Wall clock time and date at job start Tue Mar 31 2020 06:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86798 * 120.00297 * 2 1 4 4 H 1.48503 * 109.47007 * 269.99764 * 3 2 1 5 5 H 1.48501 * 109.47100 * 29.99395 * 3 2 1 6 6 H 1.48497 * 109.47441 * 149.99745 * 3 2 1 7 7 C 1.37882 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99884 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47082 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47127 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46916 * 304.99400 * 11 10 9 13 13 N 1.46900 * 109.47524 * 64.99598 * 11 10 9 14 14 C 1.50704 * 109.47147 * 184.99886 * 11 10 9 15 15 N 1.31134 * 126.55364 * 105.24572 * 14 11 10 16 16 C 1.34488 * 105.61723 * 180.12292 * 15 14 11 17 17 C 1.50693 * 126.29083 * 179.90473 * 16 15 14 18 18 C 1.54236 * 109.63123 * 239.71340 * 17 16 15 19 19 C 1.45546 * 112.40892 * 160.29310 * 18 17 16 20 20 C 1.54248 * 112.39985 * 61.93871 * 19 18 17 21 21 C 1.50476 * 108.52488 * 280.01810 * 20 19 18 22 22 C 1.54061 * 112.50196 * 94.14853 * 21 20 19 23 23 C 1.50473 * 109.62820 * 120.68490 * 17 16 15 24 24 N 1.29954 * 107.42408 * 359.64506 * 16 15 14 25 25 O 1.21300 * 110.24809 * 0.22153 * 24 16 15 26 26 H 0.97006 * 120.00158 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47431 * 59.99763 * 9 7 2 28 28 H 1.08998 * 109.46694 * 299.99254 * 9 7 2 29 29 H 1.08994 * 109.47341 * 59.99291 * 10 9 7 30 30 H 1.09007 * 109.47108 * 299.99483 * 10 9 7 31 31 H 1.00904 * 110.99386 * 60.00135 * 13 11 10 32 32 H 1.00899 * 111.00185 * 183.95128 * 13 11 10 33 33 H 1.08999 * 109.78470 * 0.20154 * 17 16 15 34 34 H 1.09003 * 108.89060 * 39.54480 * 18 17 16 35 35 H 1.08996 * 108.89676 * 281.04974 * 18 17 16 36 36 H 1.08995 * 108.89611 * 182.69184 * 19 18 17 37 37 H 1.08994 * 108.89692 * 301.18848 * 19 18 17 38 38 H 1.08999 * 109.62878 * 39.72432 * 20 19 18 39 39 H 1.08993 * 109.62768 * 160.31065 * 20 19 18 40 40 H 1.09003 * 108.87444 * 333.36987 * 21 20 19 41 41 H 1.09003 * 108.79827 * 214.87747 * 21 20 19 42 42 H 1.08997 * 108.81642 * 197.42430 * 22 21 20 43 43 H 1.08999 * 108.81386 * 79.14549 * 22 21 20 44 44 H 1.08998 * 108.87927 * 334.64076 * 23 17 16 45 45 H 1.09003 * 108.88056 * 93.08889 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 1 0.7884 -5.0068 0.8433 13 7 0.7279 -5.1189 -1.2537 14 6 2.4549 -6.1298 0.1250 15 7 2.6734 -6.8577 1.1937 16 6 3.6184 -7.7465 0.8394 17 6 4.2182 -8.8102 1.7223 18 6 5.7411 -8.5930 1.8339 19 6 6.3138 -9.2631 2.9921 20 6 6.1353 -10.7941 2.9333 21 6 4.7355 -11.1294 3.3719 22 6 3.7606 -11.2573 2.1858 23 6 3.9719 -10.1663 1.1185 24 7 3.9155 -7.5231 -0.4058 25 8 3.2580 -6.5984 -0.8349 26 1 -0.4851 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8719 -3.6043 0.8904 30 1 2.8718 -3.6044 -0.8896 31 1 1.3475 -5.1034 -2.0499 32 1 0.1636 -5.9553 -1.2508 33 1 3.7681 -8.7637 2.7139 34 1 5.9405 -7.5241 1.9103 35 1 6.2193 -8.9759 0.9324 36 1 7.3781 -9.0334 3.0423 37 1 5.8302 -8.8857 3.8931 38 1 6.2922 -11.1420 1.9123 39 1 6.8524 -11.2722 3.6004 40 1 4.3778 -10.3455 4.0395 41 1 4.7546 -12.0737 3.9161 42 1 2.7396 -11.1889 2.5611 43 1 3.8976 -12.2340 1.7219 44 1 3.0854 -10.1151 0.4863 45 1 4.8279 -10.4382 0.5009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573721826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:40 Heat of formation + Delta-G solvation = 30.323802 kcal Electronic energy + Delta-G solvation = -23506.722650 eV Core-core repulsion = 20139.862901 eV Total energy + Delta-G solvation = -3366.859749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.47455 -39.43693 -36.70961 -35.71324 -33.29508 -32.82660 -32.73899 -30.94044 -30.26729 -26.53986 -26.00200 -24.95236 -24.15368 -23.22339 -21.81356 -20.66434 -20.10987 -19.23969 -17.85801 -17.54542 -16.27645 -16.11189 -15.94524 -15.23353 -15.08619 -14.97569 -14.37755 -14.22142 -14.03260 -13.68111 -13.43170 -12.74460 -12.60009 -12.46255 -12.39782 -12.08106 -11.83141 -11.62368 -11.34225 -11.11566 -11.01143 -10.96780 -10.90612 -10.77816 -10.73183 -10.61998 -10.56239 -10.48814 -9.95904 -9.82576 -9.36410 -9.03049 -8.82287 -8.28284 -5.95319 -3.97448 1.24383 2.30673 2.94525 3.34844 3.41168 3.44314 3.54887 4.02676 4.30286 4.34409 4.49802 4.55403 4.71582 4.76514 4.85966 4.86976 4.95975 4.99710 5.08997 5.31322 5.40203 5.42707 5.44913 5.54032 5.64380 5.68576 5.73069 5.78446 5.84196 5.85016 5.87121 5.88721 5.97775 6.03571 6.09883 6.14884 6.40570 6.56986 7.00435 7.16608 7.51188 7.74447 7.92077 8.08928 8.27037 8.45655 9.09845 9.65839 11.15648 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.002797 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.572213 B =10007.594031 C =10545.234306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.101 4.101 11 C 0.185 3.815 12 H 0.124 0.876 13 N -0.812 5.812 14 C 0.159 3.841 15 N -0.485 5.485 16 C 0.172 3.828 17 C 0.010 3.990 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.109 4.109 24 N -0.388 5.388 25 O 0.070 5.930 26 H 0.260 0.740 27 H 0.037 0.963 28 H 0.016 0.984 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.349 0.651 32 H 0.340 0.660 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.650 -23.271 3.802 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.070 3.930 12 H 0.142 0.858 13 N -0.341 5.341 14 C -0.064 4.064 15 N -0.219 5.219 16 C -0.101 4.101 17 C -0.010 4.010 18 C -0.145 4.145 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.147 4.147 24 N -0.098 5.098 25 O 0.014 5.986 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.657 -23.052 3.970 24.942 hybrid contribution 0.927 0.232 -0.187 0.973 sum 9.584 -22.820 3.784 25.039 Atomic orbital electron populations 1.69966 1.05947 1.26488 1.50730 1.24980 0.94813 0.99072 0.95416 0.86640 0.79847 0.83703 0.78066 1.20700 1.21263 1.19995 1.21245 0.92929 0.91196 1.50756 0.92926 1.19016 0.93474 0.89595 0.98439 1.21837 0.99258 0.91712 1.01207 1.20837 0.89377 0.87398 0.95353 0.85826 1.58825 1.27084 1.45013 1.03162 1.31210 0.94289 0.98326 0.82553 1.71932 1.16272 1.06942 1.26718 1.25820 0.94946 0.98691 0.90655 1.19287 0.95501 0.89238 0.97013 1.20487 0.92974 1.01299 0.99787 1.20483 1.01094 0.95395 0.98558 1.21373 0.96714 0.95647 1.01930 1.21386 0.95006 1.01780 0.97811 1.21886 0.99491 0.98126 0.95683 1.21358 1.02419 0.92761 0.98192 1.74552 1.16136 1.05203 1.13866 1.85255 1.39368 1.34885 1.39083 0.93048 0.94464 0.96567 0.92362 0.92435 0.83709 0.84756 0.87861 0.91922 0.91374 0.91740 0.91720 0.91505 0.91826 0.91797 0.92152 0.91980 0.91895 0.92179 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 10 C -0.10 -1.99 4.78 -26.73 -0.13 -2.12 16 11 C 0.19 2.98 3.29 -68.86 -0.23 2.75 16 12 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 13 N -0.81 -11.69 8.68 -5.65 -0.05 -11.74 16 14 C 0.16 2.50 7.31 -13.05 -0.10 2.41 16 15 N -0.49 -7.83 11.55 -9.87 -0.11 -7.95 16 16 C 0.17 2.51 6.37 -156.38 -1.00 1.52 16 17 C 0.01 0.11 2.34 -92.39 -0.22 -0.11 16 18 C -0.11 -1.06 4.67 -29.60 -0.14 -1.20 16 19 C -0.12 -0.92 5.26 -29.59 -0.16 -1.08 16 20 C -0.12 -0.80 5.61 -27.34 -0.15 -0.96 16 21 C -0.12 -0.83 5.31 -27.44 -0.15 -0.98 16 22 C -0.11 -0.86 5.85 -25.62 -0.15 -1.01 16 23 C -0.11 -1.03 4.88 -27.43 -0.13 -1.17 16 24 N -0.39 -6.01 12.16 30.90 0.38 -5.64 16 25 O 0.07 1.10 11.29 18.11 0.20 1.31 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.35 4.67 8.97 -39.29 -0.35 4.31 16 32 H 0.34 4.03 9.06 -39.29 -0.36 3.67 16 33 H 0.10 1.12 6.98 -51.93 -0.36 0.76 16 34 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 35 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 38 H 0.07 0.46 6.98 -51.93 -0.36 0.10 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.46 6.63 -51.93 -0.34 0.12 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 45 H 0.07 0.64 6.63 -51.93 -0.34 0.30 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -30.73 355.87 -9.05 -39.78 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.46 Total: 2.79 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.09 Total: -14.63 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.95 Total: -51.22 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.73 -9.05 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573721826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.106 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds