Wall clock time and date at job start Tue Mar 31 2020 06:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47224 * 2 1 4 4 C 1.42906 * 114.00045 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47362 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.46842 * 64.99752 * 5 4 3 7 7 C 1.42900 * 113.99784 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47288 * 180.02562 * 7 6 5 9 9 C 1.38310 * 119.96270 * 359.97438 * 8 7 6 10 10 C 1.38261 * 120.15468 * 180.02562 * 9 8 7 11 11 C 1.38127 * 120.07179 * 0.02562 * 10 9 8 12 12 C 1.38895 * 119.92768 * 359.97438 * 11 10 9 13 13 N 1.39666 * 120.07698 * 179.72652 * 12 11 10 14 14 C 1.46504 * 120.00221 * 0.02562 * 13 12 11 15 15 C 1.50694 * 109.47299 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00136 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99726 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46837 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47064 * 119.99462 * 19 17 15 22 22 H 1.48498 * 109.47046 * 239.99899 * 19 17 15 23 23 C 1.38081 * 119.96751 * 180.02562 * 8 7 6 24 24 C 1.50700 * 120.03339 * 359.97438 * 23 8 7 25 25 H 1.09005 * 109.47525 * 59.99354 * 1 2 3 26 26 H 1.08993 * 109.47551 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46819 * 299.99981 * 1 2 3 28 28 H 1.09004 * 109.46525 * 240.00715 * 2 1 3 29 29 H 1.08998 * 109.47175 * 120.00657 * 2 1 3 30 30 H 1.09000 * 109.46753 * 59.99997 * 4 3 2 31 31 H 1.08996 * 109.46858 * 300.00579 * 4 3 2 32 32 H 1.09002 * 109.47198 * 305.00108 * 5 4 3 33 33 H 1.08994 * 109.47099 * 185.00188 * 5 4 3 34 34 H 1.08995 * 109.47464 * 60.00241 * 7 6 5 35 35 H 1.09005 * 109.47333 * 300.00454 * 7 6 5 36 36 H 1.07997 * 119.92180 * 0.02562 * 9 8 7 37 37 H 1.07992 * 119.96862 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.04118 * 179.97438 * 11 10 9 39 39 H 0.96999 * 120.00022 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46650 * 300.00231 * 14 13 12 41 41 H 1.08998 * 109.46739 * 60.00165 * 14 13 12 42 42 H 0.97004 * 120.00141 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.47651 * 269.97645 * 24 23 8 44 44 H 1.08999 * 109.47618 * 29.98213 * 24 23 8 45 45 H 1.09007 * 109.46867 * 149.97957 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 8 3.3987 3.5446 1.2217 7 6 3.7196 4.9333 1.3244 8 6 3.2264 5.4665 2.6448 9 6 2.5759 4.6258 3.5297 10 6 2.1213 5.1109 4.7420 11 6 2.3152 6.4379 5.0730 12 6 2.9681 7.2849 4.1868 13 7 3.1607 8.6285 4.5159 14 6 2.6745 9.1458 5.7974 15 6 3.0058 10.6119 5.9056 16 1 3.5268 11.1087 5.1005 17 6 2.6446 11.3190 7.0329 18 7 2.0106 10.7140 8.0134 19 14 3.0559 13.1362 7.1673 20 1 3.7669 13.5749 5.9396 21 1 1.8023 13.9174 7.3198 22 1 3.9260 13.3606 8.3496 23 6 3.4235 6.7940 2.9695 24 6 4.1319 7.7094 2.0045 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9766 -0.8908 31 1 3.8340 0.9763 0.8891 32 1 3.3493 3.4419 -0.8412 33 1 4.9082 3.0253 -0.0899 34 1 3.2409 5.4780 0.5107 35 1 4.8001 5.0622 1.2616 36 1 2.4226 3.5880 3.2731 37 1 1.6141 4.4518 5.4308 38 1 1.9596 6.8164 6.0199 39 1 3.6165 9.2192 3.8960 40 1 1.5942 9.0124 5.8567 41 1 3.1529 8.6037 6.6131 42 1 1.7562 11.2115 8.8064 43 1 5.2031 7.6908 2.2055 44 1 3.9479 7.3740 0.9838 45 1 3.7571 8.7258 2.1260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575175090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:32 Heat of formation + Delta-G solvation = -81.518031 kcal Electronic energy + Delta-G solvation = -22706.461103 eV Core-core repulsion = 19302.458777 eV Total energy + Delta-G solvation = -3404.002326 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.38623 -38.51940 -37.34004 -34.96380 -32.74668 -32.67182 -31.92054 -30.05532 -28.84026 -26.97706 -26.08615 -25.30080 -23.03568 -22.80216 -22.61271 -20.60174 -19.76512 -17.43863 -17.19064 -16.81924 -16.03457 -15.88772 -15.63758 -15.09952 -14.92981 -14.67123 -14.24818 -13.88006 -13.65590 -13.50160 -12.97969 -12.79047 -12.76867 -12.61228 -12.32363 -12.21021 -12.10746 -11.81924 -11.66044 -11.42235 -11.34098 -11.15960 -10.94850 -10.93201 -10.59948 -10.31735 -10.06247 -9.85950 -9.77706 -9.35459 -9.26751 -8.51129 -8.03213 -6.43494 -6.19911 -4.24889 1.93894 2.33054 3.22201 3.29572 3.33032 3.40914 3.55620 4.27120 4.44245 4.63431 4.72802 4.78044 4.92470 4.97252 5.07425 5.08200 5.17224 5.17629 5.25692 5.35376 5.40907 5.46247 5.48977 5.53223 5.61051 5.65756 5.77066 5.88004 5.95411 6.06634 6.20179 6.28980 6.49961 6.61868 6.92547 7.00667 7.04601 7.16080 7.22829 7.39474 7.46172 7.53103 7.70775 7.97235 8.34252 8.71153 8.93740 9.41421 10.90765 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032894 B = 0.002448 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.020112 B =11433.037295 C =12011.665209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.065 3.935 5 C 0.063 3.937 6 O -0.372 6.372 7 C 0.110 3.890 8 C -0.048 4.048 9 C -0.173 4.173 10 C -0.078 4.078 11 C -0.199 4.199 12 C 0.234 3.766 13 N -0.730 5.730 14 C 0.251 3.749 15 C -0.538 4.538 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.181 4.181 24 C -0.102 4.102 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.390 0.610 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.265 0.735 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -18.609 -16.620 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.014 4.014 6 O -0.291 6.291 7 C 0.034 3.966 8 C -0.048 4.048 9 C -0.194 4.194 10 C -0.096 4.096 11 C -0.222 4.222 12 C 0.125 3.875 13 N -0.354 5.354 14 C 0.130 3.870 15 C -0.576 4.576 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.526 5.526 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.187 4.187 24 C -0.159 4.159 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.225 0.775 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.335 -18.390 -16.067 24.532 hybrid contribution 0.634 1.108 -0.150 1.286 sum 2.970 -17.282 -16.217 23.885 Atomic orbital electron populations 1.21737 0.93700 1.02082 1.03396 1.22449 0.95788 0.83966 0.99780 1.87999 1.20479 1.26050 1.95343 1.22501 0.82244 0.95740 1.00655 1.22470 0.98164 0.92560 0.88207 1.87960 1.80974 1.23037 1.37137 1.21178 0.98359 0.81376 0.95708 1.18994 0.98892 0.92522 0.94433 1.20483 1.04304 0.99782 0.94826 1.20811 0.98039 0.94677 0.96112 1.20757 1.06506 0.93850 1.01079 1.17737 0.92205 0.85681 0.91837 1.45528 1.62188 1.05618 1.22068 1.19095 0.94463 0.93815 0.79650 1.21237 1.38750 0.94030 1.03573 0.92013 1.24937 0.94762 0.99020 0.95340 1.69957 1.38950 1.36553 1.07170 0.86362 0.78183 0.84249 0.78150 1.19667 1.20777 1.20791 1.18890 1.09238 0.94132 0.96428 1.20546 0.99448 0.98618 0.97322 0.91937 0.91246 0.91537 0.93748 0.93398 0.92107 0.92398 0.92565 0.91923 0.92351 0.92496 0.86283 0.86973 0.85892 0.77526 0.96220 0.96209 0.92535 0.92139 0.92384 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.29 10.31 -40.09 -0.41 -4.70 16 4 C 0.07 0.58 6.32 37.16 0.23 0.82 16 5 C 0.06 0.61 6.32 37.16 0.23 0.84 16 6 O -0.37 -4.98 8.78 -40.09 -0.35 -5.33 16 7 C 0.11 1.44 5.04 36.00 0.18 1.63 16 8 C -0.05 -0.79 5.88 -104.65 -0.62 -1.40 16 9 C -0.17 -2.96 9.37 -39.55 -0.37 -3.33 16 10 C -0.08 -1.37 10.04 -39.61 -0.40 -1.76 16 11 C -0.20 -3.99 9.31 -39.38 -0.37 -4.36 16 12 C 0.23 4.75 6.63 -83.79 -0.56 4.20 16 13 N -0.73 -15.96 5.62 -59.81 -0.34 -16.30 16 14 C 0.25 6.50 4.67 -5.19 -0.02 6.47 16 15 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 16 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.18 -3.17 5.90 -104.42 -0.62 -3.79 16 24 C -0.10 -1.47 9.16 36.01 0.33 -1.14 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.71 7.49 -51.93 -0.39 0.32 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.12 1.94 7.00 -52.49 -0.37 1.58 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.12 2.60 6.73 -52.49 -0.35 2.25 16 39 H 0.39 7.94 6.32 -40.82 -0.26 7.68 16 40 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 41 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.70 6.64 -51.93 -0.34 0.36 16 45 H 0.06 0.90 6.54 -51.93 -0.34 0.56 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -30.84 369.32 -9.06 -39.90 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.48 Total: 5.18 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.75 Total: -15.28 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.40 Total: -41.34 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.77 Total: -10.03 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.84 -9.06 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575175090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.621 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds