Wall clock time and date at job start Tue Mar 31 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86798 * 120.00297 * 2 1 4 4 H 1.48503 * 109.47007 * 269.99764 * 3 2 1 5 5 H 1.48501 * 109.47100 * 29.99395 * 3 2 1 6 6 H 1.48497 * 109.47441 * 149.99745 * 3 2 1 7 7 C 1.37882 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99884 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47082 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47127 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46916 * 304.99400 * 11 10 9 13 13 N 1.46900 * 109.47524 * 64.99598 * 11 10 9 14 14 C 1.50704 * 109.47147 * 184.99886 * 11 10 9 15 15 N 1.31134 * 126.55364 * 105.24572 * 14 11 10 16 16 C 1.34488 * 105.61723 * 180.12292 * 15 14 11 17 17 C 1.50693 * 126.29083 * 179.90473 * 16 15 14 18 18 C 1.54236 * 109.63123 * 239.71340 * 17 16 15 19 19 C 1.45546 * 112.40892 * 160.29310 * 18 17 16 20 20 C 1.54248 * 112.39985 * 61.93871 * 19 18 17 21 21 C 1.50476 * 108.52488 * 280.01810 * 20 19 18 22 22 C 1.54061 * 112.50196 * 94.14853 * 21 20 19 23 23 C 1.50473 * 109.62820 * 120.68490 * 17 16 15 24 24 N 1.29954 * 107.42408 * 359.64506 * 16 15 14 25 25 O 1.21300 * 110.24809 * 0.22153 * 24 16 15 26 26 H 0.97006 * 120.00158 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47431 * 59.99763 * 9 7 2 28 28 H 1.08998 * 109.46694 * 299.99254 * 9 7 2 29 29 H 1.08994 * 109.47341 * 59.99291 * 10 9 7 30 30 H 1.09007 * 109.47108 * 299.99483 * 10 9 7 31 31 H 1.00904 * 110.99386 * 60.00135 * 13 11 10 32 32 H 1.00899 * 111.00185 * 183.95128 * 13 11 10 33 33 H 1.08999 * 109.78470 * 0.20154 * 17 16 15 34 34 H 1.09003 * 108.89060 * 39.54480 * 18 17 16 35 35 H 1.08996 * 108.89676 * 281.04974 * 18 17 16 36 36 H 1.08995 * 108.89611 * 182.69184 * 19 18 17 37 37 H 1.08994 * 108.89692 * 301.18848 * 19 18 17 38 38 H 1.08999 * 109.62878 * 39.72432 * 20 19 18 39 39 H 1.08993 * 109.62768 * 160.31065 * 20 19 18 40 40 H 1.09003 * 108.87444 * 333.36987 * 21 20 19 41 41 H 1.09003 * 108.79827 * 214.87747 * 21 20 19 42 42 H 1.08997 * 108.81642 * 197.42430 * 22 21 20 43 43 H 1.08999 * 108.81386 * 79.14549 * 22 21 20 44 44 H 1.08998 * 108.87927 * 334.64076 * 23 17 16 45 45 H 1.09003 * 108.88056 * 93.08889 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 1 0.7884 -5.0068 0.8433 13 7 0.7279 -5.1189 -1.2537 14 6 2.4549 -6.1298 0.1250 15 7 2.6734 -6.8577 1.1937 16 6 3.6184 -7.7465 0.8394 17 6 4.2182 -8.8102 1.7223 18 6 5.7411 -8.5930 1.8339 19 6 6.3138 -9.2631 2.9921 20 6 6.1353 -10.7941 2.9333 21 6 4.7355 -11.1294 3.3719 22 6 3.7606 -11.2573 2.1858 23 6 3.9719 -10.1663 1.1185 24 7 3.9155 -7.5231 -0.4058 25 8 3.2580 -6.5984 -0.8349 26 1 -0.4851 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8719 -3.6043 0.8904 30 1 2.8718 -3.6044 -0.8896 31 1 1.3475 -5.1034 -2.0499 32 1 0.1636 -5.9553 -1.2508 33 1 3.7681 -8.7637 2.7139 34 1 5.9405 -7.5241 1.9103 35 1 6.2193 -8.9759 0.9324 36 1 7.3781 -9.0334 3.0423 37 1 5.8302 -8.8857 3.8931 38 1 6.2922 -11.1420 1.9123 39 1 6.8524 -11.2722 3.6004 40 1 4.3778 -10.3455 4.0395 41 1 4.7546 -12.0737 3.9161 42 1 2.7396 -11.1889 2.5611 43 1 3.8976 -12.2340 1.7219 44 1 3.0854 -10.1151 0.4863 45 1 4.8279 -10.4382 0.5009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573721826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:39 Heat of formation + Delta-G solvation = 10.141005 kcal Electronic energy + Delta-G solvation = -23507.597842 eV Core-core repulsion = 20139.862901 eV Total energy + Delta-G solvation = -3367.734941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.69745 -40.17703 -38.13494 -36.85092 -35.14637 -33.89311 -33.47770 -32.23177 -31.82592 -28.23054 -26.85800 -25.81530 -25.58995 -24.43468 -23.11838 -21.92838 -21.14152 -20.08572 -19.09433 -18.81934 -18.27472 -17.28967 -16.93973 -16.58227 -16.19233 -15.94457 -15.65470 -15.50808 -14.94403 -14.47422 -14.29567 -14.11731 -14.10333 -13.78380 -13.48292 -13.33252 -13.13648 -12.85295 -12.79668 -12.48440 -12.43718 -12.21014 -12.08483 -11.88135 -11.72463 -11.65979 -11.47706 -11.39936 -11.31604 -11.19563 -11.12854 -10.83424 -10.48944 -10.01794 -8.13268 -6.22895 -0.00152 1.10844 1.43234 1.43763 1.54409 1.67653 2.42905 2.47893 2.92915 3.20283 3.45888 3.53660 3.61212 3.75822 3.99784 4.06762 4.08740 4.16515 4.25273 4.28308 4.32434 4.40424 4.44565 4.61490 4.72168 4.80769 4.87896 4.92858 4.96690 5.00771 5.01584 5.09689 5.18215 5.21589 5.27958 5.31591 5.33290 5.42445 5.54471 5.58333 5.83362 5.97830 5.99236 6.30757 6.45416 6.95074 7.04737 7.44997 8.98025 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.002797 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.572213 B =10007.594031 C =10545.234306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.088 4.088 11 C 0.201 3.799 12 H 0.123 0.877 13 N -0.818 5.818 14 C 0.162 3.838 15 N -0.501 5.501 16 C 0.173 3.827 17 C 0.009 3.991 18 C -0.099 4.099 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.110 4.110 23 C -0.103 4.103 24 N -0.398 5.398 25 O 0.067 5.933 26 H 0.262 0.738 27 H 0.018 0.982 28 H -0.008 1.008 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.356 0.644 32 H 0.356 0.644 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 -24.382 4.183 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.127 4.127 11 C 0.085 3.915 12 H 0.140 0.860 13 N -0.349 5.349 14 C -0.061 4.061 15 N -0.235 5.235 16 C -0.100 4.100 17 C -0.012 4.012 18 C -0.138 4.138 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.148 4.148 23 C -0.142 4.142 24 N -0.109 5.109 25 O 0.012 5.988 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.978 -24.176 4.335 26.511 hybrid contribution 0.501 0.545 -0.314 0.804 sum 10.479 -23.631 4.021 26.161 Atomic orbital electron populations 1.70089 1.07542 1.27541 1.51678 1.25863 0.95697 1.02916 0.95003 0.85560 0.78660 0.79080 0.78405 1.19854 1.20842 1.19128 1.21709 0.93353 0.92713 1.50439 0.92698 1.18818 0.93776 0.90878 0.96250 1.21541 0.98165 0.91848 1.01179 1.20417 0.88983 0.85877 0.96207 0.85953 1.58777 1.27194 1.46207 1.02681 1.30970 0.94155 0.98297 0.82683 1.71947 1.16986 1.07558 1.26971 1.26448 0.94151 0.98661 0.90713 1.19507 0.96078 0.89084 0.96481 1.20452 0.92117 1.00367 1.00839 1.20476 1.01367 0.96216 0.97394 1.21359 0.97023 0.94589 1.02330 1.21392 0.94744 1.02386 0.97403 1.21870 0.99712 0.97783 0.95433 1.21317 1.01787 0.92410 0.98655 1.74544 1.16481 1.05462 1.14383 1.85244 1.39398 1.35052 1.39071 0.92883 0.96340 0.98955 0.92805 0.92026 0.82932 0.82909 0.87663 0.93808 0.91429 0.90909 0.91725 0.91492 0.90444 0.92268 0.90770 0.92130 0.90649 0.93697 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 2 C 0.00 0.18 5.46 84.66 0.46 0.65 16 3 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.40 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.04 2.03 4.86 29.85 0.15 2.18 16 10 C -0.09 -3.49 4.78 30.59 0.15 -3.35 16 11 C 0.20 6.41 3.29 44.17 0.15 6.56 16 12 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 13 N -0.82 -23.18 8.68 -171.80 -1.49 -24.67 16 14 C 0.16 5.04 7.31 88.38 0.65 5.68 16 15 N -0.50 -15.98 11.55 -303.19 -3.50 -19.49 16 16 C 0.17 4.98 6.37 138.46 0.88 5.87 16 17 C 0.01 0.18 2.34 -11.94 -0.03 0.15 16 18 C -0.10 -1.88 4.67 28.74 0.13 -1.75 16 19 C -0.12 -1.64 5.26 28.74 0.15 -1.48 16 20 C -0.12 -1.28 5.61 30.20 0.17 -1.11 16 21 C -0.12 -1.38 5.31 30.14 0.16 -1.22 16 22 C -0.11 -1.44 5.85 31.32 0.18 -1.26 16 23 C -0.10 -1.84 4.88 30.14 0.15 -1.69 16 24 N -0.40 -12.15 12.16 -60.31 -0.73 -12.88 16 25 O 0.07 2.06 11.29 74.86 0.85 2.91 16 26 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 27 H 0.02 0.99 7.75 -2.39 -0.02 0.97 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.36 9.29 8.97 -89.69 -0.80 8.49 16 32 H 0.36 8.14 9.06 -89.69 -0.81 7.33 16 33 H 0.11 2.20 6.98 -2.39 -0.02 2.19 16 34 H 0.04 0.98 7.96 -2.39 -0.02 0.96 16 35 H 0.07 1.28 7.47 -2.39 -0.02 1.26 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.92 7.47 -2.39 -0.02 0.90 16 38 H 0.07 0.76 6.98 -2.39 -0.02 0.75 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.74 6.63 -2.39 -0.02 0.72 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.04 0.93 7.70 -2.39 -0.02 0.91 16 45 H 0.07 1.24 6.63 -2.39 -0.02 1.22 16 Total: -1.00 -65.35 355.87 0.39 -64.97 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.62 Total: 19.82 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 3.58 Total: -21.17 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -5.44 Total: -112.85 kcal Atomic # 8 Polarization: 2.06 SS G_CDS: 0.85 Total: 2.91 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -65.35 0.39 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573721826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.110 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds