Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46968 * 2 1 4 4 O 1.42905 * 109.46834 * 119.99571 * 2 1 3 5 5 C 1.52997 * 109.47614 * 239.99624 * 2 1 3 6 6 N 1.46894 * 109.47147 * 172.79090 * 5 2 1 7 7 C 1.46902 * 110.99803 * 309.59900 * 6 5 2 8 8 C 1.52996 * 109.47404 * 288.34772 * 7 6 5 9 9 O 1.42902 * 109.46973 * 66.75414 * 8 7 6 10 10 C 1.42904 * 113.99604 * 184.88602 * 9 8 7 11 11 C 1.50701 * 109.46687 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00258 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99853 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00168 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00157 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47413 * 89.99472 * 15 13 11 17 17 H 1.48500 * 109.47240 * 209.99658 * 15 13 11 18 18 H 1.48504 * 109.47191 * 329.99621 * 15 13 11 19 19 C 1.46902 * 111.00359 * 73.55646 * 6 5 2 20 20 C 1.50694 * 109.47020 * 73.47050 * 19 6 5 21 21 C 1.38232 * 120.00448 * 273.34710 * 20 19 6 22 22 C 1.38233 * 120.00366 * 179.76851 * 21 20 19 23 23 C 1.38235 * 119.99710 * 0.50162 * 22 21 20 24 24 C 1.38230 * 120.00401 * 359.75214 * 23 22 21 25 25 C 1.38236 * 119.99437 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46967 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47582 * 300.00155 * 1 2 3 28 28 H 1.09001 * 109.46962 * 60.00402 * 1 2 3 29 29 H 0.96703 * 114.00087 * 61.88168 * 4 2 1 30 30 H 1.08996 * 109.46709 * 52.78439 * 5 2 1 31 31 H 1.09003 * 109.47013 * 292.79565 * 5 2 1 32 32 H 1.08999 * 109.46914 * 48.35144 * 7 6 5 33 33 H 1.09008 * 109.46843 * 168.34873 * 7 6 5 34 34 H 1.09000 * 109.47032 * 186.75683 * 8 7 6 35 35 H 1.09001 * 109.47171 * 306.75055 * 8 7 6 36 36 H 1.09000 * 109.47403 * 299.99812 * 10 9 8 37 37 H 1.09001 * 109.47096 * 60.00232 * 10 9 8 38 38 H 0.96998 * 120.00137 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.47203 * 193.47540 * 19 6 5 40 40 H 1.08999 * 109.46524 * 313.47649 * 19 6 5 41 41 H 1.08008 * 119.99821 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.00215 * 180.23141 * 22 21 20 43 43 H 1.08003 * 120.00043 * 179.72356 * 23 22 21 44 44 H 1.07995 * 120.00700 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99586 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0401 -0.7213 -1.2491 6 7 3.4987 -0.5726 -1.3391 7 6 3.8942 0.8350 -1.1958 8 6 3.4949 1.6076 -2.4545 9 8 2.0700 1.6601 -2.5493 10 6 1.5894 2.2666 -3.7506 11 6 0.0824 2.2678 -3.7446 12 1 -0.4546 1.8472 -2.9073 13 6 -0.6108 2.8060 -4.8079 14 7 -1.9260 2.8067 -4.8029 15 14 0.3179 3.5330 -6.2565 16 1 0.5601 2.4754 -7.2704 17 1 -0.4859 4.6248 -6.8623 18 1 1.6181 4.0768 -5.7883 19 6 4.1762 -1.4138 -0.3434 20 6 4.0984 -2.8573 -0.7689 21 6 2.9993 -3.6214 -0.4240 22 6 2.9258 -4.9442 -0.8184 23 6 3.9562 -5.5058 -1.5490 24 6 5.0577 -4.7433 -1.8896 25 6 5.1286 -3.4189 -1.4999 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7448 -1.6032 1.2187 30 1 1.5752 -0.2875 -2.1344 31 1 1.7858 -1.7794 -1.1870 32 1 3.3925 1.2669 -0.3298 33 1 4.9738 0.8969 -1.0586 34 1 3.8930 2.6209 -2.4004 35 1 3.8993 1.1049 -3.3330 36 1 1.9537 3.2922 -3.8109 37 1 1.9484 1.7023 -4.6113 38 1 -2.4137 3.1857 -5.5508 39 1 5.2211 -1.1138 -0.2649 40 1 3.6900 -1.2937 0.6247 41 1 2.1964 -3.1839 0.1510 42 1 2.0654 -5.5401 -0.5521 43 1 3.9008 -6.5406 -1.8534 44 1 5.8629 -5.1821 -2.4600 45 1 5.9894 -2.8232 -1.7656 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570467204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = -81.810801 kcal Electronic energy + Delta-G solvation = -24492.087510 eV Core-core repulsion = 21088.072489 eV Total energy + Delta-G solvation = -3404.015022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.87582 -39.47525 -38.36481 -36.55286 -34.81832 -33.06669 -32.10587 -31.70718 -30.62098 -29.19070 -27.54708 -25.01394 -23.90589 -23.72198 -23.23119 -22.02982 -21.24769 -18.99530 -17.79287 -17.60559 -17.41735 -17.17023 -16.79288 -16.34015 -16.16145 -15.95609 -15.59632 -15.28837 -15.09605 -14.71408 -14.33384 -14.21720 -13.80017 -13.64523 -13.43752 -13.20439 -13.08881 -12.93939 -12.80056 -12.55450 -12.47394 -12.36566 -12.15808 -11.91397 -11.82154 -11.72580 -11.57979 -11.33855 -11.03623 -10.88115 -10.20599 -9.71776 -9.60132 -8.84801 -8.34490 -6.40251 0.52522 0.59071 1.33658 1.34971 1.45546 2.30053 2.81723 2.98871 3.15068 3.27696 3.39682 3.89182 3.98060 4.07590 4.09615 4.18833 4.23889 4.30887 4.33993 4.46382 4.51698 4.56459 4.63952 4.68048 4.72626 4.74895 4.84308 4.86097 4.93449 5.04134 5.05760 5.21494 5.24142 5.25461 5.33785 5.34552 5.50754 5.63887 5.69771 5.80940 5.98427 6.14189 6.20377 6.27865 6.63663 6.74020 6.79727 7.23963 8.81940 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.004082 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.282139 B = 6858.382573 C = 7168.841244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 H 0.093 0.907 4 O -0.563 6.563 5 C 0.030 3.970 6 N -0.528 5.528 7 C 0.055 3.945 8 C 0.054 3.946 9 O -0.389 6.389 10 C 0.179 3.821 11 C -0.532 4.532 12 H 0.039 0.961 13 C 0.016 3.984 14 N -0.942 5.942 15 Si 0.947 3.053 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.248 1.248 19 C 0.067 3.933 20 C -0.078 4.078 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.119 4.119 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.380 0.620 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.006 0.994 37 H 0.003 0.997 38 H 0.271 0.729 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.124 0.876 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.279 -13.338 9.064 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.022 3.978 3 H 0.110 0.890 4 O -0.371 6.371 5 C -0.099 4.099 6 N -0.250 5.250 7 C -0.072 4.072 8 C -0.023 4.023 9 O -0.309 6.309 10 C 0.103 3.897 11 C -0.570 4.570 12 H 0.057 0.943 13 C -0.182 4.182 14 N -0.582 5.582 15 Si 0.769 3.231 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.172 1.172 19 C -0.059 4.059 20 C -0.078 4.078 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.137 4.137 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.229 0.771 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.142 0.858 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.423 -12.919 8.762 21.944 hybrid contribution -0.732 0.382 -0.444 0.938 sum 14.691 -12.537 8.317 21.028 Atomic orbital electron populations 1.22301 0.96615 1.02486 1.01779 1.22397 0.93233 0.97234 0.84902 0.88968 1.86518 1.77430 1.28781 1.44349 1.22878 0.88370 1.00375 0.98245 1.62254 1.06344 1.06991 1.49456 1.22315 1.01260 0.87830 0.95841 1.22664 0.82259 0.98725 0.98659 1.87892 1.20629 1.81046 1.41293 1.20258 0.93374 0.91879 0.84161 1.21116 0.90643 1.39679 1.05515 0.94295 1.25710 0.95624 0.95719 1.01164 1.70021 1.07950 1.46900 1.33283 0.85732 0.79520 0.78901 0.78955 1.18877 1.20124 1.17163 1.21540 0.99972 0.88891 0.95510 1.19920 0.94787 0.95292 0.97846 1.21229 0.97713 0.94586 1.01042 1.21407 0.99469 0.95336 0.98610 1.21427 0.94131 1.00850 0.98784 1.21420 0.98983 0.94237 1.00115 1.21246 0.99133 0.95598 0.97767 0.91246 0.92166 0.93787 0.77073 0.90556 0.90316 0.93540 0.87401 0.92610 0.93446 0.97585 0.97939 0.92036 0.89945 0.89741 0.85773 0.84595 0.84424 0.84523 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.52 9.54 71.98 0.69 -4.83 16 2 C 0.08 2.46 2.96 30.59 0.09 2.55 16 3 H 0.09 3.19 5.35 -2.39 -0.01 3.17 16 4 O -0.56 -13.89 10.36 -148.98 -1.54 -15.44 16 5 C 0.03 0.92 4.46 86.30 0.38 1.31 16 6 N -0.53 -14.75 4.60 -900.82 -4.15 -18.90 16 7 C 0.05 1.51 5.22 86.30 0.45 1.96 16 8 C 0.05 1.79 6.23 71.98 0.45 2.24 16 9 O -0.39 -16.89 6.96 -148.98 -1.04 -17.93 16 10 C 0.18 8.79 4.76 71.24 0.34 9.12 16 11 C -0.53 -31.34 9.99 25.60 0.26 -31.08 16 12 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 13 C 0.02 0.92 5.47 84.65 0.46 1.38 16 14 N -0.94 -58.59 13.96 21.45 0.30 -58.29 16 15 Si 0.95 43.49 27.47 68.60 1.88 45.38 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 19 C 0.07 1.53 5.03 85.55 0.43 1.96 16 20 C -0.08 -1.76 5.18 -19.87 -0.10 -1.86 16 21 C -0.13 -2.68 8.14 22.27 0.18 -2.49 16 22 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 23 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 24 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 25 C -0.12 -2.54 9.69 22.27 0.22 -2.32 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.38 6.90 7.28 -74.06 -0.54 6.36 16 30 H 0.08 3.10 5.96 -2.39 -0.01 3.09 16 31 H 0.08 2.25 5.24 -2.39 -0.01 2.24 16 32 H 0.05 1.36 5.35 -2.39 -0.01 1.35 16 33 H 0.11 2.30 7.72 -2.38 -0.02 2.28 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.01 0.31 7.20 -2.39 -0.02 0.29 16 37 H 0.00 0.14 7.57 -2.39 -0.02 0.12 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 39 H 0.08 1.67 7.62 -2.39 -0.02 1.65 16 40 H 0.08 1.92 4.72 -2.39 -0.01 1.91 16 41 H 0.12 2.24 5.67 -2.91 -0.02 2.23 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -68.04 349.88 0.36 -67.69 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.39 Total: 26.34 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 4.51 Total: -28.85 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -3.85 Total: -77.19 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -2.58 Total: -33.37 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Total: -68.04 0.36 -67.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570467204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.125 kcal (2) G-P(sol) polarization free energy of solvation -68.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds