Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00213 * 2 1 4 4 C 1.53002 * 109.46971 * 293.95338 * 3 2 1 5 5 C 1.53003 * 109.47430 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47371 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99560 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99923 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99772 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47381 * 60.00124 * 10 8 6 12 12 H 1.48494 * 109.46838 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46987 * 300.00049 * 10 8 6 14 14 C 1.46903 * 111.00100 * 123.95116 * 2 1 3 15 15 H 1.08998 * 109.46970 * 294.44446 * 14 2 1 16 16 C 1.53003 * 109.47087 * 54.44073 * 14 2 1 17 17 C 1.53002 * 109.46980 * 60.00082 * 16 14 2 18 18 C 1.52997 * 109.47085 * 60.00220 * 17 16 14 19 19 H 1.08999 * 109.47417 * 59.99826 * 18 17 16 20 20 C 1.53002 * 109.47085 * 179.97438 * 18 17 16 21 21 F 1.39908 * 109.46796 * 179.97438 * 20 18 17 22 22 F 1.39893 * 109.47198 * 299.99579 * 20 18 17 23 23 F 1.39904 * 109.46921 * 60.00089 * 20 18 17 24 24 C 1.53003 * 109.47032 * 299.99749 * 18 17 16 25 25 C 1.52997 * 109.47405 * 174.44114 * 14 2 1 26 26 H 1.09002 * 109.47456 * 289.60323 * 1 2 3 27 27 H 1.09005 * 109.47037 * 49.59709 * 1 2 3 28 28 H 1.09000 * 109.47302 * 169.60053 * 1 2 3 29 29 H 1.08998 * 109.47358 * 53.95010 * 3 2 1 30 30 H 1.09000 * 109.47656 * 173.95471 * 3 2 1 31 31 H 1.09004 * 109.47231 * 299.99962 * 4 3 2 32 32 H 1.09001 * 109.47332 * 59.99501 * 4 3 2 33 33 H 1.09004 * 109.46689 * 300.00057 * 5 4 3 34 34 H 1.09001 * 109.46963 * 59.99513 * 5 4 3 35 35 H 0.97001 * 119.99842 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.47038 * 300.00466 * 16 14 2 37 37 H 1.08996 * 109.47386 * 180.02562 * 16 14 2 38 38 H 1.08999 * 109.47135 * 299.99873 * 17 16 14 39 39 H 1.08995 * 109.47219 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47083 * 300.00282 * 24 18 17 41 41 H 1.09005 * 109.47038 * 179.97438 * 24 18 17 42 42 H 1.08999 * 109.47417 * 180.02562 * 25 14 2 43 43 H 1.09004 * 109.46815 * 60.00348 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1803 3.4856 -1.3187 6 6 1.8224 4.1610 -2.6174 7 1 1.2593 3.6253 -3.3673 8 6 2.2128 5.4631 -2.8477 9 7 2.8980 6.1155 -1.9343 10 14 1.7684 6.3006 -4.4573 11 1 0.2913 6.3376 -4.6048 12 1 2.3013 7.6866 -4.4576 13 1 2.3601 5.5430 -5.5892 14 6 1.9954 -0.7659 1.1376 15 1 1.7286 -0.2644 2.0679 16 6 1.3950 -2.1732 1.1266 17 6 1.7695 -2.8772 -0.1792 18 6 3.2926 -2.9717 -0.2891 19 1 3.6832 -3.5400 0.5550 20 6 3.6670 -3.6762 -1.5946 21 9 5.0598 -3.7620 -1.6953 22 9 3.1182 -4.9629 -1.6042 23 9 3.1656 -2.9471 -2.6783 24 6 3.8930 -1.5644 -0.2780 25 6 3.5185 -0.8604 1.0278 26 1 -0.3634 0.3448 0.9681 27 1 -0.3633 0.6661 -0.7826 28 1 -0.3634 -1.0108 -0.1855 29 1 1.5611 1.9274 0.8308 30 1 3.0797 1.3444 0.1082 31 1 2.0658 1.5014 -2.1492 32 1 0.5472 2.0844 -1.4266 33 1 1.7463 4.0417 -0.4877 34 1 3.2646 3.4581 -1.2106 35 1 3.1730 7.0315 -2.0965 36 1 0.3099 -2.1059 1.2048 37 1 1.7853 -2.7414 1.9709 38 1 1.3788 -2.3088 -1.0234 39 1 1.3414 -3.8795 -0.1874 40 1 3.5023 -0.9961 -1.1221 41 1 4.9781 -1.6317 -0.3558 42 1 3.9091 -1.4291 1.8717 43 1 3.9462 0.1422 1.0357 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574721473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -180.316619 kcal Electronic energy + Delta-G solvation = -24983.750821 eV Core-core repulsion = 21033.607526 eV Total energy + Delta-G solvation = -3950.143295 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.166 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.12060 -47.63818 -47.54378 -39.66689 -36.09712 -33.60887 -31.78365 -31.22867 -30.12359 -26.93739 -25.98203 -24.60188 -22.84201 -22.38810 -21.38375 -19.92368 -19.18761 -18.27337 -18.14175 -17.61486 -16.28735 -15.78461 -15.53444 -14.99474 -14.55868 -14.49218 -14.40515 -14.06443 -14.02455 -13.74616 -13.73803 -13.53965 -13.47135 -13.23764 -12.50027 -12.41640 -12.22944 -12.11918 -11.92068 -11.72065 -11.36516 -11.29329 -11.10388 -10.88272 -10.77758 -10.55908 -10.47917 -10.36024 -10.08801 -9.54689 -9.29436 -9.03931 -8.31513 -8.02471 -5.97220 -3.99076 2.73965 3.35616 3.39666 3.42588 3.73684 3.94068 4.00685 4.13032 4.49284 4.58233 4.63276 4.89311 5.04477 5.06429 5.19175 5.23926 5.37520 5.38313 5.39192 5.51469 5.61511 5.70258 5.77525 5.84215 5.92013 5.98686 6.00883 6.08506 6.13514 6.19012 6.33635 6.39639 6.73365 6.81977 7.15041 7.38602 7.41906 7.71040 7.86208 8.03348 8.46951 9.07979 9.64869 11.14202 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.003656 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.775107 B = 7656.965543 C = 8323.932829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.052 3.948 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.079 3.921 15 H 0.041 0.959 16 C -0.108 4.108 17 C -0.112 4.112 18 C -0.124 4.124 19 H 0.105 0.895 20 C 0.451 3.549 21 F -0.187 7.187 22 F -0.190 7.190 23 F -0.177 7.177 24 C -0.112 4.112 25 C -0.109 4.109 26 H 0.020 0.980 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 -20.953 7.643 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.075 4.075 4 C -0.142 4.142 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.030 4.030 15 H 0.059 0.941 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.144 4.144 19 H 0.123 0.877 20 C 0.397 3.603 21 F -0.169 7.169 22 F -0.171 7.171 23 F -0.158 7.158 24 C -0.150 4.150 25 C -0.146 4.146 26 H 0.038 0.962 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.170 -21.029 7.222 22.235 hybrid contribution -0.378 0.819 -0.315 0.955 sum -0.547 -20.210 6.907 21.365 Atomic orbital electron populations 1.22461 0.88036 1.01865 1.00502 1.62109 1.07398 1.14844 1.41377 1.22365 0.99872 0.86248 0.99034 1.21656 0.99985 0.98120 0.94449 1.19062 0.96170 0.89401 0.96876 1.21216 1.34751 0.97592 1.02080 0.92767 1.25014 0.95239 0.97503 0.96674 1.69954 1.38361 1.11330 1.34024 0.86674 0.78742 0.78493 0.84194 1.20290 1.21334 1.20216 1.21650 0.94876 0.93948 0.92507 0.94137 1.21568 1.01011 0.95076 0.96895 1.21504 0.91688 1.01091 1.00617 1.22449 1.00227 0.99009 0.92676 0.87710 1.20742 0.74287 0.77099 0.88131 1.93165 1.30670 1.96227 1.96828 1.93149 1.85667 1.41302 1.97002 1.93207 1.87171 1.77120 1.58339 1.21510 1.00013 0.92533 1.00920 1.21568 0.94886 1.01367 0.96792 0.96172 0.90576 0.91841 0.95526 0.90903 0.92639 0.93474 0.96950 0.96690 0.93019 0.91092 0.91628 0.89009 0.91591 0.88670 0.91390 0.91700 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.68 60.06 0.52 0.77 16 2 N -0.53 -7.16 3.10 -234.89 -0.73 -7.89 16 3 C 0.05 0.85 4.79 -3.82 -0.02 0.84 16 4 C -0.10 -2.12 5.10 -26.73 -0.14 -2.26 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.08 0.86 2.26 -67.71 -0.15 0.71 16 15 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 16 C -0.11 -0.95 4.93 -26.73 -0.13 -1.09 16 17 C -0.11 -1.05 4.72 -26.73 -0.13 -1.18 16 18 C -0.12 -1.19 2.16 -90.62 -0.20 -1.38 16 19 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 20 C 0.45 5.07 2.69 37.16 0.10 5.17 16 21 F -0.19 -2.22 16.80 2.25 0.04 -2.19 16 22 F -0.19 -2.13 16.80 2.25 0.04 -2.09 16 23 F -0.18 -2.34 16.28 2.25 0.04 -2.30 16 24 C -0.11 -1.22 4.80 -26.73 -0.13 -1.35 16 25 C -0.11 -1.12 5.15 -26.73 -0.14 -1.26 16 26 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 27 H 0.08 1.07 6.07 -51.93 -0.32 0.75 16 28 H 0.06 0.68 6.30 -51.93 -0.33 0.36 16 29 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.07 1.20 5.89 -51.93 -0.31 0.89 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.95 6.36 -51.93 -0.33 0.62 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 0.61 6.48 -51.93 -0.34 0.27 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.05 6.94 -51.93 -0.36 0.69 16 39 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 40 H 0.09 1.28 7.27 -51.93 -0.38 0.90 16 41 H 0.07 0.70 7.80 -51.93 -0.41 0.30 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.88 6.24 -51.93 -0.32 0.56 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -29.80 338.36 -7.59 -37.38 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -6.83 Total: -4.32 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.96 Total: -14.14 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.01 Total: -34.27 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.80 -7.59 -37.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574721473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.932 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds