Wall clock time and date at job start Tue Mar 31 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47430 * 2 1 4 4 C 1.35993 * 117.00259 * 179.97438 * 3 2 1 5 5 C 1.38571 * 120.07212 * 0.02562 * 4 3 2 6 6 C 1.38242 * 120.00169 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.92614 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47592 * 89.99838 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46800 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00575 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99722 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99924 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00036 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47138 * 90.00010 * 16 14 12 18 18 H 1.48502 * 109.46886 * 209.99874 * 16 14 12 19 19 H 1.48495 * 109.47039 * 329.99931 * 16 14 12 20 20 C 1.38254 * 120.14238 * 0.27099 * 6 5 4 21 21 C 1.38242 * 120.15013 * 359.45230 * 20 6 5 22 22 C 1.38573 * 119.99575 * 0.55026 * 21 20 6 23 23 O 1.35990 * 120.06777 * 179.70449 * 22 21 20 24 24 C 1.42896 * 117.00356 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.46773 * 59.99808 * 1 2 3 26 26 H 1.09000 * 109.47636 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47059 * 300.00726 * 1 2 3 28 28 H 1.08999 * 109.47175 * 239.99926 * 2 1 3 29 29 H 1.09005 * 109.46773 * 120.00191 * 2 1 3 30 30 H 1.08003 * 119.99700 * 359.97438 * 5 4 3 31 31 H 1.09002 * 109.47210 * 329.99520 * 7 6 5 32 32 H 1.09001 * 109.46665 * 209.99778 * 7 6 5 33 33 H 1.09002 * 109.47103 * 59.99616 * 8 7 6 34 34 H 1.08998 * 109.46862 * 300.00428 * 8 7 6 35 35 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 36 36 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 37 37 H 1.00902 * 111.00582 * 303.95797 * 10 9 8 38 38 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 39 39 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 40 40 H 0.96998 * 120.00185 * 179.97438 * 15 14 12 41 41 H 1.08000 * 119.92022 * 179.70813 * 20 6 5 42 42 H 1.07993 * 120.00225 * 180.25145 * 21 20 6 43 43 H 1.08996 * 109.47377 * 300.00286 * 24 23 22 44 44 H 1.08997 * 109.47089 * 60.00107 * 24 23 22 45 45 H 1.08999 * 109.47131 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.2000 0.4275 0.0005 6 6 5.5703 0.6103 0.0005 7 6 6.4882 -0.5849 -0.0001 8 6 6.7988 -0.9888 -1.4426 9 6 7.7313 -2.2018 -1.4432 10 7 8.0290 -2.5899 -2.8284 11 6 8.9244 -3.7538 -2.8681 12 6 9.2070 -4.1214 -4.3020 13 1 8.7660 -3.5475 -5.1036 14 6 10.0287 -5.1903 -4.5905 15 7 10.5662 -5.8888 -3.6143 16 14 10.3797 -5.6456 -6.3678 17 1 11.5828 -4.9131 -6.8381 18 1 10.6205 -7.1076 -6.4660 19 1 9.2148 -5.2779 -7.2122 20 6 6.1004 1.8872 0.0062 21 6 5.2626 2.9868 0.0005 22 6 3.8881 2.8105 0.0006 23 8 3.0626 3.8912 0.0010 24 6 3.6805 5.1797 0.0008 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.7884 -0.5710 0.0005 31 1 6.0038 -1.4153 0.5135 32 1 7.4154 -0.3311 0.5138 33 1 7.2833 -0.1583 -1.9562 34 1 5.8717 -1.2424 -1.9565 35 1 7.2472 -3.0324 -0.9296 36 1 8.6584 -1.9476 -0.9295 37 1 7.1804 -2.7683 -3.3443 38 1 9.8599 -3.5099 -2.3647 39 1 8.4490 -4.5952 -2.3638 40 1 11.1439 -6.6411 -3.8173 41 1 7.1714 2.0258 0.0110 42 1 5.6792 3.9831 0.0009 43 1 4.3013 5.2850 0.8904 44 1 4.3005 5.2851 -0.8894 45 1 2.9110 5.9516 0.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576101469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:02 Heat of formation + Delta-G solvation = -69.590876 kcal Electronic energy + Delta-G solvation = -22515.762338 eV Core-core repulsion = 19112.277212 eV Total energy + Delta-G solvation = -3403.485126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74096 -38.70241 -37.71688 -35.82909 -33.51752 -32.29986 -31.85962 -30.15721 -29.45889 -27.72830 -26.45042 -24.47434 -23.98330 -21.99824 -21.64362 -21.12969 -20.72937 -18.60394 -17.30653 -16.79865 -16.45670 -16.37147 -15.69024 -15.21139 -14.86257 -14.66783 -14.53328 -14.43814 -13.84552 -13.68195 -13.31149 -13.21101 -12.84110 -12.69217 -12.39424 -12.29435 -12.13835 -11.82430 -11.65366 -11.43819 -11.26450 -11.17905 -11.09733 -10.90343 -10.80414 -10.66303 -10.49593 -10.34122 -9.85274 -9.17036 -8.82005 -8.46929 -7.86802 -7.27093 -6.02448 -4.04369 1.14313 1.30764 2.99805 3.08505 3.32867 3.38336 3.42406 3.56277 4.43542 4.55044 4.63592 4.67853 4.75911 4.82309 4.90803 4.91412 4.98685 5.10392 5.17776 5.22017 5.27259 5.31902 5.33447 5.37628 5.50578 5.52731 5.62869 5.76397 5.79881 5.88542 6.03486 6.06335 6.14698 6.17719 6.43883 6.54147 6.60241 6.63852 6.89100 7.27178 7.42772 7.43614 7.79923 8.14307 8.41781 8.63783 9.05172 9.60533 11.08741 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019658 B = 0.002384 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.008206 B =11743.518598 C =12409.374184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.308 6.308 4 C 0.103 3.897 5 C -0.170 4.170 6 C -0.067 4.067 7 C -0.078 4.078 8 C -0.109 4.109 9 C 0.059 3.941 10 N -0.692 5.692 11 C 0.193 3.807 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.114 4.114 21 C -0.169 4.169 22 C 0.087 3.913 23 O -0.310 6.310 24 C 0.027 3.973 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.134 0.866 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.016 0.984 36 H 0.063 0.937 37 H 0.328 0.672 38 H 0.027 0.973 39 H -0.014 1.014 40 H 0.261 0.739 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 18.258 11.277 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.222 6.222 4 C 0.058 3.942 5 C -0.189 4.189 6 C -0.068 4.068 7 C -0.116 4.116 8 C -0.147 4.147 9 C -0.071 4.071 10 N -0.323 5.323 11 C 0.067 3.933 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.132 4.132 21 C -0.188 4.188 22 C 0.042 3.958 23 O -0.223 6.223 24 C -0.068 4.068 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.144 0.856 38 H 0.045 0.955 39 H 0.003 0.997 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.926 18.695 11.242 27.611 hybrid contribution 0.060 -1.135 -0.633 1.301 sum -16.865 17.560 10.609 26.558 Atomic orbital electron populations 1.21756 0.92763 1.02785 1.03450 1.22796 0.95898 0.82135 1.01484 1.86144 1.18156 1.28852 1.89041 1.18174 0.83041 0.91083 1.01930 1.20980 0.93446 0.97454 1.07024 1.19687 0.93109 0.95149 0.98840 1.20592 0.98154 0.94609 0.98264 1.21558 0.99508 0.98976 0.94625 1.21896 0.97932 0.95049 0.92251 1.60650 1.19241 1.42017 1.10348 1.19551 0.91489 0.85070 0.97222 1.21207 1.28918 1.12909 0.92226 0.91967 1.25004 0.95904 0.96200 0.97560 1.69965 1.32559 1.19886 1.31412 0.86472 0.78713 0.77362 0.84703 1.20590 1.21300 1.19843 1.20796 0.99843 0.91214 1.01378 1.21041 0.91089 1.00221 1.06419 1.18216 0.89015 0.85234 1.03335 1.86150 1.33919 1.12960 1.89317 1.23034 0.99723 0.82853 1.01193 0.91526 0.90368 0.91631 0.91912 0.92102 0.84831 0.91185 0.90697 0.91138 0.92409 0.96555 0.91849 0.85631 0.95464 0.99670 0.92924 0.85390 0.84902 0.92839 0.92740 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.31 -3.83 9.92 -34.22 -0.34 -4.17 16 4 C 0.10 1.31 6.70 -39.12 -0.26 1.05 16 5 C -0.17 -2.00 8.69 -39.46 -0.34 -2.34 16 6 C -0.07 -0.79 5.13 -104.62 -0.54 -1.33 16 7 C -0.08 -0.92 5.34 -27.89 -0.15 -1.07 16 8 C -0.11 -1.54 5.46 -26.74 -0.15 -1.69 16 9 C 0.06 1.04 5.69 -3.83 -0.02 1.02 16 10 N -0.69 -15.22 6.49 -115.06 -0.75 -15.97 16 11 C 0.19 5.19 5.44 -4.98 -0.03 5.16 16 12 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 13 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 16 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 C -0.11 -1.26 9.69 -39.57 -0.38 -1.64 16 21 C -0.17 -1.80 9.04 -39.46 -0.36 -2.15 16 22 C 0.09 1.07 6.70 -39.12 -0.26 0.81 16 23 O -0.31 -3.67 10.28 -34.21 -0.35 -4.02 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.13 1.36 6.30 -52.48 -0.33 1.03 16 31 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.33 6.87 8.72 -39.29 -0.34 6.52 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 43 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 44 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -32.96 372.78 -9.06 -42.03 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.63 Total: 0.74 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.33 Total: -14.68 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.01 Total: -42.40 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.69 Total: -8.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.96 -9.06 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576101469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.566 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds