Wall clock time and date at job start Tue Mar 31 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47224 * 2 1 4 4 C 1.42906 * 114.00045 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47362 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.46842 * 64.99752 * 5 4 3 7 7 C 1.42900 * 113.99784 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47288 * 180.02562 * 7 6 5 9 9 C 1.38310 * 119.96270 * 359.97438 * 8 7 6 10 10 C 1.38261 * 120.15468 * 180.02562 * 9 8 7 11 11 C 1.38127 * 120.07179 * 0.02562 * 10 9 8 12 12 C 1.38895 * 119.92768 * 359.97438 * 11 10 9 13 13 N 1.39666 * 120.07698 * 179.72652 * 12 11 10 14 14 C 1.46504 * 120.00221 * 0.02562 * 13 12 11 15 15 C 1.50694 * 109.47299 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00136 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99726 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46837 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47064 * 119.99462 * 19 17 15 22 22 H 1.48498 * 109.47046 * 239.99899 * 19 17 15 23 23 C 1.38081 * 119.96751 * 180.02562 * 8 7 6 24 24 C 1.50700 * 120.03339 * 359.97438 * 23 8 7 25 25 H 1.09005 * 109.47525 * 59.99354 * 1 2 3 26 26 H 1.08993 * 109.47551 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46819 * 299.99981 * 1 2 3 28 28 H 1.09004 * 109.46525 * 240.00715 * 2 1 3 29 29 H 1.08998 * 109.47175 * 120.00657 * 2 1 3 30 30 H 1.09000 * 109.46753 * 59.99997 * 4 3 2 31 31 H 1.08996 * 109.46858 * 300.00579 * 4 3 2 32 32 H 1.09002 * 109.47198 * 305.00108 * 5 4 3 33 33 H 1.08994 * 109.47099 * 185.00188 * 5 4 3 34 34 H 1.08995 * 109.47464 * 60.00241 * 7 6 5 35 35 H 1.09005 * 109.47333 * 300.00454 * 7 6 5 36 36 H 1.07997 * 119.92180 * 0.02562 * 9 8 7 37 37 H 1.07992 * 119.96862 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.04118 * 179.97438 * 11 10 9 39 39 H 0.96999 * 120.00022 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46650 * 300.00231 * 14 13 12 41 41 H 1.08998 * 109.46739 * 60.00165 * 14 13 12 42 42 H 0.97004 * 120.00141 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.47651 * 269.97645 * 24 23 8 44 44 H 1.08999 * 109.47618 * 29.98213 * 24 23 8 45 45 H 1.09007 * 109.46867 * 149.97957 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 8 3.3987 3.5446 1.2217 7 6 3.7196 4.9333 1.3244 8 6 3.2264 5.4665 2.6448 9 6 2.5759 4.6258 3.5297 10 6 2.1213 5.1109 4.7420 11 6 2.3152 6.4379 5.0730 12 6 2.9681 7.2849 4.1868 13 7 3.1607 8.6285 4.5159 14 6 2.6745 9.1458 5.7974 15 6 3.0058 10.6119 5.9056 16 1 3.5268 11.1087 5.1005 17 6 2.6446 11.3190 7.0329 18 7 2.0106 10.7140 8.0134 19 14 3.0559 13.1362 7.1673 20 1 3.7669 13.5749 5.9396 21 1 1.8023 13.9174 7.3198 22 1 3.9260 13.3606 8.3496 23 6 3.4235 6.7940 2.9695 24 6 4.1319 7.7094 2.0045 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9766 -0.8908 31 1 3.8340 0.9763 0.8891 32 1 3.3493 3.4419 -0.8412 33 1 4.9082 3.0253 -0.0899 34 1 3.2409 5.4780 0.5107 35 1 4.8001 5.0622 1.2616 36 1 2.4226 3.5880 3.2731 37 1 1.6141 4.4518 5.4308 38 1 1.9596 6.8164 6.0199 39 1 3.6165 9.2192 3.8960 40 1 1.5942 9.0124 5.8567 41 1 3.1529 8.6037 6.6131 42 1 1.7562 11.2115 8.8064 43 1 5.2031 7.6908 2.2055 44 1 3.9479 7.3740 0.9838 45 1 3.7571 8.7258 2.1260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575175090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:31 Heat of formation + Delta-G solvation = -99.873994 kcal Electronic energy + Delta-G solvation = -22707.257078 eV Core-core repulsion = 19302.458777 eV Total energy + Delta-G solvation = -3404.798301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74057 -39.34985 -38.26828 -36.64541 -34.66822 -33.97332 -32.69978 -31.34624 -29.89119 -28.55618 -27.58465 -26.61601 -24.57499 -23.64166 -23.47414 -22.02038 -21.24095 -19.13094 -18.01082 -17.80188 -17.50924 -17.07734 -16.61660 -16.49961 -16.13603 -15.93208 -15.79248 -15.23090 -14.77281 -14.56092 -14.42606 -14.18836 -14.05237 -13.96984 -13.54953 -13.24412 -13.06885 -12.98641 -12.92430 -12.82666 -12.63544 -12.34856 -12.24599 -12.15190 -11.99080 -11.76225 -11.52751 -11.39877 -11.07042 -10.66012 -10.51000 -10.47248 -9.39582 -8.31869 -8.07860 -6.46033 0.52540 0.84997 1.39847 1.40441 1.53856 2.32796 2.63508 2.80742 2.98765 2.99851 3.04058 3.89579 4.08902 4.13637 4.19144 4.27880 4.28503 4.36926 4.38307 4.45599 4.51155 4.53878 4.55439 4.61562 4.72891 4.78341 4.82427 4.86346 4.93524 4.94425 5.04276 5.05874 5.08511 5.28494 5.28912 5.35935 5.52835 5.57988 5.73777 5.77578 5.86552 6.16216 6.28889 6.41416 6.48632 6.75219 7.16755 7.28741 8.80320 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032894 B = 0.002448 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.020112 B =11433.037295 C =12011.665209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.412 6.412 4 C 0.061 3.939 5 C 0.057 3.943 6 O -0.397 6.397 7 C 0.113 3.887 8 C -0.049 4.049 9 C -0.170 4.170 10 C -0.080 4.080 11 C -0.225 4.225 12 C 0.205 3.795 13 N -0.733 5.733 14 C 0.273 3.727 15 C -0.556 4.556 16 H 0.071 0.929 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.980 3.020 20 H -0.259 1.259 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.176 4.176 24 C -0.102 4.102 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.397 0.603 40 H -0.013 1.013 41 H -0.012 1.012 42 H 0.269 0.731 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -19.052 -19.225 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.332 6.332 4 C -0.015 4.015 5 C -0.020 4.020 6 O -0.317 6.317 7 C 0.037 3.963 8 C -0.050 4.050 9 C -0.190 4.190 10 C -0.098 4.098 11 C -0.249 4.249 12 C 0.099 3.901 13 N -0.361 5.361 14 C 0.150 3.850 15 C -0.594 4.594 16 H 0.090 0.910 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.804 3.196 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.181 4.181 24 C -0.158 4.158 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.114 0.886 39 H 0.233 0.767 40 H 0.005 0.995 41 H 0.006 0.994 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.768 -18.880 -18.712 26.847 hybrid contribution 0.172 1.039 0.585 1.204 sum 3.940 -17.842 -18.127 25.738 Atomic orbital electron populations 1.21770 0.93608 1.03186 1.02359 1.22617 0.95980 0.83090 1.00841 1.87956 1.21886 1.27757 1.95585 1.22672 0.81368 0.95593 1.01902 1.22742 0.99767 0.92659 0.86783 1.87916 1.81654 1.22933 1.39181 1.21181 0.99614 0.81758 0.93700 1.19446 0.97583 0.91990 0.95941 1.20717 1.03490 1.00430 0.94393 1.21011 0.97978 0.93821 0.97030 1.20752 1.08158 0.95316 1.00629 1.18031 0.93679 0.84970 0.93415 1.45148 1.63417 1.06615 1.20922 1.18530 0.92195 0.93409 0.80842 1.21606 1.38953 0.94683 1.04137 0.91049 1.25969 0.94323 1.04243 0.94792 1.70095 1.39913 1.38711 1.07866 0.85176 0.78105 0.77766 0.78581 1.18316 1.20230 1.20215 1.19231 1.08127 0.95171 0.95592 1.20624 0.99766 0.97510 0.97933 0.92314 0.89123 0.93169 0.91842 0.93076 0.89286 0.92621 0.92181 0.89343 0.90837 0.90187 0.85211 0.85046 0.88555 0.76684 0.99471 0.99375 0.92213 0.90705 0.89475 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -8.64 10.31 -144.34 -1.49 -10.12 16 4 C 0.06 0.93 6.32 71.98 0.45 1.39 16 5 C 0.06 0.92 6.32 71.98 0.45 1.37 16 6 O -0.40 -9.56 8.78 -144.34 -1.27 -10.83 16 7 C 0.11 2.61 5.04 71.23 0.36 2.97 16 8 C -0.05 -1.52 5.88 -19.89 -0.12 -1.64 16 9 C -0.17 -5.64 9.37 22.29 0.21 -5.43 16 10 C -0.08 -2.86 10.04 22.25 0.22 -2.64 16 11 C -0.23 -9.58 9.31 22.40 0.21 -9.37 16 12 C 0.21 8.57 6.63 38.22 0.25 8.82 16 13 N -0.73 -33.33 5.62 -343.13 -1.93 -35.26 16 14 C 0.27 15.00 4.67 85.63 0.40 15.40 16 15 C -0.56 -31.21 9.28 25.60 0.24 -30.98 16 16 H 0.07 3.77 7.60 -2.91 -0.02 3.75 16 17 C 0.01 0.36 5.46 84.66 0.46 0.82 16 18 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 19 Si 0.98 43.28 29.54 68.60 2.03 45.31 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.18 -5.98 5.90 -19.73 -0.12 -6.10 16 24 C -0.10 -2.67 9.16 71.24 0.65 -2.01 16 25 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.50 7.49 -2.39 -0.02 1.48 16 35 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.13 4.05 7.00 -2.91 -0.02 4.03 16 37 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.10 4.51 6.73 -2.91 -0.02 4.49 16 39 H 0.40 16.43 6.32 -92.71 -0.59 15.85 16 40 H -0.01 -0.75 7.95 -2.38 -0.02 -0.77 16 41 H -0.01 -0.69 7.95 -2.39 -0.02 -0.71 16 42 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.09 1.77 6.64 -2.39 -0.02 1.75 16 45 H 0.05 1.52 6.54 -2.38 -0.02 1.51 16 Total: -1.00 -68.95 369.32 2.91 -66.04 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.38 Total: 27.66 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.90 Total: -27.55 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -1.65 Total: -90.50 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -2.76 Total: -20.95 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -68.95 2.91 -66.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575175090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.833 kcal (2) G-P(sol) polarization free energy of solvation -68.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds