Wall clock time and date at job start Tue Mar 31 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00396 * 2 1 4 4 C 1.50702 * 109.46807 * 179.97438 * 3 2 1 5 5 C 1.34512 * 125.79079 * 90.00266 * 4 3 2 6 6 C 1.41385 * 106.83968 * 179.78844 * 5 4 3 7 7 C 1.34515 * 106.83909 * 0.37109 * 6 5 4 8 8 C 1.50704 * 125.78390 * 179.88761 * 7 6 5 9 9 N 1.46898 * 109.46923 * 89.71763 * 8 7 6 10 10 C 1.46847 * 110.99897 * 169.99458 * 9 8 7 11 11 C 1.53034 * 109.51345 * 174.16738 * 10 9 8 12 12 C 1.53099 * 109.29509 * 59.18740 * 11 10 9 13 13 C 1.52993 * 109.52781 * 182.43453 * 12 11 10 14 14 C 1.50699 * 109.47187 * 294.67655 * 13 12 11 15 15 H 1.07994 * 120.00054 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99439 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00836 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99406 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47146 * 90.00227 * 18 16 14 20 20 H 1.48500 * 109.46739 * 209.99951 * 18 16 14 21 21 H 1.48503 * 109.47013 * 329.99943 * 18 16 14 22 22 C 1.53126 * 109.15071 * 302.33888 * 12 11 10 23 23 C 1.46854 * 110.99958 * 45.78597 * 9 8 7 24 24 O 1.34295 * 108.42148 * 359.62771 * 7 6 5 25 25 H 1.09003 * 109.46615 * 59.99638 * 1 2 3 26 26 H 1.08993 * 109.47562 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46955 * 300.00660 * 1 2 3 28 28 H 1.08999 * 109.46917 * 59.99756 * 3 2 1 29 29 H 1.09003 * 109.47123 * 299.99679 * 3 2 1 30 30 H 1.07999 * 126.57981 * 0.04102 * 5 4 3 31 31 H 1.07994 * 126.57724 * 180.23534 * 6 5 4 32 32 H 1.08992 * 109.47568 * 329.71523 * 8 7 6 33 33 H 1.09001 * 109.46476 * 209.71507 * 8 7 6 34 34 H 1.09002 * 109.46481 * 294.17890 * 10 9 8 35 35 H 1.08994 * 109.46283 * 54.15743 * 10 9 8 36 36 H 1.09007 * 109.50453 * 179.12106 * 11 10 9 37 37 H 1.09009 * 109.50412 * 299.23146 * 11 10 9 38 38 H 1.09002 * 109.57693 * 62.27167 * 12 11 10 39 39 H 1.09004 * 109.47084 * 54.67770 * 13 12 11 40 40 H 1.09001 * 109.46990 * 174.67248 * 13 12 11 41 41 H 0.97004 * 120.00513 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.50076 * 297.71308 * 22 12 11 43 43 H 1.08998 * 109.53581 * 177.61293 * 22 12 11 44 44 H 1.08993 * 109.46229 * 305.85774 * 23 9 8 45 45 H 1.09008 * 109.45803 * 65.83386 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1862 0.0006 5 6 4.2973 1.1238 -1.0901 6 6 5.6305 1.0231 -0.6304 7 6 5.5801 1.0217 0.7138 8 6 6.7653 0.9277 1.6399 9 7 7.2597 2.2779 1.9409 10 6 8.2564 2.2452 3.0188 11 6 8.8535 3.6418 3.2055 12 6 7.7345 4.6285 3.5498 13 6 8.3167 6.0375 3.6780 14 6 9.2576 6.0872 4.8541 15 1 9.4234 5.2024 5.4507 16 6 9.9059 7.2626 5.1690 17 7 9.7029 8.3404 4.4434 18 14 11.0728 7.3240 6.6265 19 1 12.4451 6.9779 6.1768 20 1 11.0715 8.6920 7.2042 21 1 10.6293 6.3510 7.6570 22 6 6.6856 4.6076 2.4344 23 6 6.1511 3.1831 2.2700 24 8 4.2951 1.1239 1.0904 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6888 1.8463 -0.8900 30 1 3.9717 1.1502 -2.1195 31 1 6.5187 0.9575 -1.2413 32 1 7.5556 0.3497 1.1612 33 1 6.4651 0.4361 2.5653 34 1 7.7787 1.9275 3.9457 35 1 9.0488 1.5431 2.7596 36 1 9.5819 3.6208 4.0161 37 1 9.3434 3.9544 2.2833 38 1 7.2698 4.3392 4.4924 39 1 8.8597 6.2905 2.7673 40 1 7.5079 6.7524 3.8292 41 1 10.1593 9.1672 4.6648 42 1 7.1414 4.9353 1.5002 43 1 5.8650 5.2766 2.6933 44 1 5.4144 3.1620 1.4670 45 1 5.6834 2.8611 3.2005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573325178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:05 Heat of formation + Delta-G solvation = -59.679407 kcal Electronic energy + Delta-G solvation = -23423.638112 eV Core-core repulsion = 20020.582780 eV Total energy + Delta-G solvation = -3403.055332 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.65205 -40.07110 -38.83046 -36.39558 -34.48089 -34.00794 -32.37519 -31.73036 -30.22508 -28.36049 -27.01017 -25.84401 -24.35706 -23.99608 -22.82378 -22.16795 -21.09285 -20.45492 -18.43275 -17.98923 -17.91558 -17.16864 -16.71811 -16.53396 -16.34748 -16.10192 -15.86165 -15.13035 -14.98868 -14.73302 -14.54331 -14.17391 -14.04436 -13.76549 -13.59421 -13.29359 -13.28178 -13.01363 -12.89372 -12.70346 -12.59238 -12.39956 -12.36625 -12.13094 -12.06081 -11.68258 -11.27746 -10.90940 -10.86387 -10.76423 -10.71859 -10.51652 -9.55651 -9.20965 -8.16386 -6.26148 0.56498 1.40429 1.41667 1.52363 1.55109 1.85128 2.42507 2.96830 3.03692 3.16753 3.60323 3.87333 3.97017 4.02718 4.07096 4.09821 4.16396 4.24918 4.34058 4.42200 4.49327 4.52037 4.55979 4.60860 4.64066 4.73175 4.81516 4.83443 4.85969 4.90549 5.04596 5.06181 5.09662 5.14238 5.35616 5.39490 5.46776 5.57405 5.57433 5.79846 5.88754 6.03404 6.07797 6.09099 6.19711 6.30405 6.89934 7.42203 8.95631 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.002710 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.615732 B =10329.882618 C =10709.709203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.143 3.857 4 C -0.040 4.040 5 C -0.187 4.187 6 C -0.198 4.198 7 C -0.013 4.013 8 C 0.135 3.865 9 N -0.539 5.539 10 C 0.065 3.935 11 C -0.094 4.094 12 C -0.075 4.075 13 C 0.034 3.966 14 C -0.528 4.528 15 H 0.062 0.938 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.263 1.263 22 C -0.105 4.105 23 C 0.072 3.928 24 O -0.191 6.191 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.130 0.870 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.047 0.953 39 H -0.011 1.011 40 H -0.017 1.017 41 H 0.262 0.738 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.756 -18.658 -10.599 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.068 3.932 4 C -0.090 4.090 5 C -0.206 4.206 6 C -0.218 4.218 7 C -0.063 4.063 8 C 0.008 3.992 9 N -0.264 5.264 10 C -0.063 4.063 11 C -0.132 4.132 12 C -0.093 4.093 13 C -0.003 4.003 14 C -0.566 4.566 15 H 0.080 0.920 16 C -0.201 4.201 17 N -0.577 5.577 18 Si 0.787 3.213 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.143 4.143 23 C -0.056 4.056 24 O -0.088 6.088 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.188 0.812 31 H 0.183 0.817 32 H 0.148 0.852 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.007 0.993 40 H 0.002 0.998 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.481 -18.471 -10.717 25.802 hybrid contribution 0.071 0.672 1.247 1.418 sum -14.410 -17.799 -9.471 24.782 Atomic orbital electron populations 1.22995 0.78415 1.04212 1.01467 1.87930 1.22198 1.27641 1.95750 1.20819 0.83145 0.85580 1.03704 1.22431 0.93700 1.08453 0.84382 1.21945 0.92585 1.05870 1.00230 1.21871 0.98922 1.07259 0.93734 1.22491 0.82761 1.05701 0.95375 1.20744 0.90985 0.90868 0.96562 1.62171 1.13753 1.08014 1.42491 1.22128 0.94906 0.97680 0.91539 1.21424 0.97338 0.93505 1.00930 1.21086 0.95524 0.96159 0.96555 1.18998 0.94106 0.92030 0.95131 1.21642 1.25415 0.96214 1.13348 0.91980 1.25978 0.98919 0.95449 0.99737 1.70106 1.44550 1.01622 1.41414 0.85495 0.79143 0.77387 0.79312 1.19737 1.21062 1.18743 1.21580 0.98165 0.95701 0.98814 1.21951 0.92348 0.92504 0.98762 1.83969 1.17405 1.71429 1.36028 0.92046 0.88383 0.93020 0.91033 0.87408 0.81231 0.81660 0.85242 0.92804 0.94650 0.88386 0.91855 0.92913 0.93458 0.99305 0.99829 0.92965 0.92582 0.92441 0.91243 0.95440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.99 10.69 -148.98 -1.59 -9.58 16 3 C 0.14 2.46 6.47 71.24 0.46 2.92 16 4 C -0.04 -0.93 6.95 24.83 0.17 -0.76 16 5 C -0.19 -3.99 10.81 22.19 0.24 -3.75 16 6 C -0.20 -4.48 10.81 22.19 0.24 -4.24 16 7 C -0.01 -0.33 5.00 24.83 0.12 -0.21 16 8 C 0.13 3.05 5.81 85.56 0.50 3.55 16 9 N -0.54 -15.13 4.80 -900.93 -4.32 -19.46 16 10 C 0.06 1.83 5.43 86.32 0.47 2.30 16 11 C -0.09 -3.49 5.15 30.64 0.16 -3.34 16 12 C -0.07 -3.15 2.20 -10.72 -0.02 -3.17 16 13 C 0.03 1.85 4.45 29.85 0.13 1.99 16 14 C -0.53 -30.11 8.44 25.60 0.22 -29.89 16 15 H 0.06 3.37 7.08 -2.91 -0.02 3.35 16 16 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 17 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 18 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.10 -3.87 5.38 30.65 0.16 -3.70 16 23 C 0.07 2.25 4.98 86.32 0.43 2.68 16 24 O -0.19 -5.19 9.87 -2.42 -0.02 -5.21 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.17 8.08 -2.39 -0.02 1.16 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 2.27 8.12 -2.39 -0.02 2.25 16 36 H 0.06 2.47 7.05 -2.38 -0.02 2.46 16 37 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.07 2.14 6.02 -2.39 -0.01 2.13 16 45 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -69.90 362.62 2.30 -67.60 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.94 Total: 11.49 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 4.99 Total: -33.86 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -4.04 Total: -77.17 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.62 Total: -14.79 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -69.90 2.30 -67.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573325178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.920 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds