Wall clock time and date at job start Tue Mar 31 2020 06:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00396 * 2 1 4 4 C 1.50702 * 109.46807 * 179.97438 * 3 2 1 5 5 C 1.34512 * 125.79079 * 90.00266 * 4 3 2 6 6 C 1.41385 * 106.83968 * 179.78844 * 5 4 3 7 7 C 1.34515 * 106.83909 * 0.37109 * 6 5 4 8 8 C 1.50704 * 125.78390 * 179.88761 * 7 6 5 9 9 N 1.46898 * 109.46923 * 89.71763 * 8 7 6 10 10 C 1.46847 * 110.99897 * 169.99458 * 9 8 7 11 11 C 1.53034 * 109.51345 * 174.16738 * 10 9 8 12 12 C 1.53099 * 109.29509 * 59.18740 * 11 10 9 13 13 C 1.52993 * 109.52781 * 182.43453 * 12 11 10 14 14 C 1.50699 * 109.47187 * 294.67655 * 13 12 11 15 15 H 1.07994 * 120.00054 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99439 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00836 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99406 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47146 * 90.00227 * 18 16 14 20 20 H 1.48500 * 109.46739 * 209.99951 * 18 16 14 21 21 H 1.48503 * 109.47013 * 329.99943 * 18 16 14 22 22 C 1.53126 * 109.15071 * 302.33888 * 12 11 10 23 23 C 1.46854 * 110.99958 * 45.78597 * 9 8 7 24 24 O 1.34295 * 108.42148 * 359.62771 * 7 6 5 25 25 H 1.09003 * 109.46615 * 59.99638 * 1 2 3 26 26 H 1.08993 * 109.47562 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46955 * 300.00660 * 1 2 3 28 28 H 1.08999 * 109.46917 * 59.99756 * 3 2 1 29 29 H 1.09003 * 109.47123 * 299.99679 * 3 2 1 30 30 H 1.07999 * 126.57981 * 0.04102 * 5 4 3 31 31 H 1.07994 * 126.57724 * 180.23534 * 6 5 4 32 32 H 1.08992 * 109.47568 * 329.71523 * 8 7 6 33 33 H 1.09001 * 109.46476 * 209.71507 * 8 7 6 34 34 H 1.09002 * 109.46481 * 294.17890 * 10 9 8 35 35 H 1.08994 * 109.46283 * 54.15743 * 10 9 8 36 36 H 1.09007 * 109.50453 * 179.12106 * 11 10 9 37 37 H 1.09009 * 109.50412 * 299.23146 * 11 10 9 38 38 H 1.09002 * 109.57693 * 62.27167 * 12 11 10 39 39 H 1.09004 * 109.47084 * 54.67770 * 13 12 11 40 40 H 1.09001 * 109.46990 * 174.67248 * 13 12 11 41 41 H 0.97004 * 120.00513 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.50076 * 297.71308 * 22 12 11 43 43 H 1.08998 * 109.53581 * 177.61293 * 22 12 11 44 44 H 1.08993 * 109.46229 * 305.85774 * 23 9 8 45 45 H 1.09008 * 109.45803 * 65.83386 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1862 0.0006 5 6 4.2973 1.1238 -1.0901 6 6 5.6305 1.0231 -0.6304 7 6 5.5801 1.0217 0.7138 8 6 6.7653 0.9277 1.6399 9 7 7.2597 2.2779 1.9409 10 6 8.2564 2.2452 3.0188 11 6 8.8535 3.6418 3.2055 12 6 7.7345 4.6285 3.5498 13 6 8.3167 6.0375 3.6780 14 6 9.2576 6.0872 4.8541 15 1 9.4234 5.2024 5.4507 16 6 9.9059 7.2626 5.1690 17 7 9.7029 8.3404 4.4434 18 14 11.0728 7.3240 6.6265 19 1 12.4451 6.9779 6.1768 20 1 11.0715 8.6920 7.2042 21 1 10.6293 6.3510 7.6570 22 6 6.6856 4.6076 2.4344 23 6 6.1511 3.1831 2.2700 24 8 4.2951 1.1239 1.0904 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6888 1.8463 -0.8900 30 1 3.9717 1.1502 -2.1195 31 1 6.5187 0.9575 -1.2413 32 1 7.5556 0.3497 1.1612 33 1 6.4651 0.4361 2.5653 34 1 7.7787 1.9275 3.9457 35 1 9.0488 1.5431 2.7596 36 1 9.5819 3.6208 4.0161 37 1 9.3434 3.9544 2.2833 38 1 7.2698 4.3392 4.4924 39 1 8.8597 6.2905 2.7673 40 1 7.5079 6.7524 3.8292 41 1 10.1593 9.1672 4.6648 42 1 7.1414 4.9353 1.5002 43 1 5.8650 5.2766 2.6933 44 1 5.4144 3.1620 1.4670 45 1 5.6834 2.8611 3.2005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573325178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:06 Heat of formation + Delta-G solvation = -39.884156 kcal Electronic energy + Delta-G solvation = -23422.779725 eV Core-core repulsion = 20020.582780 eV Total energy + Delta-G solvation = -3402.196946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.73914 -38.73362 -38.16067 -34.81071 -33.15545 -32.50803 -31.27496 -30.34584 -28.88801 -27.17909 -26.09232 -24.48118 -23.01548 -22.60371 -21.81910 -20.67447 -20.13130 -18.89069 -17.19146 -17.06394 -16.25245 -16.21365 -16.09303 -15.43607 -15.02894 -14.72307 -14.45019 -14.03793 -13.68919 -13.39391 -13.24366 -13.01240 -12.86884 -12.58755 -12.34632 -12.23849 -11.96866 -11.87391 -11.67277 -11.44855 -11.10005 -10.80416 -10.63923 -10.60135 -10.27381 -10.16100 -9.95699 -9.92738 -9.52381 -9.03506 -8.85088 -8.58416 -8.30694 -8.09310 -5.95262 -3.96730 1.46365 2.42462 2.69749 3.33762 3.40185 3.43059 3.65929 4.15497 4.43845 4.49084 4.64432 4.80473 4.89535 4.94075 4.98762 5.01639 5.22332 5.27183 5.35305 5.35814 5.39904 5.50925 5.61726 5.68965 5.75726 5.88169 5.91571 5.96736 5.98625 6.14993 6.27443 6.42256 6.45020 6.58377 6.65439 6.68348 6.99209 7.06563 7.12207 7.21428 7.26643 7.34495 7.73243 7.89871 8.05671 8.48668 9.09894 9.66597 11.16057 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.002710 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.615732 B =10329.882618 C =10709.709203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.144 3.856 4 C -0.026 4.026 5 C -0.180 4.180 6 C -0.196 4.196 7 C 0.009 3.991 8 C 0.131 3.869 9 N -0.531 5.531 10 C 0.055 3.945 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.111 4.111 23 C 0.059 3.941 24 O -0.170 6.170 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.017 0.983 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.591 -16.793 -10.521 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.068 3.932 4 C -0.076 4.076 5 C -0.200 4.200 6 C -0.216 4.216 7 C -0.042 4.042 8 C 0.004 3.996 9 N -0.257 5.257 10 C -0.072 4.072 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.148 4.148 23 C -0.069 4.069 24 O -0.067 6.067 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.306 -16.582 -10.635 24.346 hybrid contribution 0.094 0.074 1.289 1.295 sum -14.212 -16.508 -9.346 23.703 Atomic orbital electron populations 1.22789 0.80302 1.03164 1.00300 1.87984 1.20083 1.27093 1.95503 1.20644 0.84698 0.85535 1.02283 1.21769 0.92378 1.08932 0.84551 1.21604 0.92867 1.06291 0.99215 1.21562 0.98014 1.08198 0.93795 1.22299 0.82731 1.04371 0.94794 1.20657 0.90386 0.92425 0.96106 1.62220 1.14120 1.06497 1.42824 1.22247 0.94096 0.99858 0.90964 1.21546 0.98365 0.91665 1.02098 1.21241 0.94262 0.98843 0.95696 1.19113 0.95460 0.89414 0.96893 1.21255 1.25230 0.95872 1.12857 0.92707 1.25022 0.97021 0.95862 0.96625 1.69962 1.43246 1.00920 1.39440 0.86653 0.81456 0.77190 0.83045 1.20717 1.21334 1.19979 1.21687 0.99041 0.93674 1.00430 1.22166 0.92044 0.93993 0.98683 1.83988 1.16831 1.70933 1.34918 0.93728 0.89282 0.93695 0.91395 0.89943 0.83413 0.83100 0.87689 0.93335 0.95138 0.91247 0.90681 0.91705 0.93036 0.96491 0.96788 0.93112 0.91591 0.92195 0.91605 0.95305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.98 10.69 -35.23 -0.38 -4.36 16 3 C 0.14 1.35 6.47 36.01 0.23 1.58 16 4 C -0.03 -0.32 6.95 -35.62 -0.25 -0.57 16 5 C -0.18 -2.08 10.81 -39.70 -0.43 -2.51 16 6 C -0.20 -2.39 10.81 -39.70 -0.43 -2.82 16 7 C 0.01 0.11 5.00 -35.62 -0.18 -0.06 16 8 C 0.13 1.64 5.81 -4.98 -0.03 1.61 16 9 N -0.53 -7.93 4.80 -236.11 -1.13 -9.06 16 10 C 0.06 0.84 5.43 -3.84 -0.02 0.82 16 11 C -0.10 -1.85 5.15 -26.66 -0.14 -1.99 16 12 C -0.08 -1.69 2.20 -90.51 -0.20 -1.89 16 13 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 14 C -0.51 -14.38 8.44 -34.44 -0.29 -14.67 16 15 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.11 -2.01 5.38 -26.65 -0.14 -2.15 16 23 C 0.06 0.94 4.98 -3.83 -0.02 0.92 16 24 O -0.17 -2.39 9.87 5.73 0.06 -2.34 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.07 1.48 7.05 -51.93 -0.37 1.11 16 37 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.04 6.02 -51.93 -0.31 0.73 16 45 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -31.93 362.62 -9.06 -41.00 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.79 Total: -2.70 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.00 Total: -18.34 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.40 Total: -35.43 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.32 Total: -6.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.93 -9.06 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573325178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.114 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds