 3.4125 3.3394 9.0061 18 1 2.9219 3.5659 6.6420 19 6 4.1754 -1.3151 0.2748 20 6 4.0244 -2.7937 0.5230 21 6 4.9783 -3.4721 1.2586 22 6 4.8373 -4.8275 1.4903 23 6 3.7476 -5.5066 0.9782 24 6 2.7966 -4.8295 0.2378 25 6 2.9350 -3.4730 0.0105 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6557 -1.5683 -1.2750 30 1 1.7895 -1.7802 1.1852 31 1 1.5718 -0.2901 2.1343 32 1 4.9657 0.9330 1.2562 33 1 3.4303 1.3326 0.4491 34 1 3.6052 2.6017 2.5410 35 1 2.3121 1.3879 2.6925 36 1 3.8855 2.6075 4.9714 37 1 2.5921 1.3941 5.1232 38 1 4.7226 0.9501 9.2915 39 1 5.2338 -1.0546 0.2642 40 1 3.7290 -1.0606 -0.6865 41 1 5.8319 -2.9424 1.6550 42 1 5.5803 -5.3567 2.0684 43 1 3.6393 -6.5664 1.1562 44 1 1.9455 -5.3601 -0.1626 45 1 2.1922 -2.9440 -0.5682 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570467203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:29 Heat of formation + Delta-G solvation = -80.901373 kcal Electronic energy + Delta-G solvation = -24148.000386 eV Core-core repulsion = 20744.024800 eV Total energy + Delta-G solvation = -3403.975586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94315 -39.42207 -38.45178 -36.63509 -34.84750 -33.19602 -32.05620 -31.74331 -30.65413 -29.13034 -27.65593 -25.17214 -23.99123 -23.68282 -23.26275 -22.03833 -21.19719 -19.03436 -17.82067 -17.62449 -17.54501 -17.31063 -16.69196 -16.36886 -16.27159 -15.96810 -15.58111 -15.39312 -15.17921 -14.68120 -14.40993 -14.21070 -13.89068 -13.75065 -13.39509 -13.22740 -13.08023 -12.89673 -12.83229 -12.71094 -12.49790 -12.44732 -12.05281 -11.92208 -11.81109 -11.73923 -11.58668 -11.30793 -11.22149 -10.91380 -10.27794 -9.74737 -9.61876 -8.75711 -8.36494 -6.44001 0.49875 0.56232 1.32036 1.35821 1.46712 2.29592 2.78879 2.95951 3.10519 3.24440 3.34255 3.80979 3.94358 4.05072 4.07759 4.13925 4.20034 4.25055 4.29238 4.32589 4.44011 4.52310 4.56500 4.63891 4.65980 4.71028 4.82065 4.86174 4.91778 4.96410 5.01791 5.04222 5.16728 5.21041 5.23982 5.28371 5.45604 5.60026 5.67734 5.80571 5.95587 6.15878 6.21499 6.25747 6.60404 6.71706 6.83227 7.20835 8.81103 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.004266 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.421708 B = 6562.507416 C = 7809.411546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 H 0.099 0.901 4 O -0.561 6.561 5 C 0.020 3.980 6 N -0.539 5.539 7 C 0.061 3.939 8 C 0.055 3.945 9 O -0.393 6.393 10 C 0.180 3.820 11 C -0.542 4.542 12 H 0.025 0.975 13 C 0.012 3.988 14 N -0.944 5.944 15 Si 0.957 3.043 16 H -0.259 1.259 17 H -0.273 1.273 18 H -0.245 1.245 19 C 0.071 3.929 20 C -0.077 4.077 21 C -0.127 4.127 22 C -0.134 4.134 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.120 4.120 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.380 0.620 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.010 0.990 37 H 0.007 0.993 38 H 0.272 0.728 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.126 0.874 43 H 0.140 0.860 44 H 0.149 0.851 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.462 -5.391 -22.486 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.009 3.991 3 H 0.117 0.883 4 O -0.371 6.371 5 C -0.108 4.108 6 N -0.261 5.261 7 C -0.066 4.066 8 C -0.023 4.023 9 O -0.312 6.312 10 C 0.104 3.896 11 C -0.580 4.580 12 H 0.044 0.956 13 C -0.186 4.186 14 N -0.584 5.584 15 Si 0.778 3.222 16 H -0.184 1.184 17 H -0.198 1.198 18 H -0.168 1.168 19 C -0.056 4.056 20 C -0.078 4.078 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.144 0.856 43 H 0.158 0.842 44 H 0.166 0.834 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.797 -5.180 -21.937 24.577 hybrid contribution -0.475 0.323 0.435 0.720 sum -10.272 -4.857 -21.501 24.319 Atomic orbital electron populations 1.22404 0.94565 1.03500 1.03196 1.22663 0.94653 0.97206 0.84614 0.88304 1.86544 1.71867 1.33453 1.45268 1.22965 0.88024 1.02031 0.97803 1.62017 1.07021 1.10084 1.47016 1.22168 1.01202 0.88231 0.95041 1.22690 0.96351 0.96454 0.86764 1.87983 1.65899 1.62833 1.14483 1.20267 0.94076 0.92970 0.82264 1.21163 1.24521 1.20842 0.91485 0.95624 1.25863 0.98203 0.99424 0.95077 1.70048 1.43648 1.44135 1.00551 0.85587 0.78797 0.78873 0.78926 1.18398 1.19770 1.16835 1.21545 0.99030 0.89336 0.95646 1.19910 0.95144 0.95418 0.97321 1.21213 0.99781 0.95070 0.98515 1.21381 0.99215 0.94411 1.00184 1.21433 0.94409 1.00962 0.98210 1.21473 0.99645 0.94454 0.98651 1.21256 0.97250 0.94768 1.00538 0.91409 0.91159 0.91107 0.76799 0.89769 0.91215 0.91149 0.90483 0.92632 0.93333 0.97246 0.97582 0.91853 0.92146 0.88032 0.87701 0.85565 0.84194 0.83368 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.49 71.98 0.68 -1.74 16 2 C 0.07 1.20 3.29 30.60 0.10 1.30 16 3 H 0.10 1.85 5.77 -2.38 -0.01 1.84 16 4 O -0.56 -9.22 9.93 -148.98 -1.48 -10.70 16 5 C 0.02 0.48 4.70 86.31 0.41 0.88 16 6 N -0.54 -15.77 4.60 -900.78 -4.15 -19.92 16 7 C 0.06 1.75 5.05 86.30 0.44 2.18 16 8 C 0.05 1.87 6.00 71.98 0.43 2.30 16 9 O -0.39 -19.00 10.26 -148.98 -1.53 -20.53 16 10 C 0.18 9.33 4.76 71.24 0.34 9.67 16 11 C -0.54 -34.19 9.99 25.60 0.26 -33.93 16 12 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 13 C 0.01 0.72 5.47 84.65 0.46 1.18 16 14 N -0.94 -60.82 13.96 21.45 0.30 -60.52 16 15 Si 0.96 44.17 27.47 68.60 1.88 46.05 16 16 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 19 C 0.07 1.81 4.88 85.56 0.42 2.23 16 20 C -0.08 -1.99 5.01 -19.87 -0.10 -2.09 16 21 C -0.13 -3.66 9.70 22.27 0.22 -3.45 16 22 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 23 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 24 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 25 C -0.12 -2.39 7.97 22.27 0.18 -2.21 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.38 4.13 6.28 -74.06 -0.46 3.66 16 30 H 0.08 1.93 5.58 -2.39 -0.01 1.91 16 31 H 0.07 1.90 6.64 -2.38 -0.02 1.88 16 32 H 0.07 2.15 7.86 -2.39 -0.02 2.13 16 33 H 0.08 1.74 5.66 -2.39 -0.01 1.73 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.53 6.51 -2.39 -0.02 1.52 16 36 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 37 H 0.01 0.32 7.57 -2.39 -0.02 0.30 16 38 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.06 1.66 7.78 -2.39 -0.02 1.64 16 40 H 0.10 2.26 4.70 -2.38 -0.01 2.25 16 41 H 0.10 3.26 8.06 -2.91 -0.02 3.23 16 42 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.14 1.88 4.79 -2.91 -0.01 1.87 16 Total: -1.00 -76.19 350.93 -0.01 -76.20 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.46 Total: 20.80 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 4.50 Total: -31.40 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -3.85 Total: -80.44 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -3.01 Total: -31.22 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -76.19 -0.01 -76.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570467203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.699 kcal (2) G-P(sol) polarization free energy of solvation -76.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds