Wall clock time and date at job start Tue Mar 31 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46968 * 2 1 4 4 O 1.42905 * 109.46834 * 119.99571 * 2 1 3 5 5 C 1.52997 * 109.47614 * 239.99624 * 2 1 3 6 6 N 1.46894 * 109.47147 * 172.79090 * 5 2 1 7 7 C 1.46902 * 110.99803 * 309.59900 * 6 5 2 8 8 C 1.52996 * 109.47404 * 288.34772 * 7 6 5 9 9 O 1.42902 * 109.46973 * 66.75414 * 8 7 6 10 10 C 1.42904 * 113.99604 * 184.88602 * 9 8 7 11 11 C 1.50701 * 109.46687 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00258 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99853 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00168 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00157 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47413 * 89.99472 * 15 13 11 17 17 H 1.48500 * 109.47240 * 209.99658 * 15 13 11 18 18 H 1.48504 * 109.47191 * 329.99621 * 15 13 11 19 19 C 1.46902 * 111.00359 * 73.55646 * 6 5 2 20 20 C 1.50694 * 109.47020 * 73.47050 * 19 6 5 21 21 C 1.38232 * 120.00448 * 273.34710 * 20 19 6 22 22 C 1.38233 * 120.00366 * 179.76851 * 21 20 19 23 23 C 1.38235 * 119.99710 * 0.50162 * 22 21 20 24 24 C 1.38230 * 120.00401 * 359.75214 * 23 22 21 25 25 C 1.38236 * 119.99437 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46967 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47582 * 300.00155 * 1 2 3 28 28 H 1.09001 * 109.46962 * 60.00402 * 1 2 3 29 29 H 0.96703 * 114.00087 * 61.88168 * 4 2 1 30 30 H 1.08996 * 109.46709 * 52.78439 * 5 2 1 31 31 H 1.09003 * 109.47013 * 292.79565 * 5 2 1 32 32 H 1.08999 * 109.46914 * 48.35144 * 7 6 5 33 33 H 1.09008 * 109.46843 * 168.34873 * 7 6 5 34 34 H 1.09000 * 109.47032 * 186.75683 * 8 7 6 35 35 H 1.09001 * 109.47171 * 306.75055 * 8 7 6 36 36 H 1.09000 * 109.47403 * 299.99812 * 10 9 8 37 37 H 1.09001 * 109.47096 * 60.00232 * 10 9 8 38 38 H 0.96998 * 120.00137 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.47203 * 193.47540 * 19 6 5 40 40 H 1.08999 * 109.46524 * 313.47649 * 19 6 5 41 41 H 1.08008 * 119.99821 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.00215 * 180.23141 * 22 21 20 43 43 H 1.08003 * 120.00043 * 179.72356 * 23 22 21 44 44 H 1.07995 * 120.00700 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99586 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0401 -0.7213 -1.2491 6 7 3.4987 -0.5726 -1.3391 7 6 3.8942 0.8350 -1.1958 8 6 3.4949 1.6076 -2.4545 9 8 2.0700 1.6601 -2.5493 10 6 1.5894 2.2666 -3.7506 11 6 0.0824 2.2678 -3.7446 12 1 -0.4546 1.8472 -2.9073 13 6 -0.6108 2.8060 -4.8079 14 7 -1.9260 2.8067 -4.8029 15 14 0.3179 3.5330 -6.2565 16 1 0.5601 2.4754 -7.2704 17 1 -0.4859 4.6248 -6.8623 18 1 1.6181 4.0768 -5.7883 19 6 4.1762 -1.4138 -0.3434 20 6 4.0984 -2.8573 -0.7689 21 6 2.9993 -3.6214 -0.4240 22 6 2.9258 -4.9442 -0.8184 23 6 3.9562 -5.5058 -1.5490 24 6 5.0577 -4.7433 -1.8896 25 6 5.1286 -3.4189 -1.4999 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7448 -1.6032 1.2187 30 1 1.5752 -0.2875 -2.1344 31 1 1.7858 -1.7794 -1.1870 32 1 3.3925 1.2669 -0.3298 33 1 4.9738 0.8969 -1.0586 34 1 3.8930 2.6209 -2.4004 35 1 3.8993 1.1049 -3.3330 36 1 1.9537 3.2922 -3.8109 37 1 1.9484 1.7023 -4.6113 38 1 -2.4137 3.1857 -5.5508 39 1 5.2211 -1.1138 -0.2649 40 1 3.6900 -1.2937 0.6247 41 1 2.1964 -3.1839 0.1510 42 1 2.0654 -5.5401 -0.5521 43 1 3.9008 -6.5406 -1.8534 44 1 5.8629 -5.1821 -2.4600 45 1 5.9894 -2.8232 -1.7656 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570467204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:31 Heat of formation + Delta-G solvation = -61.018369 kcal Electronic energy + Delta-G solvation = -24491.185883 eV Core-core repulsion = 21088.072489 eV Total energy + Delta-G solvation = -3403.113394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84826 -38.46024 -36.84127 -35.35304 -32.71839 -32.02528 -30.96668 -30.79864 -29.13031 -27.46233 -26.44029 -23.84707 -22.69510 -22.22751 -21.83153 -21.10089 -20.07924 -16.91190 -16.75779 -16.44020 -16.21240 -15.92908 -15.23915 -15.19163 -15.02233 -14.55724 -14.29430 -13.95334 -13.94846 -13.41721 -13.05546 -12.83511 -12.54883 -12.39588 -12.28638 -11.95487 -11.59792 -11.57255 -11.51358 -11.19594 -11.11506 -10.89505 -10.89298 -10.72281 -10.68106 -10.33006 -9.94821 -9.85563 -9.18315 -8.91071 -8.82924 -8.74213 -8.44608 -7.71328 -6.14017 -4.12864 1.35562 1.40503 3.23977 3.31204 3.32679 3.71391 4.32114 4.34159 4.47959 4.69304 4.85866 4.87938 5.00758 5.07764 5.15439 5.18463 5.29118 5.39234 5.42869 5.50655 5.55004 5.63087 5.77404 5.87084 5.91658 5.92897 6.01240 6.03831 6.08591 6.18974 6.22299 6.44352 6.48954 6.54448 6.60314 6.62729 6.67122 6.71328 7.00038 7.01076 7.29310 7.37406 7.58770 7.73973 7.99844 8.63892 8.95853 9.46008 10.98740 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.004082 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.282139 B = 6858.382573 C = 7168.841244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.066 3.934 3 H 0.113 0.887 4 O -0.567 6.567 5 C 0.018 3.982 6 N -0.520 5.520 7 C 0.050 3.950 8 C 0.061 3.939 9 O -0.377 6.377 10 C 0.168 3.832 11 C -0.516 4.516 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.874 3.126 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.061 3.939 20 C -0.061 4.061 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.105 4.105 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.364 0.636 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.001 0.999 37 H -0.002 1.002 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.969 -12.535 9.247 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.007 3.993 3 H 0.131 0.869 4 O -0.373 6.373 5 C -0.109 4.109 6 N -0.243 5.243 7 C -0.077 4.077 8 C -0.016 4.016 9 O -0.297 6.297 10 C 0.093 3.907 11 C -0.554 4.554 12 H 0.100 0.900 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.701 3.299 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.066 4.066 20 C -0.062 4.062 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.124 4.124 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.211 0.789 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.018 0.982 37 H 0.016 0.984 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.093 -12.094 8.920 19.931 hybrid contribution -0.007 0.256 -0.611 0.663 sum 13.085 -11.838 8.309 19.504 Atomic orbital electron populations 1.22373 0.95900 1.01752 1.03671 1.22760 0.94061 0.98036 0.84402 0.86935 1.86543 1.77664 1.27518 1.45612 1.23150 0.87553 1.00251 0.99980 1.62289 1.07137 1.06650 1.48197 1.22307 0.99619 0.88181 0.97626 1.22368 0.84805 0.97265 0.97210 1.87874 1.17667 1.81327 1.42816 1.20580 0.96006 0.91384 0.82742 1.20856 0.88199 1.39839 1.06524 0.89996 1.24749 0.94753 0.95454 0.97910 1.69870 1.05942 1.45665 1.31922 0.86874 0.80331 0.79479 0.83202 1.19969 1.20890 1.19141 1.21563 0.99698 0.89042 0.96314 1.19852 0.94057 0.95387 0.96871 1.21025 0.97545 0.94054 1.00707 1.21104 0.98675 0.95331 0.98775 1.21084 0.94441 0.99751 0.99346 1.21121 0.98250 0.94446 1.00182 1.21036 0.98876 0.94879 0.97596 0.93255 0.92645 0.89678 0.78883 0.86314 0.91329 0.92913 0.90495 0.94112 0.93458 0.98171 0.98390 0.92401 0.91159 0.89771 0.86663 0.86334 0.86509 0.86431 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 9.54 37.16 0.35 -2.38 16 2 C 0.07 0.99 2.96 -26.73 -0.08 0.91 16 3 H 0.11 1.90 5.35 -51.93 -0.28 1.62 16 4 O -0.57 -7.38 10.36 -35.23 -0.37 -7.75 16 5 C 0.02 0.28 4.46 -3.83 -0.02 0.27 16 6 N -0.52 -7.54 4.60 -236.08 -1.09 -8.62 16 7 C 0.05 0.72 5.22 -3.83 -0.02 0.70 16 8 C 0.06 1.05 6.23 37.16 0.23 1.28 16 9 O -0.38 -8.04 6.96 -35.23 -0.25 -8.29 16 10 C 0.17 4.10 4.76 36.01 0.17 4.27 16 11 C -0.52 -14.66 9.99 -34.44 -0.34 -15.00 16 12 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 15 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 19 C 0.06 0.74 5.03 -4.98 -0.03 0.72 16 20 C -0.06 -0.74 5.18 -104.63 -0.54 -1.28 16 21 C -0.11 -1.30 8.14 -39.59 -0.32 -1.62 16 22 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.13 -1.31 10.05 -39.59 -0.40 -1.71 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.11 -1.22 9.69 -39.58 -0.38 -1.60 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.36 3.66 7.28 45.56 0.33 3.99 16 30 H 0.12 2.31 5.96 -51.93 -0.31 2.00 16 31 H 0.07 0.99 5.24 -51.93 -0.27 0.72 16 32 H 0.05 0.79 5.35 -51.93 -0.28 0.52 16 33 H 0.08 0.93 7.72 -51.92 -0.40 0.53 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 37 H 0.00 -0.04 7.57 -51.93 -0.39 -0.43 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.07 0.80 7.62 -51.93 -0.40 0.40 16 40 H 0.08 1.04 4.72 -51.93 -0.25 0.79 16 41 H 0.12 1.14 5.67 -52.48 -0.30 0.84 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -30.64 349.88 -8.89 -39.54 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.31 Total: 6.39 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.27 Total: -16.80 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.31 Total: -34.90 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.61 Total: -16.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.64 -8.89 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570467204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.481 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds