Wall clock time and date at job start Tue Mar 31 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47430 * 2 1 4 4 C 1.35993 * 117.00259 * 179.97438 * 3 2 1 5 5 C 1.38571 * 120.07212 * 0.02562 * 4 3 2 6 6 C 1.38242 * 120.00169 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.92614 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47592 * 89.99838 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46800 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00575 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99722 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99924 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00036 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47138 * 90.00010 * 16 14 12 18 18 H 1.48502 * 109.46886 * 209.99874 * 16 14 12 19 19 H 1.48495 * 109.47039 * 329.99931 * 16 14 12 20 20 C 1.38254 * 120.14238 * 0.27099 * 6 5 4 21 21 C 1.38242 * 120.15013 * 359.45230 * 20 6 5 22 22 C 1.38573 * 119.99575 * 0.55026 * 21 20 6 23 23 O 1.35990 * 120.06777 * 179.70449 * 22 21 20 24 24 C 1.42896 * 117.00356 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.46773 * 59.99808 * 1 2 3 26 26 H 1.09000 * 109.47636 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47059 * 300.00726 * 1 2 3 28 28 H 1.08999 * 109.47175 * 239.99926 * 2 1 3 29 29 H 1.09005 * 109.46773 * 120.00191 * 2 1 3 30 30 H 1.08003 * 119.99700 * 359.97438 * 5 4 3 31 31 H 1.09002 * 109.47210 * 329.99520 * 7 6 5 32 32 H 1.09001 * 109.46665 * 209.99778 * 7 6 5 33 33 H 1.09002 * 109.47103 * 59.99616 * 8 7 6 34 34 H 1.08998 * 109.46862 * 300.00428 * 8 7 6 35 35 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 36 36 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 37 37 H 1.00902 * 111.00582 * 303.95797 * 10 9 8 38 38 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 39 39 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 40 40 H 0.96998 * 120.00185 * 179.97438 * 15 14 12 41 41 H 1.08000 * 119.92022 * 179.70813 * 20 6 5 42 42 H 1.07993 * 120.00225 * 180.25145 * 21 20 6 43 43 H 1.08996 * 109.47377 * 300.00286 * 24 23 22 44 44 H 1.08997 * 109.47089 * 60.00107 * 24 23 22 45 45 H 1.08999 * 109.47131 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.2000 0.4275 0.0005 6 6 5.5703 0.6103 0.0005 7 6 6.4882 -0.5849 -0.0001 8 6 6.7988 -0.9888 -1.4426 9 6 7.7313 -2.2018 -1.4432 10 7 8.0290 -2.5899 -2.8284 11 6 8.9244 -3.7538 -2.8681 12 6 9.2070 -4.1214 -4.3020 13 1 8.7660 -3.5475 -5.1036 14 6 10.0287 -5.1903 -4.5905 15 7 10.5662 -5.8888 -3.6143 16 14 10.3797 -5.6456 -6.3678 17 1 11.5828 -4.9131 -6.8381 18 1 10.6205 -7.1076 -6.4660 19 1 9.2148 -5.2779 -7.2122 20 6 6.1004 1.8872 0.0062 21 6 5.2626 2.9868 0.0005 22 6 3.8881 2.8105 0.0006 23 8 3.0626 3.8912 0.0010 24 6 3.6805 5.1797 0.0008 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.7884 -0.5710 0.0005 31 1 6.0038 -1.4153 0.5135 32 1 7.4154 -0.3311 0.5138 33 1 7.2833 -0.1583 -1.9562 34 1 5.8717 -1.2424 -1.9565 35 1 7.2472 -3.0324 -0.9296 36 1 8.6584 -1.9476 -0.9295 37 1 7.1804 -2.7683 -3.3443 38 1 9.8599 -3.5099 -2.3647 39 1 8.4490 -4.5952 -2.3638 40 1 11.1439 -6.6411 -3.8173 41 1 7.1714 2.0258 0.0110 42 1 5.6792 3.9831 0.0009 43 1 4.3013 5.2850 0.8904 44 1 4.3005 5.2851 -0.8894 45 1 2.9110 5.9516 0.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576101469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:02 Heat of formation + Delta-G solvation = -89.897889 kcal Electronic energy + Delta-G solvation = -22516.642916 eV Core-core repulsion = 19112.277212 eV Total energy + Delta-G solvation = -3404.365704 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.56184 -39.49185 -38.64732 -37.37640 -35.14699 -33.85248 -32.70458 -31.14660 -30.48765 -28.83308 -27.83545 -25.75578 -24.80402 -23.55108 -22.74098 -22.45253 -21.74295 -19.41232 -18.56124 -18.09524 -17.63659 -17.21787 -16.84213 -16.49000 -16.38119 -15.68680 -15.63129 -15.24329 -15.14160 -14.96968 -14.52725 -14.23752 -14.01238 -13.75977 -13.42134 -13.40877 -13.11098 -12.91697 -12.85704 -12.80659 -12.60655 -12.49171 -12.23509 -12.07760 -12.03637 -11.80409 -11.71192 -11.56261 -11.53560 -11.22079 -10.66487 -9.66998 -9.12160 -8.73278 -8.23252 -6.34777 0.29722 0.43165 1.41285 1.43361 1.54632 2.24986 2.38214 2.39942 2.69526 3.09821 3.54498 3.78435 3.85615 4.04484 4.05014 4.07373 4.14033 4.28154 4.36902 4.41329 4.41814 4.44774 4.45826 4.54027 4.62514 4.72860 4.75669 4.81913 4.87762 4.93105 4.94941 5.06926 5.14477 5.23901 5.24581 5.26655 5.32145 5.39750 5.61544 5.68301 5.74887 6.01859 6.13479 6.44940 6.63193 6.72820 6.88858 7.36344 8.88422 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019658 B = 0.002384 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.008206 B =11743.518598 C =12409.374184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.327 6.327 4 C 0.082 3.918 5 C -0.173 4.173 6 C -0.078 4.078 7 C -0.069 4.069 8 C -0.094 4.094 9 C 0.059 3.941 10 N -0.694 5.694 11 C 0.207 3.793 12 C -0.538 4.538 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.263 1.263 20 C -0.118 4.118 21 C -0.167 4.167 22 C 0.073 3.927 23 O -0.333 6.333 24 C 0.018 3.982 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.334 0.666 38 H 0.000 1.000 39 H -0.039 1.039 40 H 0.266 0.734 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.511 19.056 10.693 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.242 6.242 4 C 0.036 3.964 5 C -0.192 4.192 6 C -0.079 4.079 7 C -0.107 4.107 8 C -0.132 4.132 9 C -0.071 4.071 10 N -0.324 5.324 11 C 0.079 3.921 12 C -0.576 4.576 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.136 4.136 21 C -0.186 4.186 22 C 0.027 3.973 23 O -0.248 6.248 24 C -0.076 4.076 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.151 0.849 38 H 0.018 0.982 39 H -0.021 1.021 40 H 0.074 0.926 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.259 19.518 10.668 28.153 hybrid contribution 0.123 -1.316 -0.389 1.377 sum -17.136 18.202 10.279 27.030 Atomic orbital electron populations 1.21782 0.91425 1.04059 1.03134 1.23035 0.97018 0.81035 1.01974 1.86122 1.18224 1.30697 1.89190 1.18467 0.83373 0.91769 1.02757 1.21115 0.93507 0.97813 1.06765 1.19723 0.93049 0.95405 0.99715 1.20486 0.98750 0.95012 0.96464 1.21400 0.98418 0.96866 0.96531 1.21990 0.98731 0.96588 0.89756 1.60536 1.19250 1.39433 1.13177 1.19211 0.91068 0.85805 0.95987 1.21565 1.29457 1.13474 0.93085 0.91768 1.25987 0.95389 0.95929 1.02530 1.70090 1.33042 1.20373 1.33945 0.85304 0.78886 0.77229 0.78703 1.19800 1.20581 1.18715 1.21059 1.00770 0.91070 1.00732 1.21310 0.90441 1.01382 1.05457 1.18520 0.89788 0.85503 1.03448 1.86116 1.35116 1.14240 1.89325 1.23325 1.00742 0.81327 1.02212 0.92009 0.88269 0.91747 0.91702 0.91259 0.83854 0.90440 0.89810 0.91594 0.92194 0.96361 0.92246 0.84883 0.98224 1.02150 0.92559 0.83850 0.82471 0.91568 0.91844 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.04 0.77 5.46 71.98 0.39 1.17 16 3 O -0.33 -8.18 9.92 -79.61 -0.79 -8.97 16 4 C 0.08 2.06 6.70 22.57 0.15 2.21 16 5 C -0.17 -3.93 8.69 22.35 0.19 -3.74 16 6 C -0.08 -1.74 5.13 -19.86 -0.10 -1.84 16 7 C -0.07 -1.51 5.34 29.84 0.16 -1.35 16 8 C -0.09 -2.55 5.46 30.59 0.17 -2.38 16 9 C 0.06 2.06 5.69 86.30 0.49 2.55 16 10 N -0.69 -30.54 6.49 -517.93 -3.36 -33.91 16 11 C 0.21 11.36 5.44 85.55 0.47 11.83 16 12 C -0.54 -31.24 9.32 25.60 0.24 -31.00 16 13 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 14 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 15 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 16 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 20 C -0.12 -2.41 9.69 22.27 0.22 -2.19 16 21 C -0.17 -3.30 9.04 22.35 0.20 -3.10 16 22 C 0.07 1.74 6.70 22.57 0.15 1.90 16 23 O -0.33 -7.71 10.28 -79.58 -0.82 -8.52 16 24 C 0.02 0.23 9.81 113.37 1.11 1.35 16 25 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 28 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 29 H 0.07 1.06 7.66 -2.38 -0.02 1.05 16 30 H 0.14 2.80 6.30 -2.91 -0.02 2.78 16 31 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 32 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.33 13.93 8.72 -89.69 -0.78 13.15 16 38 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H -0.04 -2.29 8.14 -2.39 -0.02 -2.31 16 40 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 42 H 0.16 2.17 6.30 -2.91 -0.02 2.15 16 43 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 44 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 45 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -70.92 372.78 2.56 -68.36 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.18 Total: 18.53 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 5.04 Total: -25.38 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -3.08 Total: -90.63 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.61 Total: -17.49 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.92 2.56 -68.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576101469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.539 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds