Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00213 * 2 1 4 4 C 1.53002 * 109.46971 * 293.95338 * 3 2 1 5 5 C 1.53003 * 109.47430 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47371 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99560 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99923 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99772 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47381 * 60.00124 * 10 8 6 12 12 H 1.48494 * 109.46838 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46987 * 300.00049 * 10 8 6 14 14 C 1.46903 * 111.00100 * 123.95116 * 2 1 3 15 15 H 1.08998 * 109.46970 * 294.44446 * 14 2 1 16 16 C 1.53003 * 109.47087 * 54.44073 * 14 2 1 17 17 C 1.53002 * 109.46980 * 60.00082 * 16 14 2 18 18 C 1.52997 * 109.47085 * 60.00220 * 17 16 14 19 19 H 1.08999 * 109.47417 * 59.99826 * 18 17 16 20 20 C 1.53002 * 109.47085 * 179.97438 * 18 17 16 21 21 F 1.39908 * 109.46796 * 179.97438 * 20 18 17 22 22 F 1.39893 * 109.47198 * 299.99579 * 20 18 17 23 23 F 1.39904 * 109.46921 * 60.00089 * 20 18 17 24 24 C 1.53003 * 109.47032 * 299.99749 * 18 17 16 25 25 C 1.52997 * 109.47405 * 174.44114 * 14 2 1 26 26 H 1.09002 * 109.47456 * 289.60323 * 1 2 3 27 27 H 1.09005 * 109.47037 * 49.59709 * 1 2 3 28 28 H 1.09000 * 109.47302 * 169.60053 * 1 2 3 29 29 H 1.08998 * 109.47358 * 53.95010 * 3 2 1 30 30 H 1.09000 * 109.47656 * 173.95471 * 3 2 1 31 31 H 1.09004 * 109.47231 * 299.99962 * 4 3 2 32 32 H 1.09001 * 109.47332 * 59.99501 * 4 3 2 33 33 H 1.09004 * 109.46689 * 300.00057 * 5 4 3 34 34 H 1.09001 * 109.46963 * 59.99513 * 5 4 3 35 35 H 0.97001 * 119.99842 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.47038 * 300.00466 * 16 14 2 37 37 H 1.08996 * 109.47386 * 180.02562 * 16 14 2 38 38 H 1.08999 * 109.47135 * 299.99873 * 17 16 14 39 39 H 1.08995 * 109.47219 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47083 * 300.00282 * 24 18 17 41 41 H 1.09005 * 109.47038 * 179.97438 * 24 18 17 42 42 H 1.08999 * 109.47417 * 180.02562 * 25 14 2 43 43 H 1.09004 * 109.46815 * 60.00348 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1803 3.4856 -1.3187 6 6 1.8224 4.1610 -2.6174 7 1 1.2593 3.6253 -3.3673 8 6 2.2128 5.4631 -2.8477 9 7 2.8980 6.1155 -1.9343 10 14 1.7684 6.3006 -4.4573 11 1 0.2913 6.3376 -4.6048 12 1 2.3013 7.6866 -4.4576 13 1 2.3601 5.5430 -5.5892 14 6 1.9954 -0.7659 1.1376 15 1 1.7286 -0.2644 2.0679 16 6 1.3950 -2.1732 1.1266 17 6 1.7695 -2.8772 -0.1792 18 6 3.2926 -2.9717 -0.2891 19 1 3.6832 -3.5400 0.5550 20 6 3.6670 -3.6762 -1.5946 21 9 5.0598 -3.7620 -1.6953 22 9 3.1182 -4.9629 -1.6042 23 9 3.1656 -2.9471 -2.6783 24 6 3.8930 -1.5644 -0.2780 25 6 3.5185 -0.8604 1.0278 26 1 -0.3634 0.3448 0.9681 27 1 -0.3633 0.6661 -0.7826 28 1 -0.3634 -1.0108 -0.1855 29 1 1.5611 1.9274 0.8308 30 1 3.0797 1.3444 0.1082 31 1 2.0658 1.5014 -2.1492 32 1 0.5472 2.0844 -1.4266 33 1 1.7463 4.0417 -0.4877 34 1 3.2646 3.4581 -1.2106 35 1 3.1730 7.0315 -2.0965 36 1 0.3099 -2.1059 1.2048 37 1 1.7853 -2.7414 1.9709 38 1 1.3788 -2.3088 -1.0234 39 1 1.3414 -3.8795 -0.1874 40 1 3.5023 -0.9961 -1.1221 41 1 4.9781 -1.6317 -0.3558 42 1 3.9091 -1.4291 1.8717 43 1 3.9462 0.1422 1.0357 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574721473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -195.660529 kcal Electronic energy + Delta-G solvation = -24984.416183 eV Core-core repulsion = 21033.607526 eV Total energy + Delta-G solvation = -3950.808657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.03218 -48.53216 -48.49657 -40.58740 -37.27691 -35.48379 -33.43178 -32.05659 -31.32610 -28.53235 -27.07290 -25.92110 -24.07069 -23.52165 -22.35913 -21.56951 -20.10269 -19.17224 -19.06618 -18.49032 -18.42476 -16.81681 -16.68509 -16.36685 -16.03877 -15.49597 -15.43836 -15.35668 -14.95813 -14.68735 -14.68135 -14.56184 -14.48060 -14.35496 -14.14865 -13.66552 -13.30036 -13.24935 -13.12787 -12.84984 -12.81365 -12.63537 -12.49788 -12.33042 -12.13309 -11.90713 -11.73218 -11.42777 -11.36133 -11.17446 -11.04002 -10.86191 -10.53619 -9.11187 -8.19597 -6.30322 1.39556 1.42628 1.50524 1.88437 2.41100 2.88353 3.07423 3.09281 3.13469 3.17439 3.75455 3.84164 4.08939 4.16645 4.23418 4.26090 4.35941 4.41505 4.47091 4.59725 4.65520 4.70677 4.75609 4.80449 4.89505 4.98101 5.05117 5.10882 5.13755 5.15483 5.26190 5.29776 5.32550 5.36137 5.50313 5.55650 5.77138 5.87620 6.17664 6.29665 6.34741 6.86337 7.38779 8.92056 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.003656 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.775107 B = 7656.965543 C = 8323.932829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.066 3.934 4 C -0.088 4.088 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.076 3.924 15 H 0.043 0.957 16 C -0.100 4.100 17 C -0.110 4.110 18 C -0.116 4.116 19 H 0.134 0.866 20 C 0.448 3.552 21 F -0.193 7.193 22 F -0.188 7.188 23 F -0.193 7.193 24 C -0.110 4.110 25 C -0.107 4.107 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.048 0.952 33 H -0.011 1.011 34 H -0.009 1.009 35 H 0.263 0.737 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -22.591 8.145 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.062 4.062 4 C -0.126 4.126 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.193 1.193 14 C -0.032 4.032 15 H 0.060 0.940 16 C -0.138 4.138 17 C -0.147 4.147 18 C -0.135 4.135 19 H 0.152 0.848 20 C 0.394 3.606 21 F -0.174 7.174 22 F -0.170 7.170 23 F -0.175 7.175 24 C -0.148 4.148 25 C -0.144 4.144 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.007 0.993 34 H 0.009 0.991 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.801 -22.689 7.726 23.981 hybrid contribution -0.160 1.298 -0.460 1.387 sum -0.961 -21.390 7.266 22.611 Atomic orbital electron populations 1.22477 0.87369 1.02801 1.00121 1.62057 1.08036 1.12702 1.43262 1.22035 0.99896 0.87982 0.96272 1.21388 0.99564 0.95117 0.96549 1.18956 0.94586 0.92327 0.95174 1.21659 1.34970 0.98346 1.03120 0.92517 1.25950 0.94940 0.98253 1.00525 1.70084 1.39294 1.11771 1.36185 0.85540 0.78928 0.77364 0.79465 1.19162 1.20681 1.19332 1.21795 0.95276 0.94899 0.91275 0.93950 1.21559 1.01407 0.93440 0.97383 1.21486 0.91405 1.01674 1.00148 1.22473 1.00428 0.98111 0.92483 0.84826 1.21058 0.73979 0.77150 0.88388 1.93153 1.31132 1.96254 1.96868 1.93148 1.85607 1.41230 1.96995 1.93177 1.87373 1.77553 1.59365 1.21432 1.00153 0.93154 1.00072 1.21575 0.94553 1.00825 0.97470 0.95566 0.92533 0.89579 0.96209 0.91056 0.93416 0.93318 0.99277 0.99093 0.92778 0.90416 0.88980 0.91287 0.90039 0.91753 0.91141 0.88848 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.68 127.69 1.11 1.59 16 2 N -0.54 -14.06 3.10 -897.06 -2.78 -16.85 16 3 C 0.07 2.22 4.79 86.30 0.41 2.63 16 4 C -0.09 -3.71 5.10 30.60 0.16 -3.56 16 5 C 0.03 1.46 4.97 29.85 0.15 1.61 16 6 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 10 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.08 1.49 2.26 44.91 0.10 1.60 16 15 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 16 C -0.10 -1.43 4.93 30.60 0.15 -1.28 16 17 C -0.11 -1.78 4.72 30.59 0.14 -1.64 16 18 C -0.12 -1.95 2.16 -10.79 -0.02 -1.97 16 19 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 20 C 0.45 9.49 2.69 71.98 0.19 9.68 16 21 F -0.19 -4.36 16.80 44.97 0.76 -3.61 16 22 F -0.19 -3.88 16.80 44.97 0.76 -3.13 16 23 F -0.19 -5.08 16.28 44.97 0.73 -4.35 16 24 C -0.11 -2.28 4.80 30.60 0.15 -2.13 16 25 C -0.11 -2.02 5.15 30.59 0.16 -1.86 16 26 H 0.03 0.59 8.12 -2.39 -0.02 0.57 16 27 H 0.06 1.57 6.07 -2.38 -0.01 1.56 16 28 H 0.09 1.68 6.30 -2.39 -0.02 1.66 16 29 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 30 H 0.07 2.42 5.89 -2.39 -0.01 2.40 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.01 6.36 -2.39 -0.02 2.00 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.08 1.04 6.48 -2.38 -0.02 1.03 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.47 6.94 -2.39 -0.02 1.45 16 39 H 0.08 1.11 7.80 -2.39 -0.02 1.09 16 40 H 0.06 1.74 7.27 -2.39 -0.02 1.72 16 41 H 0.07 1.39 7.80 -2.38 -0.02 1.38 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.34 6.24 -2.39 -0.01 1.32 16 Total: -1.00 -65.45 338.36 6.15 -59.30 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 0.99 Total: 5.05 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 3.39 Total: -26.23 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -2.50 Total: -74.07 kcal Atomic # 9 Polarization: -13.33 SS G_CDS: 2.24 Total: -11.08 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.45 6.15 -59.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574721473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.363 kcal (2) G-P(sol) polarization free energy of solvation -65.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds