Wall clock time and date at job start Tue Mar 31 2020 07:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38667 * 120.79201 * 2 1 4 4 C 1.38173 * 119.16405 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76566 * 359.97438 * 4 3 2 6 6 C 1.31851 * 121.72604 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.61865 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47121 * 274.99608 * 7 6 5 9 9 C 1.46899 * 111.00314 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47104 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46960 * 304.99781 * 10 9 8 12 12 O 1.42904 * 109.47235 * 64.99837 * 10 9 8 13 13 C 1.53004 * 109.46817 * 184.99802 * 10 9 8 14 14 N 1.46903 * 109.46940 * 178.50704 * 13 10 9 15 15 C 1.46899 * 110.99922 * 164.00841 * 14 13 10 16 16 C 1.46899 * 110.99975 * 287.96635 * 14 13 10 17 17 C 1.50702 * 109.47045 * 170.00113 * 16 14 13 18 18 H 1.08003 * 120.00133 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99944 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47467 * 59.99600 * 21 19 17 23 23 H 1.48502 * 109.47276 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47346 * 299.99604 * 21 19 17 25 25 C 1.38227 * 120.76295 * 359.97438 * 6 5 4 26 26 H 1.08996 * 109.47669 * 269.98184 * 1 2 3 27 27 H 1.09011 * 109.46787 * 29.97898 * 1 2 3 28 28 H 1.09000 * 109.47104 * 149.97410 * 1 2 3 29 29 H 1.08008 * 120.41976 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.61743 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47881 * 34.99414 * 7 6 5 32 32 H 1.09000 * 109.47667 * 155.00143 * 7 6 5 33 33 H 1.00906 * 111.00286 * 303.95752 * 8 7 6 34 34 H 1.09004 * 109.47077 * 299.99726 * 9 8 7 35 35 H 1.08994 * 109.47437 * 60.00028 * 9 8 7 36 36 H 0.96698 * 113.99806 * 59.99558 * 12 10 9 37 37 H 1.08997 * 109.46968 * 298.50767 * 13 10 9 38 38 H 1.08998 * 109.47011 * 58.50746 * 13 10 9 39 39 H 1.09000 * 109.46711 * 65.48937 * 15 14 13 40 40 H 1.09004 * 109.47092 * 185.48217 * 15 14 13 41 41 H 1.08997 * 109.47459 * 305.48655 * 15 14 13 42 42 H 1.09003 * 109.47139 * 289.99973 * 16 14 13 43 43 H 1.08997 * 109.47178 * 50.00242 * 16 14 13 44 44 H 0.96997 * 120.00112 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.42040 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0005 6 6 3.5983 -1.1517 -0.0005 7 6 4.3799 -2.4401 -0.0011 8 7 4.7365 -2.7958 -1.3811 9 6 5.5006 -4.0498 -1.4208 10 6 5.8534 -4.3863 -2.8711 11 1 4.9429 -4.4131 -3.4697 12 8 6.7358 -3.3894 -3.3904 13 6 6.5396 -5.7528 -2.9251 14 7 6.8462 -6.0919 -4.3212 15 6 7.8228 -7.1868 -4.3947 16 6 5.6230 -6.4268 -5.0625 17 6 5.9383 -6.5279 -6.5327 18 1 6.9465 -6.3597 -6.8815 19 6 4.9395 -6.8340 -7.4325 20 7 3.7117 -7.0382 -7.0077 21 14 5.3302 -6.9586 -9.2549 22 1 6.3462 -8.0197 -9.4720 23 1 4.0937 -7.2972 -10.0043 24 1 5.8615 -5.6585 -9.7373 25 6 2.2166 -1.1909 0.0000 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8903 -0.5136 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6968 2.1378 0.0004 30 1 4.1583 2.0753 -0.0001 31 1 5.2884 -2.3143 0.5879 32 1 3.7724 -3.2340 0.4332 33 1 3.9144 -2.8551 -1.9632 34 1 6.4169 -3.9355 -0.8415 35 1 4.9004 -4.8546 -0.9964 36 1 7.5684 -3.3099 -2.9052 37 1 7.4637 -5.7184 -2.3482 38 1 5.8767 -6.5091 -2.5047 39 1 7.3798 -8.0965 -3.9892 40 1 8.1053 -7.3526 -5.4344 41 1 8.7077 -6.9240 -3.8152 42 1 5.2331 -7.3810 -4.7080 43 1 4.8772 -5.6479 -4.9036 44 1 3.0091 -7.2539 -7.6407 45 1 1.6964 -2.1374 0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578350527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:55 Heat of formation + Delta-G solvation = -40.455984 kcal Electronic energy + Delta-G solvation = -22864.804167 eV Core-core repulsion = 19494.875176 eV Total energy + Delta-G solvation = -3369.928991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21898 -39.51955 -37.48755 -36.28820 -34.77798 -34.59954 -32.78257 -30.83491 -29.33666 -28.71938 -27.76762 -26.05305 -24.79831 -23.90252 -22.89330 -21.95783 -21.53268 -18.60542 -17.88326 -17.52336 -17.11629 -16.87642 -16.65753 -16.41926 -16.00885 -15.93886 -15.62317 -15.26026 -14.94721 -14.67869 -14.51586 -13.98417 -13.83237 -13.79398 -13.54629 -13.35416 -13.14939 -13.10013 -12.93031 -12.71126 -12.58680 -12.52166 -12.32545 -12.24776 -12.15642 -11.50019 -11.32530 -10.72719 -10.59592 -10.40503 -10.32653 -10.00212 -9.36243 -8.93748 -8.20366 -6.29422 0.14671 0.34110 1.39617 1.43682 1.51204 2.40472 2.67994 3.09359 3.13064 3.36060 3.49666 3.71282 3.78112 3.86235 3.95312 4.13831 4.19949 4.22848 4.37024 4.38977 4.48369 4.52521 4.58969 4.61379 4.63517 4.72835 4.74684 4.77260 4.78494 4.90467 5.06148 5.07945 5.12133 5.21372 5.24606 5.31320 5.39968 5.64971 5.80389 5.97390 6.07488 6.26212 6.35980 6.66291 6.85946 7.12134 7.14277 7.39650 8.90634 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.002861 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.004491 B = 9783.679449 C =10751.391833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.177 4.177 4 C 0.087 3.913 5 N -0.503 5.503 6 C 0.117 3.883 7 C 0.114 3.886 8 N -0.684 5.684 9 C 0.044 3.956 10 C 0.125 3.875 11 H 0.059 0.941 12 O -0.555 6.555 13 C 0.027 3.973 14 N -0.545 5.545 15 C 0.042 3.958 16 C 0.210 3.790 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.271 1.271 25 C -0.179 4.179 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.161 0.839 30 H 0.174 0.826 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.337 0.663 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.378 0.622 37 H 0.098 0.902 38 H 0.029 0.971 39 H 0.009 0.991 40 H 0.053 0.947 41 H 0.083 0.917 42 H -0.040 1.040 43 H 0.004 0.996 44 H 0.264 0.736 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 12.545 19.223 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.196 4.196 4 C -0.070 4.070 5 N -0.214 5.214 6 C -0.021 4.021 7 C -0.015 4.015 8 N -0.315 5.315 9 C -0.085 4.085 10 C 0.065 3.935 11 H 0.077 0.923 12 O -0.360 6.360 13 C -0.102 4.102 14 N -0.269 5.269 15 C -0.106 4.106 16 C 0.083 3.917 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.196 1.196 25 C -0.199 4.199 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.179 0.821 30 H 0.191 0.809 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.226 0.774 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.101 0.899 42 H -0.023 1.023 43 H 0.022 0.978 44 H 0.073 0.927 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.356 13.370 18.521 22.964 hybrid contribution -1.669 -1.689 -0.142 2.379 sum -4.024 11.681 18.379 22.146 Atomic orbital electron populations 1.20889 0.88189 1.04188 1.03834 1.20736 0.98338 0.92720 0.94045 1.22374 0.95349 0.99798 1.02128 1.23212 0.92816 0.96262 0.94693 1.67459 1.42402 0.98883 1.12614 1.21256 0.91409 0.93845 0.95552 1.20781 0.99066 0.91313 0.90378 1.60284 1.27345 1.34378 1.09501 1.22558 0.99525 0.90135 0.96323 1.21682 0.92384 0.86458 0.93008 0.92304 1.86644 1.32041 1.57856 1.59471 1.22791 1.00784 0.96496 0.90096 1.61924 1.13386 1.40171 1.11386 1.22213 0.95351 0.91247 1.01824 1.19381 0.87307 0.91890 0.93083 1.21457 0.95473 1.46624 0.92661 0.92238 1.25907 0.94726 0.94984 1.04116 1.70069 1.01693 1.49319 1.36433 0.85459 0.77637 0.78903 0.78763 1.19067 1.20627 1.19642 1.22113 0.94501 1.00043 1.03266 0.89202 0.89776 0.90775 0.82126 0.80870 0.89503 0.92045 0.84555 0.88690 0.93393 0.77445 0.88362 0.95280 0.97278 0.92779 0.89871 1.02284 0.97751 0.92722 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.06 71.24 0.72 -0.51 16 2 C -0.05 -0.86 5.92 -19.67 -0.12 -0.97 16 3 C -0.18 -2.87 9.82 22.36 0.22 -2.65 16 4 C 0.09 1.75 11.18 84.67 0.95 2.69 16 5 N -0.50 -13.07 10.27 -183.90 -1.89 -14.96 16 6 C 0.12 2.79 6.29 42.55 0.27 3.05 16 7 C 0.11 2.50 5.99 85.55 0.51 3.02 16 8 N -0.68 -18.16 6.44 -517.94 -3.33 -21.50 16 9 C 0.04 1.10 5.32 86.31 0.46 1.56 16 10 C 0.13 4.22 3.17 30.60 0.10 4.32 16 11 H 0.06 2.47 6.55 -2.39 -0.02 2.46 16 12 O -0.55 -20.12 13.18 -148.98 -1.96 -22.08 16 13 C 0.03 0.93 4.63 86.30 0.40 1.33 16 14 N -0.54 -24.04 4.60 -927.04 -4.27 -28.31 16 15 C 0.04 1.62 9.32 127.69 1.19 2.81 16 16 C 0.21 11.53 4.57 85.56 0.39 11.92 16 17 C -0.52 -30.90 8.54 25.60 0.22 -30.69 16 18 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 19 C 0.00 0.03 5.46 84.66 0.46 0.49 16 20 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 21 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 25 C -0.18 -3.56 9.43 22.36 0.21 -3.35 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.71 8.10 -2.38 -0.02 0.69 16 28 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 29 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 30 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.11 8.04 -2.39 -0.02 1.09 16 33 H 0.34 9.55 8.72 -89.69 -0.78 8.76 16 34 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.38 10.36 9.05 -74.06 -0.67 9.69 16 37 H 0.10 2.64 7.88 -2.39 -0.02 2.62 16 38 H 0.03 1.00 8.05 -2.39 -0.02 0.98 16 39 H 0.01 0.34 8.13 -2.39 -0.02 0.32 16 40 H 0.05 2.27 6.90 -2.39 -0.02 2.26 16 41 H 0.08 2.53 7.97 -2.39 -0.02 2.51 16 42 H -0.04 -2.39 8.11 -2.39 -0.02 -2.41 16 43 H 0.00 0.27 6.38 -2.39 -0.02 0.25 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -74.95 372.48 -3.64 -78.58 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.47 Total: 24.72 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.98 Total: -6.97 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -9.21 Total: -121.97 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.96 Total: -22.08 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.95 -3.64 -78.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578350527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.128 kcal (2) G-P(sol) polarization free energy of solvation -74.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds