Wall clock time and date at job start Tue Mar 31 2020 07:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38667 * 120.79201 * 2 1 4 4 C 1.38173 * 119.16405 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76566 * 359.97438 * 4 3 2 6 6 C 1.31851 * 121.72604 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.61865 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47121 * 274.99608 * 7 6 5 9 9 C 1.46899 * 111.00314 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47104 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46960 * 304.99781 * 10 9 8 12 12 O 1.42904 * 109.47235 * 64.99837 * 10 9 8 13 13 C 1.53004 * 109.46817 * 184.99802 * 10 9 8 14 14 N 1.46903 * 109.46940 * 178.50704 * 13 10 9 15 15 C 1.46899 * 110.99922 * 164.00841 * 14 13 10 16 16 C 1.46899 * 110.99975 * 287.96635 * 14 13 10 17 17 C 1.50702 * 109.47045 * 170.00113 * 16 14 13 18 18 H 1.08003 * 120.00133 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99944 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47467 * 59.99600 * 21 19 17 23 23 H 1.48502 * 109.47276 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47346 * 299.99604 * 21 19 17 25 25 C 1.38227 * 120.76295 * 359.97438 * 6 5 4 26 26 H 1.08996 * 109.47669 * 269.98184 * 1 2 3 27 27 H 1.09011 * 109.46787 * 29.97898 * 1 2 3 28 28 H 1.09000 * 109.47104 * 149.97410 * 1 2 3 29 29 H 1.08008 * 120.41976 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.61743 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47881 * 34.99414 * 7 6 5 32 32 H 1.09000 * 109.47667 * 155.00143 * 7 6 5 33 33 H 1.00906 * 111.00286 * 303.95752 * 8 7 6 34 34 H 1.09004 * 109.47077 * 299.99726 * 9 8 7 35 35 H 1.08994 * 109.47437 * 60.00028 * 9 8 7 36 36 H 0.96698 * 113.99806 * 59.99558 * 12 10 9 37 37 H 1.08997 * 109.46968 * 298.50767 * 13 10 9 38 38 H 1.08998 * 109.47011 * 58.50746 * 13 10 9 39 39 H 1.09000 * 109.46711 * 65.48937 * 15 14 13 40 40 H 1.09004 * 109.47092 * 185.48217 * 15 14 13 41 41 H 1.08997 * 109.47459 * 305.48655 * 15 14 13 42 42 H 1.09003 * 109.47139 * 289.99973 * 16 14 13 43 43 H 1.08997 * 109.47178 * 50.00242 * 16 14 13 44 44 H 0.96997 * 120.00112 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.42040 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0005 6 6 3.5983 -1.1517 -0.0005 7 6 4.3799 -2.4401 -0.0011 8 7 4.7365 -2.7958 -1.3811 9 6 5.5006 -4.0498 -1.4208 10 6 5.8534 -4.3863 -2.8711 11 1 4.9429 -4.4131 -3.4697 12 8 6.7358 -3.3894 -3.3904 13 6 6.5396 -5.7528 -2.9251 14 7 6.8462 -6.0919 -4.3212 15 6 7.8228 -7.1868 -4.3947 16 6 5.6230 -6.4268 -5.0625 17 6 5.9383 -6.5279 -6.5327 18 1 6.9465 -6.3597 -6.8815 19 6 4.9395 -6.8340 -7.4325 20 7 3.7117 -7.0382 -7.0077 21 14 5.3302 -6.9586 -9.2549 22 1 6.3462 -8.0197 -9.4720 23 1 4.0937 -7.2972 -10.0043 24 1 5.8615 -5.6585 -9.7373 25 6 2.2166 -1.1909 0.0000 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8903 -0.5136 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6968 2.1378 0.0004 30 1 4.1583 2.0753 -0.0001 31 1 5.2884 -2.3143 0.5879 32 1 3.7724 -3.2340 0.4332 33 1 3.9144 -2.8551 -1.9632 34 1 6.4169 -3.9355 -0.8415 35 1 4.9004 -4.8546 -0.9964 36 1 7.5684 -3.3099 -2.9052 37 1 7.4637 -5.7184 -2.3482 38 1 5.8767 -6.5091 -2.5047 39 1 7.3798 -8.0965 -3.9892 40 1 8.1053 -7.3526 -5.4344 41 1 8.7077 -6.9240 -3.8152 42 1 5.2331 -7.3810 -4.7080 43 1 4.8772 -5.6479 -4.9036 44 1 3.0091 -7.2539 -7.6407 45 1 1.6964 -2.1374 0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578350527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:55 Heat of formation + Delta-G solvation = -13.211981 kcal Electronic energy + Delta-G solvation = -22863.622778 eV Core-core repulsion = 19494.875176 eV Total energy + Delta-G solvation = -3368.747603 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46215 -38.11808 -36.09687 -35.00117 -34.04157 -32.44805 -31.86521 -29.53485 -28.10001 -27.32338 -26.61537 -24.59729 -23.33601 -22.98700 -21.59126 -21.01578 -19.94951 -16.92786 -16.66402 -16.46998 -16.15358 -15.59070 -15.46781 -14.99349 -14.77242 -14.59347 -14.28594 -14.07524 -13.72044 -13.39278 -13.19036 -13.07936 -12.87650 -12.83326 -12.44507 -12.23258 -11.93094 -11.70505 -11.54600 -11.33937 -11.09717 -10.89376 -10.67663 -10.60883 -10.30804 -9.71661 -9.68838 -9.57221 -9.44977 -9.23823 -9.07965 -8.39150 -8.36351 -7.16171 -5.98505 -3.98526 0.90587 1.07586 3.37521 3.40811 3.44956 3.51037 4.05580 4.23198 4.41498 4.47631 4.49934 4.81167 4.86815 4.92206 4.97937 5.10330 5.18946 5.23640 5.28691 5.35804 5.37241 5.43768 5.52587 5.59385 5.66202 5.68532 5.74986 5.78143 5.88982 6.07582 6.07897 6.13397 6.36750 6.51578 6.54531 6.74843 6.93004 7.30907 7.32502 7.34627 7.84449 7.90251 8.12730 8.22612 8.33770 8.60398 9.08335 9.65083 11.12704 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.002861 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.004491 B = 9783.679449 C =10751.391833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 C -0.179 4.179 4 C 0.104 3.896 5 N -0.468 5.468 6 C 0.139 3.861 7 C 0.108 3.892 8 N -0.669 5.669 9 C 0.030 3.970 10 C 0.118 3.882 11 H 0.100 0.900 12 O -0.530 6.530 13 C 0.026 3.974 14 N -0.531 5.531 15 C 0.040 3.960 16 C 0.193 3.807 17 C -0.503 4.503 18 H 0.062 0.938 19 C 0.054 3.946 20 N -0.902 5.902 21 Si 0.898 3.102 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.170 4.170 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.132 0.868 30 H 0.155 0.845 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.344 0.656 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.361 0.639 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.043 0.957 42 H -0.012 1.012 43 H 0.031 0.969 44 H 0.261 0.739 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 11.941 18.552 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.054 4.054 5 N -0.177 5.177 6 C 0.001 3.999 7 C -0.021 4.021 8 N -0.301 5.301 9 C -0.100 4.100 10 C 0.058 3.942 11 H 0.118 0.882 12 O -0.333 6.333 13 C -0.104 4.104 14 N -0.255 5.255 15 C -0.108 4.108 16 C 0.068 3.932 17 C -0.542 4.542 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.542 5.542 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.190 4.190 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.172 0.828 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.162 0.838 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.206 0.794 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.028 0.972 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.005 0.995 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.668 12.766 17.819 22.082 hybrid contribution -1.577 -1.570 0.006 2.225 sum -4.245 11.197 17.824 21.473 Atomic orbital electron populations 1.20837 0.90252 1.03523 1.02760 1.20319 0.96764 0.92982 0.95027 1.22041 0.95788 0.98570 1.03538 1.22777 0.91677 0.96209 0.94703 1.67502 1.41104 0.97892 1.11209 1.21111 0.90551 0.93871 0.94343 1.20795 0.98804 0.90807 0.91700 1.60296 1.27343 1.34256 1.08169 1.22750 0.98458 0.89743 0.99083 1.21862 0.94147 0.86856 0.91337 0.88209 1.86697 1.30805 1.57512 1.58243 1.22680 0.98902 0.96400 0.92372 1.62025 1.15165 1.39498 1.08833 1.22194 0.94621 0.91755 1.02261 1.19770 0.85917 0.94361 0.93187 1.21124 0.95471 1.46372 0.91195 0.91933 1.24981 0.94969 0.95605 0.99126 1.69943 1.00728 1.48765 1.34715 0.86555 0.77407 0.78602 0.84817 1.20350 1.21415 1.20087 1.21906 0.94900 0.98848 1.03363 0.90612 0.90977 0.90878 0.84975 0.82756 0.89308 0.93834 0.83797 0.90716 0.94570 0.79395 0.92059 0.95339 0.97224 0.90808 0.93846 0.99471 0.95090 0.92973 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.06 36.01 0.36 -0.38 16 2 C -0.04 -0.39 5.92 -104.32 -0.62 -1.01 16 3 C -0.18 -1.59 9.82 -39.45 -0.39 -1.98 16 4 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 5 N -0.47 -6.07 10.27 -9.48 -0.10 -6.17 16 6 C 0.14 1.67 6.29 -82.59 -0.52 1.15 16 7 C 0.11 1.22 5.99 -4.98 -0.03 1.19 16 8 N -0.67 -8.92 6.44 -115.06 -0.74 -9.66 16 9 C 0.03 0.38 5.32 -3.82 -0.02 0.36 16 10 C 0.12 1.99 3.17 -26.73 -0.08 1.90 16 11 H 0.10 1.98 6.55 -51.93 -0.34 1.64 16 12 O -0.53 -9.66 13.18 -35.23 -0.46 -10.12 16 13 C 0.03 0.46 4.63 -3.82 -0.02 0.44 16 14 N -0.53 -11.71 4.60 -244.37 -1.12 -12.83 16 15 C 0.04 0.80 9.32 60.06 0.56 1.36 16 16 C 0.19 5.11 4.57 -4.98 -0.02 5.09 16 17 C -0.50 -14.52 8.54 -34.44 -0.29 -14.82 16 18 H 0.06 1.80 7.10 -52.48 -0.37 1.43 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 21 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 C -0.17 -1.74 9.43 -39.44 -0.37 -2.11 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.39 8.10 -51.92 -0.42 -0.03 16 28 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 30 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.42 8.04 -51.93 -0.42 0.00 16 33 H 0.34 4.72 8.72 -39.29 -0.34 4.37 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.36 5.18 9.05 45.56 0.41 5.60 16 37 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 38 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 39 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 40 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16 41 H 0.04 0.72 7.97 -51.93 -0.41 0.31 16 42 H -0.01 -0.35 8.11 -51.93 -0.42 -0.77 16 43 H 0.03 0.88 6.38 -51.93 -0.33 0.54 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -33.90 372.48 -9.61 -43.50 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.77 Total: 5.39 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.74 Total: -6.45 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -1.23 Total: -55.08 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.46 Total: -10.12 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.90 -9.61 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578350527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.292 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds